Wall clock time and date at job start Tue Mar 31 2020 10:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48502 * 109.47010 * 270.00264 * 3 2 1 5 5 H 1.48502 * 109.47095 * 29.99896 * 3 2 1 6 6 H 1.48497 * 109.47446 * 150.00140 * 3 2 1 7 7 C 1.40035 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00085 * 199.69739 * 7 2 1 9 9 C 1.40762 * 120.00178 * 19.68920 * 7 2 1 10 10 C 1.41041 * 120.34858 * 36.82380 * 9 7 2 11 11 F 1.35094 * 120.09732 * 0.02562 * 10 9 7 12 12 C 1.37692 * 119.80213 * 180.02562 * 10 9 7 13 13 C 1.38855 * 120.54319 * 0.02562 * 12 10 9 14 14 C 1.38078 * 120.72389 * 359.71931 * 13 12 10 15 15 C 1.39154 * 120.16487 * 0.55788 * 14 13 12 16 16 C 1.47748 * 120.26425 * 179.71850 * 15 14 13 17 17 C 1.39925 * 120.14190 * 89.73050 * 16 15 14 18 18 F 1.35103 * 120.05885 * 359.97438 * 17 16 15 19 19 C 1.38083 * 119.88202 * 179.72518 * 17 16 15 20 20 C 1.38620 * 120.17033 * 0.24961 * 19 17 16 21 21 F 1.35103 * 119.85092 * 179.97438 * 20 19 17 22 22 C 1.38746 * 120.29117 * 0.02562 * 20 19 17 23 23 F 1.35108 * 119.93944 * 179.97438 * 22 20 19 24 24 C 1.38282 * 120.12192 * 0.02562 * 22 20 19 25 25 F 1.35095 * 120.09118 * 179.97438 * 24 22 20 26 26 H 0.97003 * 119.99501 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.72852 * 179.97438 * 12 10 9 28 28 H 1.08005 * 119.64185 * 179.97438 * 13 12 10 29 29 H 1.07998 * 119.91401 * 180.30061 * 14 13 12 30 30 H 1.07998 * 119.91617 * 180.27516 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0083 -1.2128 -0.0005 8 1 3.0409 -1.2403 0.3147 9 6 1.3663 -2.3960 -0.4118 10 6 0.4349 -2.3704 -1.4707 11 9 0.1539 -1.2072 -2.0977 12 6 -0.1869 -3.5344 -1.8634 13 6 0.0946 -4.7349 -1.2250 14 6 1.0064 -4.7863 -0.1894 15 6 1.6479 -3.6269 0.2356 16 6 2.6193 -3.6782 1.3477 17 6 3.9739 -3.9131 1.0871 18 9 4.3972 -4.0942 -0.1831 19 6 4.8780 -3.9544 2.1299 20 6 4.4462 -3.7690 3.4341 21 9 5.3363 -3.8112 4.4496 22 6 3.1039 -3.5413 3.7011 23 9 2.6907 -3.3620 4.9749 24 6 2.1879 -3.4986 2.6660 25 9 0.8810 -3.2773 2.9268 26 1 -0.4849 0.8401 0.0004 27 1 -0.9002 -3.5133 -2.6742 28 1 -0.4020 -5.6392 -1.5447 29 1 1.2191 -5.7279 0.2948 30 1 5.9243 -4.1312 1.9290 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205197996.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:58 Heat of formation + Delta-G solvation = -187.135928 kcal Electronic energy + Delta-G solvation = -26012.545347 eV Core-core repulsion = 21379.804654 eV Total energy + Delta-G solvation = -4632.740693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.042 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.85607 -50.24711 -50.05363 -49.52930 -49.01503 -40.06243 -38.62307 -35.59954 -33.32537 -31.54436 -31.33496 -29.68345 -27.22251 -24.89278 -24.23734 -22.93797 -22.19583 -19.76571 -19.48640 -19.39163 -18.81276 -17.97892 -17.63332 -17.28463 -17.20944 -16.84692 -16.66161 -16.54751 -16.29236 -16.06340 -15.96272 -15.81657 -15.70789 -15.44824 -15.19084 -14.57997 -13.99647 -13.84885 -13.46279 -13.34483 -13.22924 -13.05392 -12.87064 -12.57098 -12.39986 -12.35641 -11.97785 -11.42180 -11.02170 -10.01817 -9.76392 -9.50323 -9.14812 -8.76653 -6.49951 -0.53389 -0.44359 0.60566 0.86961 1.32810 1.43207 1.44908 1.82158 2.14461 2.14967 2.62502 2.77510 2.98223 3.13026 3.24015 3.36961 3.64908 4.10961 4.26868 4.29118 4.31334 4.45386 4.63360 4.73077 4.74979 4.77351 5.06001 5.19437 5.41942 5.53674 5.66049 5.85772 5.87068 6.13797 6.38258 6.75347 6.82932 8.24471 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.006634 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.288615 B = 4219.973514 C = 5036.716529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.042 3.958 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.492 4.492 8 H 0.081 0.919 9 C 0.089 3.911 10 C 0.003 3.997 11 F -0.156 7.156 12 C -0.131 4.131 13 C -0.201 4.201 14 C -0.076 4.076 15 C -0.176 4.176 16 C -0.045 4.045 17 C 0.151 3.849 18 F -0.116 7.116 19 C -0.146 4.146 20 C 0.125 3.875 21 F -0.109 7.109 22 C 0.017 3.983 23 F -0.123 7.123 24 C 0.121 3.879 25 F -0.122 7.122 26 H 0.289 0.711 27 H 0.124 0.876 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -6.851 3.834 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.177 4.177 3 Si 0.787 3.213 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.520 4.520 8 H 0.099 0.901 9 C 0.085 3.915 10 C -0.017 4.017 11 F -0.135 7.135 12 C -0.150 4.150 13 C -0.220 4.220 14 C -0.094 4.094 15 C -0.178 4.178 16 C -0.047 4.047 17 C 0.131 3.869 18 F -0.094 7.094 19 C -0.165 4.165 20 C 0.105 3.895 21 F -0.088 7.088 22 C -0.004 4.004 23 F -0.102 7.102 24 C 0.100 3.900 25 F -0.100 7.100 26 H 0.100 0.900 27 H 0.142 0.858 28 H 0.160 0.840 29 H 0.148 0.852 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.525 -6.649 3.887 10.767 hybrid contribution -0.468 1.298 0.056 1.381 sum 7.056 -5.350 3.943 9.694 Atomic orbital electron populations 1.69798 1.09149 1.31007 1.33114 1.26594 0.95264 1.04256 0.91539 0.85418 0.79636 0.76705 0.79559 1.18905 1.19295 1.17490 1.19401 0.99022 0.92141 1.41469 0.90056 1.17709 0.90962 0.93232 0.89551 1.18160 1.05234 0.81166 0.97143 1.91283 1.92839 1.48515 1.80903 1.21042 1.00249 0.92277 1.01400 1.20553 1.03808 0.96945 1.00649 1.20989 0.95545 0.96387 0.96490 1.18224 1.05614 0.94404 0.99558 1.18627 0.93514 1.01007 0.91529 1.17138 0.90117 0.99689 0.79919 1.91556 1.89729 1.92008 1.36120 1.21051 1.03144 1.04481 0.87834 1.16676 0.83676 1.03638 0.85556 1.91580 1.65924 1.93693 1.57574 1.17447 0.92014 1.11739 0.79217 1.91523 1.90711 1.93324 1.34613 1.17273 0.78553 1.02492 0.91678 1.91534 1.32474 1.91708 1.94303 0.90045 0.85804 0.84001 0.85157 0.77966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.31 11.12 21.85 0.24 -43.07 16 2 C 0.04 2.11 4.51 85.28 0.38 2.50 16 3 Si 0.97 39.07 29.60 68.60 2.03 41.11 16 4 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.49 -25.62 8.19 23.32 0.19 -25.43 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.05 16 9 C 0.09 4.55 5.42 -21.07 -0.11 4.44 16 10 C 0.00 0.16 6.67 22.83 0.15 0.31 16 11 F -0.16 -8.52 14.28 44.97 0.64 -7.88 16 12 C -0.13 -5.70 9.99 22.29 0.22 -5.48 16 13 C -0.20 -7.69 10.02 22.38 0.22 -7.46 16 14 C -0.08 -2.98 9.76 22.45 0.22 -2.76 16 15 C -0.18 -7.83 4.65 -19.64 -0.09 -7.92 16 16 C -0.04 -1.71 4.22 -19.96 -0.08 -1.80 16 17 C 0.15 4.79 7.28 22.64 0.16 4.95 16 18 F -0.12 -3.84 16.83 44.97 0.76 -3.09 16 19 C -0.15 -3.49 9.99 22.32 0.22 -3.26 16 20 C 0.13 3.30 7.31 22.48 0.16 3.47 16 21 F -0.11 -2.66 17.17 44.97 0.77 -1.89 16 22 C 0.02 0.55 7.30 22.40 0.16 0.71 16 23 F -0.12 -4.05 17.08 44.97 0.77 -3.29 16 24 C 0.12 4.56 7.29 22.68 0.17 4.73 16 25 F -0.12 -5.26 16.74 44.97 0.75 -4.51 16 26 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 27 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 28 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 29 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 30 H 0.20 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -59.40 294.86 9.19 -50.21 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 1.24 Total: 5.40 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 1.99 Total: -33.00 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.24 Total: -43.07 kcal Atomic # 9 Polarization: -24.34 SS G_CDS: 3.69 Total: -20.65 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.11 kcal Total: -59.40 9.19 -50.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205197996.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.924 kcal (2) G-P(sol) polarization free energy of solvation -59.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds