Wall clock time and date at job start Tue Mar 31 2020 11:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48500 * 109.47464 * 240.00043 * 3 2 1 5 5 H 1.48500 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47322 * 119.99903 * 3 2 1 7 7 C 1.39915 * 120.00545 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00502 * 192.11730 * 7 2 1 9 9 C 1.41295 * 119.99675 * 12.12091 * 7 2 1 10 10 C 1.40626 * 120.22468 * 27.64743 * 9 7 2 11 11 C 1.38200 * 119.70415 * 179.97438 * 10 9 7 12 12 N 1.39783 * 119.91584 * 179.97438 * 11 10 9 13 13 C 1.40027 * 119.99865 * 148.36125 * 12 11 10 14 14 C 1.39302 * 120.34348 * 334.92828 * 13 12 11 15 15 N 1.31231 * 120.97123 * 180.02562 * 14 13 12 16 16 C 1.33419 * 122.26976 * 359.97438 * 15 14 13 17 17 S 1.76033 * 130.19665 * 179.97438 * 16 15 14 18 18 C 1.75270 * 92.24227 * 179.97438 * 17 16 15 19 19 C 1.31812 * 111.44365 * 359.97438 * 18 17 16 20 20 C 1.39834 * 120.31207 * 359.97438 * 16 15 14 21 21 C 1.38278 * 120.34306 * 154.94026 * 13 12 11 22 22 C 1.39434 * 120.16282 * 0.25745 * 11 10 9 23 23 C 1.38352 * 120.46680 * 359.48386 * 22 11 10 24 24 C 1.38016 * 120.29100 * 0.51613 * 23 22 11 25 25 F 1.35100 * 120.08979 * 179.72328 * 24 23 22 26 26 H 0.96991 * 120.00468 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.15247 * 0.02562 * 10 9 7 28 28 H 0.97003 * 120.00163 * 328.37308 * 12 11 10 29 29 H 1.08002 * 119.51317 * 359.97438 * 14 13 12 30 30 H 1.08007 * 124.28060 * 179.97438 * 18 17 16 31 31 H 1.07997 * 122.58410 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.66873 * 0.26268 * 21 13 12 33 33 H 1.08006 * 119.76421 * 179.72562 * 22 11 10 34 34 H 1.07996 * 119.85627 * 180.23608 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0701 -1.2221 0.1958 9 6 1.3254 -2.4216 -0.2580 10 6 0.1641 -2.4241 -1.0510 11 6 -0.4950 -3.6138 -1.2964 12 7 -1.6501 -3.6213 -2.0836 13 6 -1.9507 -4.7367 -2.8750 14 6 -0.9356 -5.5876 -3.3065 15 7 -1.2033 -6.6360 -4.0490 16 6 -2.4455 -6.9427 -4.4271 17 16 -3.0371 -8.2788 -5.4087 18 6 -4.6976 -7.7351 -5.2710 19 6 -4.7871 -6.6390 -4.5443 20 6 -3.5211 -6.1398 -4.0350 21 6 -3.2581 -5.0048 -3.2366 22 6 -0.0139 -4.8056 -0.7559 23 6 1.1310 -4.8119 0.0209 24 6 1.8042 -3.6348 0.2781 25 9 2.9186 -3.6449 1.0417 26 1 -0.4850 0.8399 0.0004 27 1 -0.2107 -1.5007 -1.4671 28 1 -2.2433 -2.8539 -2.0818 29 1 0.0868 -5.3809 -3.0265 30 1 -5.5410 -8.2349 -5.7243 31 1 -5.7286 -6.1495 -4.3435 32 1 -4.0616 -4.3573 -2.9179 33 1 -0.5365 -5.7311 -0.9482 34 1 1.4970 -5.7413 0.4315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210697040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:04 Heat of formation + Delta-G solvation = 29.805673 kcal Electronic energy + Delta-G solvation = -21980.291048 eV Core-core repulsion = 18497.320317 eV Total energy + Delta-G solvation = -3482.970732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.28574 -40.33374 -38.12171 -35.98363 -34.89028 -33.66009 -31.14227 -29.97880 -29.21776 -27.34233 -25.56981 -23.72813 -23.65342 -21.55838 -21.14051 -20.17330 -18.26501 -17.61217 -16.96527 -16.40050 -16.12962 -15.65057 -15.35939 -14.96574 -14.59326 -14.25835 -14.23784 -14.06285 -13.19767 -13.06215 -12.88130 -12.73785 -12.51244 -12.32330 -11.89353 -11.68762 -11.58860 -11.43925 -11.17599 -10.90569 -10.84377 -10.49118 -10.25358 -9.72527 -9.45219 -9.43932 -9.19930 -8.42964 -7.83696 -7.72533 -7.01012 -6.54081 -4.60916 0.62858 1.26722 1.35848 1.96896 2.26291 2.52832 2.65640 2.97289 3.00726 3.05686 3.65566 3.79829 3.85784 4.39847 4.54920 4.77733 4.92637 4.97780 5.25559 5.29097 5.50182 5.64929 5.79773 5.86963 5.95272 6.10103 6.19412 6.28249 6.46317 6.73638 6.74513 6.94728 7.02564 7.36085 7.38614 7.63109 7.80548 7.89085 8.02249 8.13231 8.39310 8.58184 8.65841 9.98014 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.003106 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.758395 B = 9012.059959 C = 9802.734092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.448 4.448 8 H 0.084 0.916 9 C 0.106 3.894 10 C -0.172 4.172 11 C 0.161 3.839 12 N -0.671 5.671 13 C 0.166 3.834 14 C 0.103 3.897 15 N -0.431 5.431 16 C 0.008 3.992 17 S 0.110 5.890 18 C -0.194 4.194 19 C -0.116 4.116 20 C -0.087 4.087 21 C -0.124 4.124 22 C -0.249 4.249 23 C -0.099 4.099 24 C -0.038 4.038 25 F -0.162 7.162 26 H 0.284 0.716 27 H 0.133 0.867 28 H 0.408 0.592 29 H 0.175 0.825 30 H 0.169 0.831 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.101 0.899 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 -7.155 -7.952 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.103 0.897 9 C 0.102 3.898 10 C -0.194 4.194 11 C 0.067 3.933 12 N -0.292 5.292 13 C 0.059 3.941 14 C -0.071 4.071 15 N -0.140 5.140 16 C -0.236 4.236 17 S 0.370 5.630 18 C -0.328 4.328 19 C -0.147 4.147 20 C -0.098 4.098 21 C -0.157 4.157 22 C -0.271 4.271 23 C -0.118 4.118 24 C -0.058 4.058 25 F -0.141 7.141 26 H 0.095 0.905 27 H 0.150 0.850 28 H 0.244 0.756 29 H 0.191 0.809 30 H 0.186 0.814 31 H 0.162 0.838 32 H 0.154 0.846 33 H 0.119 0.881 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.227 -8.848 -8.910 15.012 hybrid contribution -1.195 2.801 1.260 3.296 sum -9.421 -6.047 -7.650 13.559 Atomic orbital electron populations 1.69763 1.07556 1.29647 1.34837 1.25916 0.94895 1.01534 0.91965 0.86216 0.80029 0.79469 0.80257 1.18620 1.20179 1.18760 1.19516 0.96761 0.90258 1.41213 0.89750 1.17378 0.91921 0.91128 0.89391 1.20905 0.98460 0.95942 1.04089 1.17581 0.87283 0.94908 0.93545 1.42163 1.25597 1.16357 1.45130 1.18607 0.93243 0.90200 0.92006 1.22946 0.99965 0.90276 0.93871 1.67114 1.19466 1.16881 1.10520 1.23249 0.92804 1.01347 1.06235 1.84039 0.98214 1.26831 1.53951 1.25107 1.00642 1.01464 1.05579 1.20752 0.97226 0.97134 0.99633 1.19816 0.93164 0.96583 1.00215 1.20786 0.95039 0.97712 1.02129 1.19995 1.01641 0.96002 1.09481 1.20314 0.96024 0.95799 0.99702 1.17884 0.89758 0.95140 1.03046 1.91279 1.51055 1.97392 1.74421 0.90547 0.84985 0.75610 0.80852 0.81378 0.83780 0.84554 0.88078 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.81 10.84 55.55 0.60 -18.20 16 2 C 0.08 1.77 5.23 -17.34 -0.09 1.68 16 3 Si 0.92 17.79 29.58 -169.99 -5.03 12.76 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.45 -11.40 8.77 -37.79 -0.33 -11.73 16 8 H 0.08 2.13 7.75 -52.49 -0.41 1.72 16 9 C 0.11 2.66 5.56 -106.78 -0.59 2.07 16 10 C -0.17 -3.98 8.56 -38.70 -0.33 -4.31 16 11 C 0.16 3.29 5.92 -83.80 -0.50 2.80 16 12 N -0.67 -11.38 5.48 -8.43 -0.05 -11.43 16 13 C 0.17 2.67 6.06 -83.70 -0.51 2.17 16 14 C 0.10 1.76 9.03 -17.41 -0.16 1.61 16 15 N -0.43 -7.43 10.36 -11.62 -0.12 -7.55 16 16 C 0.01 0.12 7.64 -16.27 -0.12 -0.01 16 17 S 0.11 1.34 23.23 -107.50 -2.50 -1.16 16 18 C -0.19 -1.89 11.01 28.84 0.32 -1.58 16 19 C -0.12 -1.26 10.39 -38.67 -0.40 -1.66 16 20 C -0.09 -1.22 6.05 -105.35 -0.64 -1.86 16 21 C -0.12 -1.74 10.12 -38.43 -0.39 -2.13 16 22 C -0.25 -5.09 7.75 -39.09 -0.30 -5.39 16 23 C -0.10 -2.12 10.00 -39.62 -0.40 -2.52 16 24 C -0.04 -0.91 7.31 -38.61 -0.28 -1.19 16 25 F -0.16 -3.96 16.74 2.25 0.04 -3.92 16 26 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 27 H 0.13 3.12 6.18 -52.49 -0.32 2.80 16 28 H 0.41 6.19 8.89 -40.82 -0.36 5.83 16 29 H 0.17 3.06 6.30 -52.49 -0.33 2.73 16 30 H 0.17 1.08 8.06 -52.48 -0.42 0.65 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.10 1.94 6.56 -52.48 -0.34 1.60 16 34 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -26.75 313.16 -9.65 -36.40 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -2.59 Total: 10.44 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -4.72 Total: -22.06 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.44 Total: -37.18 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.04 Total: -3.92 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.50 Total: -1.16 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.75 -9.65 -36.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210697040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.203 kcal (2) G-P(sol) polarization free energy of solvation -26.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds