Wall clock time and date at job start Tue Mar 31 2020 10:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48502 * 109.47010 * 270.00264 * 3 2 1 5 5 H 1.48502 * 109.47095 * 29.99896 * 3 2 1 6 6 H 1.48497 * 109.47446 * 150.00140 * 3 2 1 7 7 C 1.40035 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00085 * 199.69739 * 7 2 1 9 9 C 1.40762 * 120.00178 * 19.68920 * 7 2 1 10 10 C 1.41041 * 120.34858 * 36.82380 * 9 7 2 11 11 F 1.35094 * 120.09732 * 0.02562 * 10 9 7 12 12 C 1.37692 * 119.80213 * 180.02562 * 10 9 7 13 13 C 1.38855 * 120.54319 * 0.02562 * 12 10 9 14 14 C 1.38078 * 120.72389 * 359.71931 * 13 12 10 15 15 C 1.39154 * 120.16487 * 0.55788 * 14 13 12 16 16 C 1.47748 * 120.26425 * 179.71850 * 15 14 13 17 17 C 1.39925 * 120.14190 * 89.73050 * 16 15 14 18 18 F 1.35103 * 120.05885 * 359.97438 * 17 16 15 19 19 C 1.38083 * 119.88202 * 179.72518 * 17 16 15 20 20 C 1.38620 * 120.17033 * 0.24961 * 19 17 16 21 21 F 1.35103 * 119.85092 * 179.97438 * 20 19 17 22 22 C 1.38746 * 120.29117 * 0.02562 * 20 19 17 23 23 F 1.35108 * 119.93944 * 179.97438 * 22 20 19 24 24 C 1.38282 * 120.12192 * 0.02562 * 22 20 19 25 25 F 1.35095 * 120.09118 * 179.97438 * 24 22 20 26 26 H 0.97003 * 119.99501 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.72852 * 179.97438 * 12 10 9 28 28 H 1.08005 * 119.64185 * 179.97438 * 13 12 10 29 29 H 1.07998 * 119.91401 * 180.30061 * 14 13 12 30 30 H 1.07998 * 119.91617 * 180.27516 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0083 -1.2128 -0.0005 8 1 3.0409 -1.2403 0.3147 9 6 1.3663 -2.3960 -0.4118 10 6 0.4349 -2.3704 -1.4707 11 9 0.1539 -1.2072 -2.0977 12 6 -0.1869 -3.5344 -1.8634 13 6 0.0946 -4.7349 -1.2250 14 6 1.0064 -4.7863 -0.1894 15 6 1.6479 -3.6269 0.2356 16 6 2.6193 -3.6782 1.3477 17 6 3.9739 -3.9131 1.0871 18 9 4.3972 -4.0942 -0.1831 19 6 4.8780 -3.9544 2.1299 20 6 4.4462 -3.7690 3.4341 21 9 5.3363 -3.8112 4.4496 22 6 3.1039 -3.5413 3.7011 23 9 2.6907 -3.3620 4.9749 24 6 2.1879 -3.4986 2.6660 25 9 0.8810 -3.2773 2.9268 26 1 -0.4849 0.8401 0.0004 27 1 -0.9002 -3.5133 -2.6742 28 1 -0.4020 -5.6392 -1.5447 29 1 1.2191 -5.7279 0.2948 30 1 5.9243 -4.1312 1.9290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205197996.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:59 Heat of formation + Delta-G solvation = -176.172300 kcal Electronic energy + Delta-G solvation = -26012.069928 eV Core-core repulsion = 21379.804654 eV Total energy + Delta-G solvation = -4632.265274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.042 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.53386 -48.88379 -48.69456 -48.13075 -47.11866 -38.58866 -37.04913 -33.82457 -31.79572 -30.06691 -29.73961 -28.12988 -25.46567 -23.45065 -22.88508 -21.18203 -20.59596 -18.41866 -18.09406 -17.67822 -17.34708 -16.62125 -16.08614 -15.83745 -15.56963 -15.42936 -15.19509 -15.17096 -14.64847 -14.55472 -14.49825 -14.38412 -14.09013 -13.84197 -13.62120 -12.92059 -12.58135 -12.20095 -11.93354 -11.67498 -11.65853 -11.43388 -11.22546 -11.15438 -10.80481 -10.72639 -10.33778 -9.69992 -9.24015 -8.66911 -8.40060 -7.77275 -7.36998 -6.98247 -4.65284 0.80761 0.87360 2.32822 2.60860 3.01373 3.04574 3.07279 3.16325 3.46504 3.84044 4.07079 4.32156 4.38284 4.47511 4.61805 4.90371 5.16755 5.50080 5.65259 5.81847 5.90417 5.91678 6.00053 6.06344 6.29721 6.39418 6.79106 6.80943 6.96900 7.24091 7.37857 7.55085 7.59740 7.90360 8.18778 8.54309 8.63191 10.00441 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.006634 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.288615 B = 4219.973514 C = 5036.716529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.081 3.919 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.463 4.463 8 H 0.084 0.916 9 C 0.119 3.881 10 C 0.046 3.954 11 F -0.141 7.141 12 C -0.125 4.125 13 C -0.213 4.213 14 C -0.067 4.067 15 C -0.180 4.180 16 C -0.020 4.020 17 C 0.153 3.847 18 F -0.112 7.112 19 C -0.179 4.179 20 C 0.108 3.892 21 F -0.121 7.121 22 C 0.016 3.984 23 F -0.121 7.121 24 C 0.141 3.859 25 F -0.101 7.101 26 H 0.287 0.713 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 -5.442 3.268 8.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.102 0.898 9 C 0.116 3.884 10 C 0.026 3.974 11 F -0.119 7.119 12 C -0.145 4.145 13 C -0.233 4.233 14 C -0.086 4.086 15 C -0.182 4.182 16 C -0.023 4.023 17 C 0.133 3.867 18 F -0.090 7.090 19 C -0.199 4.199 20 C 0.087 3.913 21 F -0.099 7.099 22 C -0.005 4.005 23 F -0.099 7.099 24 C 0.120 3.880 25 F -0.078 7.078 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.598 -5.222 3.316 8.343 hybrid contribution 0.101 1.098 0.199 1.120 sum 5.699 -4.125 3.515 7.864 Atomic orbital electron populations 1.69739 1.07815 1.30341 1.30763 1.25833 0.94672 1.01360 0.92253 0.86296 0.80562 0.80393 0.79658 1.18875 1.20037 1.18410 1.19285 0.98944 0.91200 1.39679 0.89803 1.17335 0.90147 0.91948 0.88999 1.17694 1.03260 0.80649 0.95838 1.91344 1.92538 1.47474 1.80562 1.20700 1.00336 0.92565 1.00877 1.20039 1.04962 0.96336 1.01940 1.20513 0.96070 0.95523 0.96462 1.17838 1.05904 0.94814 0.99667 1.18640 0.92619 0.98829 0.92168 1.17131 0.90743 0.99428 0.79394 1.91562 1.89857 1.91925 1.35627 1.20771 1.01814 1.07782 0.89528 1.16761 0.84563 1.04962 0.85005 1.91536 1.66535 1.93952 1.57891 1.17410 0.91474 1.11793 0.79822 1.91530 1.90514 1.93297 1.34579 1.17179 0.78969 1.00763 0.91086 1.91597 1.30916 1.91186 1.94145 0.90175 0.87777 0.87871 0.88366 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.67 11.12 55.55 0.62 -19.05 16 2 C 0.08 2.01 4.51 -17.31 -0.08 1.93 16 3 Si 0.91 18.68 29.60 -169.99 -5.03 13.64 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.70 8.19 -37.95 -0.31 -12.01 16 8 H 0.08 2.05 7.60 -52.49 -0.40 1.65 16 9 C 0.12 2.99 5.42 -106.48 -0.58 2.41 16 10 C 0.05 1.15 6.67 -38.72 -0.26 0.89 16 11 F -0.14 -3.66 14.28 2.25 0.03 -3.63 16 12 C -0.13 -2.76 9.99 -39.55 -0.40 -3.15 16 13 C -0.21 -4.31 10.02 -39.41 -0.40 -4.71 16 14 C -0.07 -1.37 9.76 -39.30 -0.38 -1.76 16 15 C -0.18 -4.01 4.65 -104.27 -0.48 -4.50 16 16 C -0.02 -0.40 4.22 -104.77 -0.44 -0.84 16 17 C 0.15 2.59 7.28 -39.01 -0.28 2.30 16 18 F -0.11 -1.96 16.83 2.25 0.04 -1.92 16 19 C -0.18 -2.49 9.99 -39.50 -0.39 -2.89 16 20 C 0.11 1.60 7.31 -39.25 -0.29 1.31 16 21 F -0.12 -1.71 17.17 2.25 0.04 -1.67 16 22 C 0.02 0.28 7.30 -39.38 -0.29 -0.01 16 23 F -0.12 -2.06 17.08 2.25 0.04 -2.02 16 24 C 0.14 2.68 7.29 -38.95 -0.28 2.40 16 25 F -0.10 -2.12 16.74 2.25 0.04 -2.08 16 26 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 27 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 28 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 29 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -26.37 294.86 -5.87 -32.24 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -1.22 Total: -1.34 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -4.86 Total: -18.63 kcal Atomic # 7 Polarization: -19.67 SS G_CDS: 0.62 Total: -19.05 kcal Atomic # 9 Polarization: -11.50 SS G_CDS: 0.18 Total: -11.31 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.37 -5.87 -32.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205197996.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.931 kcal (2) G-P(sol) polarization free energy of solvation -26.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds