Wall clock time and date at job start Tue Mar 31 2020 10:15:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30818 * 1
3 3 Si 1.86801 * 120.00250 * 2 1
4 4 H 1.48502 * 109.47010 * 270.00264 * 3 2 1
5 5 H 1.48502 * 109.47095 * 29.99896 * 3 2 1
6 6 H 1.48497 * 109.47446 * 150.00140 * 3 2 1
7 7 C 1.40035 * 119.99887 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00085 * 199.69739 * 7 2 1
9 9 C 1.40762 * 120.00178 * 19.68920 * 7 2 1
10 10 C 1.41041 * 120.34858 * 36.82380 * 9 7 2
11 11 F 1.35094 * 120.09732 * 0.02562 * 10 9 7
12 12 C 1.37692 * 119.80213 * 180.02562 * 10 9 7
13 13 C 1.38855 * 120.54319 * 0.02562 * 12 10 9
14 14 C 1.38078 * 120.72389 * 359.71931 * 13 12 10
15 15 C 1.39154 * 120.16487 * 0.55788 * 14 13 12
16 16 C 1.47748 * 120.26425 * 179.71850 * 15 14 13
17 17 C 1.39925 * 120.14190 * 89.73050 * 16 15 14
18 18 F 1.35103 * 120.05885 * 359.97438 * 17 16 15
19 19 C 1.38083 * 119.88202 * 179.72518 * 17 16 15
20 20 C 1.38620 * 120.17033 * 0.24961 * 19 17 16
21 21 F 1.35103 * 119.85092 * 179.97438 * 20 19 17
22 22 C 1.38746 * 120.29117 * 0.02562 * 20 19 17
23 23 F 1.35108 * 119.93944 * 179.97438 * 22 20 19
24 24 C 1.38282 * 120.12192 * 0.02562 * 22 20 19
25 25 F 1.35095 * 120.09118 * 179.97438 * 24 22 20
26 26 H 0.97003 * 119.99501 * 359.97438 * 1 2 3
27 27 H 1.08007 * 119.72852 * 179.97438 * 12 10 9
28 28 H 1.08005 * 119.64185 * 179.97438 * 13 12 10
29 29 H 1.07998 * 119.91401 * 180.30061 * 14 13 12
30 30 H 1.07998 * 119.91617 * 180.27516 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2423 1.6177 0.0000
4 1 2.4897 2.0464 -1.4001
5 1 1.4397 2.6527 0.7000
6 1 3.5398 1.4402 0.7000
7 6 2.0083 -1.2128 -0.0005
8 1 3.0409 -1.2403 0.3147
9 6 1.3663 -2.3960 -0.4118
10 6 0.4349 -2.3704 -1.4707
11 9 0.1539 -1.2072 -2.0977
12 6 -0.1869 -3.5344 -1.8634
13 6 0.0946 -4.7349 -1.2250
14 6 1.0064 -4.7863 -0.1894
15 6 1.6479 -3.6269 0.2356
16 6 2.6193 -3.6782 1.3477
17 6 3.9739 -3.9131 1.0871
18 9 4.3972 -4.0942 -0.1831
19 6 4.8780 -3.9544 2.1299
20 6 4.4462 -3.7690 3.4341
21 9 5.3363 -3.8112 4.4496
22 6 3.1039 -3.5413 3.7011
23 9 2.6907 -3.3620 4.9749
24 6 2.1879 -3.4986 2.6660
25 9 0.8810 -3.2773 2.9268
26 1 -0.4849 0.8401 0.0004
27 1 -0.9002 -3.5133 -2.6742
28 1 -0.4020 -5.6392 -1.5447
29 1 1.2191 -5.7279 0.2948
30 1 5.9243 -4.1312 1.9290
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001205197996.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:15:59
Heat of formation + Delta-G solvation = -176.172300 kcal
Electronic energy + Delta-G solvation = -26012.069928 eV
Core-core repulsion = 21379.804654 eV
Total energy + Delta-G solvation = -4632.265274 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.042 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-49.53386 -48.88379 -48.69456 -48.13075 -47.11866 -38.58866 -37.04913 -33.82457
-31.79572 -30.06691 -29.73961 -28.12988 -25.46567 -23.45065 -22.88508 -21.18203
-20.59596 -18.41866 -18.09406 -17.67822 -17.34708 -16.62125 -16.08614 -15.83745
-15.56963 -15.42936 -15.19509 -15.17096 -14.64847 -14.55472 -14.49825 -14.38412
-14.09013 -13.84197 -13.62120 -12.92059 -12.58135 -12.20095 -11.93354 -11.67498
-11.65853 -11.43388 -11.22546 -11.15438 -10.80481 -10.72639 -10.33778 -9.69992
-9.24015 -8.66911 -8.40060 -7.77275 -7.36998 -6.98247 -4.65284 0.80761
0.87360 2.32822 2.60860 3.01373 3.04574 3.07279 3.16325 3.46504
3.84044 4.07079 4.32156 4.38284 4.47511 4.61805 4.90371 5.16755
5.50080 5.65259 5.81847 5.90417 5.91678 6.00053 6.06344 6.29721
6.39418 6.79106 6.80943 6.96900 7.24091 7.37857 7.55085 7.59740
7.90360 8.18778 8.54309 8.63191 10.00441
Molecular weight = 314.04amu
Principal moments of inertia in cm(-1)
A = 0.012863 B = 0.006634 C = 0.005558
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2176.288615 B = 4219.973514 C = 5036.716529
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.764 5.764
2 C 0.081 3.919
3 Si 0.907 3.093
4 H -0.264 1.264
5 H -0.275 1.275
6 H -0.260 1.260
7 C -0.463 4.463
8 H 0.084 0.916
9 C 0.119 3.881
10 C 0.046 3.954
11 F -0.141 7.141
12 C -0.125 4.125
13 C -0.213 4.213
14 C -0.067 4.067
15 C -0.180 4.180
16 C -0.020 4.020
17 C 0.153 3.847
18 F -0.112 7.112
19 C -0.179 4.179
20 C 0.108 3.892
21 F -0.121 7.121
22 C 0.016 3.984
23 F -0.121 7.121
24 C 0.141 3.859
25 F -0.101 7.101
26 H 0.287 0.713
27 H 0.104 0.896
28 H 0.103 0.897
29 H 0.098 0.902
30 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.855 -5.442 3.268 8.636
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.387 5.387
2 C -0.141 4.141
3 Si 0.731 3.269
4 H -0.189 1.189
5 H -0.200 1.200
6 H -0.184 1.184
7 C -0.491 4.491
8 H 0.102 0.898
9 C 0.116 3.884
10 C 0.026 3.974
11 F -0.119 7.119
12 C -0.145 4.145
13 C -0.233 4.233
14 C -0.086 4.086
15 C -0.182 4.182
16 C -0.023 4.023
17 C 0.133 3.867
18 F -0.090 7.090
19 C -0.199 4.199
20 C 0.087 3.913
21 F -0.099 7.099
22 C -0.005 4.005
23 F -0.099 7.099
24 C 0.120 3.880
25 F -0.078 7.078
26 H 0.098 0.902
27 H 0.122 0.878
28 H 0.121 0.879
29 H 0.116 0.884
30 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges 5.598 -5.222 3.316 8.343
hybrid contribution 0.101 1.098 0.199 1.120
sum 5.699 -4.125 3.515 7.864
Atomic orbital electron populations
1.69739 1.07815 1.30341 1.30763 1.25833 0.94672 1.01360 0.92253
0.86296 0.80562 0.80393 0.79658 1.18875 1.20037 1.18410 1.19285
0.98944 0.91200 1.39679 0.89803 1.17335 0.90147 0.91948 0.88999
1.17694 1.03260 0.80649 0.95838 1.91344 1.92538 1.47474 1.80562
1.20700 1.00336 0.92565 1.00877 1.20039 1.04962 0.96336 1.01940
1.20513 0.96070 0.95523 0.96462 1.17838 1.05904 0.94814 0.99667
1.18640 0.92619 0.98829 0.92168 1.17131 0.90743 0.99428 0.79394
1.91562 1.89857 1.91925 1.35627 1.20771 1.01814 1.07782 0.89528
1.16761 0.84563 1.04962 0.85005 1.91536 1.66535 1.93952 1.57891
1.17410 0.91474 1.11793 0.79822 1.91530 1.90514 1.93297 1.34579
1.17179 0.78969 1.00763 0.91086 1.91597 1.30916 1.91186 1.94145
0.90175 0.87777 0.87871 0.88366 0.82276
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -19.67 11.12 55.55 0.62 -19.05 16
2 C 0.08 2.01 4.51 -17.31 -0.08 1.93 16
3 Si 0.91 18.68 29.60 -169.99 -5.03 13.64 16
4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16
5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16
6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16
7 C -0.46 -11.70 8.19 -37.95 -0.31 -12.01 16
8 H 0.08 2.05 7.60 -52.49 -0.40 1.65 16
9 C 0.12 2.99 5.42 -106.48 -0.58 2.41 16
10 C 0.05 1.15 6.67 -38.72 -0.26 0.89 16
11 F -0.14 -3.66 14.28 2.25 0.03 -3.63 16
12 C -0.13 -2.76 9.99 -39.55 -0.40 -3.15 16
13 C -0.21 -4.31 10.02 -39.41 -0.40 -4.71 16
14 C -0.07 -1.37 9.76 -39.30 -0.38 -1.76 16
15 C -0.18 -4.01 4.65 -104.27 -0.48 -4.50 16
16 C -0.02 -0.40 4.22 -104.77 -0.44 -0.84 16
17 C 0.15 2.59 7.28 -39.01 -0.28 2.30 16
18 F -0.11 -1.96 16.83 2.25 0.04 -1.92 16
19 C -0.18 -2.49 9.99 -39.50 -0.39 -2.89 16
20 C 0.11 1.60 7.31 -39.25 -0.29 1.31 16
21 F -0.12 -1.71 17.17 2.25 0.04 -1.67 16
22 C 0.02 0.28 7.30 -39.38 -0.29 -0.01 16
23 F -0.12 -2.06 17.08 2.25 0.04 -2.02 16
24 C 0.14 2.68 7.29 -38.95 -0.28 2.40 16
25 F -0.10 -2.12 16.74 2.25 0.04 -2.08 16
26 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16
27 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16
28 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16
29 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16
30 H 0.16 1.70 8.06 -52.49 -0.42 1.27 16
LS Contribution 294.86 15.07 4.44 4.44
Total: -1.00 -26.37 294.86 -5.87 -32.24
By element:
Atomic # 1 Polarization: -0.12 SS G_CDS: -1.22 Total: -1.34 kcal
Atomic # 6 Polarization: -13.76 SS G_CDS: -4.86 Total: -18.63 kcal
Atomic # 7 Polarization: -19.67 SS G_CDS: 0.62 Total: -19.05 kcal
Atomic # 9 Polarization: -11.50 SS G_CDS: 0.18 Total: -11.31 kcal
Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.64 kcal
Total LS contribution 4.44 Total: 4.44 kcal
Total: -26.37 -5.87 -32.24 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001205197996.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -143.931 kcal
(2) G-P(sol) polarization free energy of solvation -26.370 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.301 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.241 kcal
(6) G-S(sol) free energy of system = (1) + (5) -176.172 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds