Wall clock time and date at job start Tue Mar 31 2020 11:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48500 * 109.47464 * 240.00043 * 3 2 1 5 5 H 1.48500 * 109.47253 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47322 * 119.99903 * 3 2 1 7 7 C 1.39915 * 120.00545 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00502 * 192.11730 * 7 2 1 9 9 C 1.41295 * 119.99675 * 12.12091 * 7 2 1 10 10 C 1.40626 * 120.22468 * 27.64743 * 9 7 2 11 11 C 1.38200 * 119.70415 * 179.97438 * 10 9 7 12 12 N 1.39783 * 119.91584 * 179.97438 * 11 10 9 13 13 C 1.40027 * 119.99865 * 148.36125 * 12 11 10 14 14 C 1.39302 * 120.34348 * 334.92828 * 13 12 11 15 15 N 1.31231 * 120.97123 * 180.02562 * 14 13 12 16 16 C 1.33419 * 122.26976 * 359.97438 * 15 14 13 17 17 S 1.76033 * 130.19665 * 179.97438 * 16 15 14 18 18 C 1.75270 * 92.24227 * 179.97438 * 17 16 15 19 19 C 1.31812 * 111.44365 * 359.97438 * 18 17 16 20 20 C 1.39834 * 120.31207 * 359.97438 * 16 15 14 21 21 C 1.38278 * 120.34306 * 154.94026 * 13 12 11 22 22 C 1.39434 * 120.16282 * 0.25745 * 11 10 9 23 23 C 1.38352 * 120.46680 * 359.48386 * 22 11 10 24 24 C 1.38016 * 120.29100 * 0.51613 * 23 22 11 25 25 F 1.35100 * 120.08979 * 179.72328 * 24 23 22 26 26 H 0.96991 * 120.00468 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.15247 * 0.02562 * 10 9 7 28 28 H 0.97003 * 120.00163 * 328.37308 * 12 11 10 29 29 H 1.08002 * 119.51317 * 359.97438 * 14 13 12 30 30 H 1.08007 * 124.28060 * 179.97438 * 18 17 16 31 31 H 1.07997 * 122.58410 * 180.02562 * 19 18 17 32 32 H 1.07998 * 120.66873 * 0.26268 * 21 13 12 33 33 H 1.08006 * 119.76421 * 179.72562 * 22 11 10 34 34 H 1.07996 * 119.85627 * 180.23608 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6965 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0701 -1.2221 0.1958 9 6 1.3254 -2.4216 -0.2580 10 6 0.1641 -2.4241 -1.0510 11 6 -0.4950 -3.6138 -1.2964 12 7 -1.6501 -3.6213 -2.0836 13 6 -1.9507 -4.7367 -2.8750 14 6 -0.9356 -5.5876 -3.3065 15 7 -1.2033 -6.6360 -4.0490 16 6 -2.4455 -6.9427 -4.4271 17 16 -3.0371 -8.2788 -5.4087 18 6 -4.6976 -7.7351 -5.2710 19 6 -4.7871 -6.6390 -4.5443 20 6 -3.5211 -6.1398 -4.0350 21 6 -3.2581 -5.0048 -3.2366 22 6 -0.0139 -4.8056 -0.7559 23 6 1.1310 -4.8119 0.0209 24 6 1.8042 -3.6348 0.2781 25 9 2.9186 -3.6449 1.0417 26 1 -0.4850 0.8399 0.0004 27 1 -0.2107 -1.5007 -1.4671 28 1 -2.2433 -2.8539 -2.0818 29 1 0.0868 -5.3809 -3.0265 30 1 -5.5410 -8.2349 -5.7243 31 1 -5.7286 -6.1495 -4.3435 32 1 -4.0616 -4.3573 -2.9179 33 1 -0.5365 -5.7311 -0.9482 34 1 1.4970 -5.7413 0.4315 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210697040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:03 Heat of formation + Delta-G solvation = 16.272870 kcal Electronic energy + Delta-G solvation = -21980.877875 eV Core-core repulsion = 18497.320317 eV Total energy + Delta-G solvation = -3483.557558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.058 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.15768 -41.54775 -39.67571 -37.27457 -36.16349 -35.34414 -32.43152 -31.73441 -30.42170 -28.85712 -27.33810 -24.90993 -24.81928 -23.24665 -22.52355 -21.48252 -19.58485 -19.04201 -18.35878 -17.94328 -17.68653 -17.19124 -16.65286 -16.38483 -16.08556 -15.92800 -15.54533 -15.19718 -14.77922 -14.44756 -14.14109 -14.11010 -13.94672 -13.59418 -13.42981 -13.29789 -13.17714 -12.80272 -12.70260 -12.45671 -12.07058 -11.88369 -11.75432 -11.45376 -11.15741 -10.62772 -10.46538 -9.62400 -9.52633 -9.04941 -8.72711 -8.03365 -6.48059 -0.42352 0.03925 0.35703 0.81430 0.91004 1.06361 1.33795 1.38392 1.48353 1.50583 2.18705 2.30483 2.57186 2.72970 3.46994 3.51621 3.69344 3.80691 3.88559 4.04173 4.26963 4.32117 4.53633 4.57705 4.64552 4.93063 4.94726 4.96174 5.03170 5.17562 5.30529 5.33114 5.39553 5.63717 5.73833 5.91701 5.99620 6.28800 6.60112 6.62789 6.75999 6.79094 6.89904 8.24972 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.023768 B = 0.003106 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.758395 B = 9012.059959 C = 9802.734092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.041 3.959 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.490 4.490 8 H 0.071 0.929 9 C 0.081 3.919 10 C -0.188 4.188 11 C 0.180 3.820 12 N -0.667 5.667 13 C 0.149 3.851 14 C 0.084 3.916 15 N -0.453 5.453 16 C -0.020 4.020 17 S 0.112 5.888 18 C -0.170 4.170 19 C -0.125 4.125 20 C -0.093 4.093 21 C -0.107 4.107 22 C -0.241 4.241 23 C -0.094 4.094 24 C -0.075 4.075 25 F -0.171 7.171 26 H 0.293 0.707 27 H 0.124 0.876 28 H 0.416 0.584 29 H 0.158 0.842 30 H 0.211 0.789 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.117 0.883 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.585 -7.837 -9.274 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.175 4.175 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.519 4.519 8 H 0.089 0.911 9 C 0.077 3.923 10 C -0.211 4.211 11 C 0.084 3.916 12 N -0.291 5.291 13 C 0.044 3.956 14 C -0.089 4.089 15 N -0.163 5.163 16 C -0.264 4.264 17 S 0.371 5.629 18 C -0.304 4.304 19 C -0.155 4.155 20 C -0.104 4.104 21 C -0.139 4.139 22 C -0.263 4.263 23 C -0.113 4.113 24 C -0.095 4.095 25 F -0.150 7.150 26 H 0.104 0.896 27 H 0.141 0.859 28 H 0.254 0.746 29 H 0.175 0.825 30 H 0.228 0.772 31 H 0.196 0.804 32 H 0.184 0.816 33 H 0.135 0.865 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.394 -9.559 -10.255 18.066 hybrid contribution -0.433 2.744 1.496 3.155 sum -11.827 -6.815 -8.759 16.219 Atomic orbital electron populations 1.69783 1.08481 1.30940 1.34665 1.26639 0.95727 1.04074 0.91081 0.85229 0.78864 0.75628 0.79932 1.18474 1.18458 1.18967 1.19665 0.96514 0.91791 1.43900 0.91097 1.17716 0.92940 0.91621 0.90011 1.20817 0.98719 0.96636 1.04943 1.17535 0.87575 0.93945 0.92540 1.41959 1.24633 1.17302 1.45167 1.18604 0.94075 0.89998 0.92905 1.22721 0.99686 0.91264 0.95207 1.67065 1.20930 1.17230 1.11063 1.23871 0.92737 1.02920 1.06883 1.84103 1.00199 1.25643 1.52963 1.25610 1.00057 1.00639 1.04104 1.21017 0.97001 0.97669 0.99817 1.20269 0.94429 0.96074 0.99623 1.21123 0.94763 0.97636 1.00420 1.20187 1.01103 0.96617 1.08347 1.20579 0.95776 0.95835 0.99146 1.18168 0.90586 0.96072 1.04686 1.91235 1.51557 1.97473 1.74784 0.89640 0.85861 0.74564 0.82525 0.77228 0.80363 0.81557 0.86477 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.30 10.84 21.82 0.24 -39.07 16 2 C 0.04 1.98 5.23 85.24 0.45 2.42 16 3 Si 0.98 37.00 29.58 68.60 2.03 39.03 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 6 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.49 -26.16 8.77 23.43 0.21 -25.96 16 8 H 0.07 3.81 7.75 -2.91 -0.02 3.79 16 9 C 0.08 4.27 5.56 -21.26 -0.12 4.15 16 10 C -0.19 -9.05 8.56 22.84 0.20 -8.85 16 11 C 0.18 7.46 5.92 38.15 0.23 7.69 16 12 N -0.67 -22.31 5.48 -180.58 -0.99 -23.30 16 13 C 0.15 4.66 6.06 38.10 0.23 4.89 16 14 C 0.08 2.88 9.03 85.04 0.77 3.65 16 15 N -0.45 -15.57 10.36 -190.68 -1.98 -17.55 16 16 C -0.02 -0.59 7.64 84.84 0.65 0.06 16 17 S 0.11 2.43 23.23 -56.49 -1.31 1.12 16 18 C -0.17 -2.51 11.01 67.04 0.74 -1.77 16 19 C -0.13 -2.12 10.39 23.31 0.24 -1.88 16 20 C -0.09 -2.33 6.05 -20.34 -0.12 -2.45 16 21 C -0.11 -2.74 10.12 23.02 0.23 -2.51 16 22 C -0.24 -9.86 7.75 22.59 0.17 -9.69 16 23 C -0.09 -4.10 10.00 22.24 0.22 -3.88 16 24 C -0.07 -3.76 7.31 22.90 0.17 -3.60 16 25 F -0.17 -8.76 16.74 44.97 0.75 -8.01 16 26 H 0.29 12.67 8.30 -92.71 -0.77 11.90 16 27 H 0.12 6.05 6.18 -2.91 -0.02 6.04 16 28 H 0.42 12.30 8.89 -92.71 -0.82 11.47 16 29 H 0.16 5.76 6.30 -2.91 -0.02 5.74 16 30 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16 31 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 32 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 33 H 0.12 4.43 6.56 -2.91 -0.02 4.41 16 34 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -60.90 313.16 3.35 -57.55 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.36 Total: 27.96 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 4.26 Total: -37.72 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.73 Total: -79.91 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 0.75 Total: -8.01 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.31 Total: 1.12 kcal Total: -60.90 3.35 -57.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210697040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.821 kcal (2) G-P(sol) polarization free energy of solvation -60.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds