Wall clock time and date at job start Tue Mar 31 2020 10:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47246 * 0.21415 * 3 2 1 5 5 N 1.46904 * 109.46770 * 179.52822 * 4 3 2 6 6 C 1.46901 * 110.99832 * 291.26013 * 5 4 3 7 7 C 1.50701 * 109.46748 * 160.21431 * 6 5 4 8 8 H 1.08002 * 119.99879 * 4.62627 * 7 6 5 9 9 C 1.37873 * 119.99867 * 184.62913 * 7 6 5 10 10 N 1.31517 * 120.00178 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99988 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47282 * 59.99704 * 11 9 7 13 13 H 1.48504 * 109.47087 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46847 * 299.99807 * 11 9 7 15 15 C 1.46900 * 110.99719 * 167.31011 * 5 4 3 16 16 C 1.50704 * 109.47211 * 293.95360 * 15 5 4 17 17 C 1.38694 * 120.81083 * 269.72122 * 16 15 5 18 18 Cl 1.73600 * 120.45660 * 359.97438 * 17 16 15 19 19 N 1.32498 * 119.09112 * 179.78479 * 17 16 15 20 20 C 1.31785 * 120.82773 * 0.47881 * 19 17 16 21 21 N 1.31785 * 121.78387 * 359.77109 * 20 19 17 22 22 C 1.32496 * 120.82979 * 359.97438 * 21 20 19 23 23 Cl 1.73601 * 120.45610 * 179.97438 * 22 21 20 24 24 H 1.09008 * 109.46853 * 240.21805 * 3 2 1 25 25 H 1.08992 * 109.46876 * 120.21686 * 3 2 1 26 26 H 1.08997 * 109.46576 * 59.52939 * 4 3 2 27 27 H 1.09000 * 109.46985 * 299.53097 * 4 3 2 28 28 H 1.08995 * 109.47146 * 280.21070 * 6 5 4 29 29 H 1.08997 * 109.47255 * 40.21509 * 6 5 4 30 30 H 0.96996 * 120.00318 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.46946 * 53.95068 * 15 5 4 32 32 H 1.08998 * 109.47357 * 173.95083 * 15 5 4 33 33 H 1.07997 * 119.10929 * 179.75650 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.4416 -0.0054 5 7 4.5877 -1.4408 -0.0168 6 6 5.1039 -0.9420 -1.2985 7 6 6.5332 -0.4968 -1.1252 8 1 7.0342 -0.6452 -0.1800 9 6 7.2013 0.0999 -2.1733 10 7 6.5913 0.2802 -3.3245 11 14 8.9732 0.6510 -1.9588 12 1 9.8181 -0.5210 -1.6157 13 1 9.4595 1.2577 -3.2241 14 1 9.0508 1.6540 -0.8665 15 6 5.1172 -2.7788 0.2791 16 6 4.7698 -3.1543 1.6966 17 6 5.6278 -2.8495 2.7428 18 17 7.1261 -2.0263 2.4408 19 7 5.2864 -3.1918 3.9765 20 6 4.1535 -3.8219 4.2135 21 7 3.3160 -4.1324 3.2445 22 6 3.5870 -3.8182 1.9862 23 17 2.4771 -4.2326 0.7172 24 1 2.9711 0.5113 0.8920 25 1 2.9711 0.5180 -0.8880 26 1 2.7487 -1.9546 -0.8930 27 1 2.7625 -1.9565 0.8869 28 1 5.0587 -1.7371 -2.0426 29 1 4.4985 -0.0987 -1.6305 30 1 7.0612 0.7003 -4.0618 31 1 4.6778 -3.5032 -0.4067 32 1 6.2005 -2.7756 0.1591 33 1 3.9047 -4.0912 5.2293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233411237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:49 Heat of formation + Delta-G solvation = 73.991778 kcal Electronic energy + Delta-G solvation = -21417.715395 eV Core-core repulsion = 17952.104122 eV Total energy + Delta-G solvation = -3465.611273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 314.040 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.35281 -37.88193 -37.11951 -36.76210 -36.15688 -33.66991 -33.15371 -32.62277 -30.66568 -27.53429 -26.02173 -24.73673 -23.44610 -22.82090 -20.27392 -18.38403 -18.24350 -17.41937 -16.61345 -15.79788 -15.24739 -14.91924 -14.85017 -14.55900 -14.45532 -14.15473 -13.86087 -13.17884 -12.99803 -12.71276 -12.27206 -12.19608 -12.08931 -11.99171 -11.64252 -11.58391 -11.10510 -11.04715 -10.92487 -10.72250 -10.66692 -10.42094 -10.28156 -9.88086 -9.71215 -9.48757 -9.29793 -8.51087 -7.60157 -6.11717 -4.12976 0.47490 0.53509 1.25644 1.74829 2.93110 2.99553 3.27549 3.30247 3.33319 3.35281 3.83607 4.05879 4.11302 4.33459 4.37579 4.73124 4.90061 5.06737 5.23199 5.27415 5.41822 5.71831 5.73537 5.84239 6.07289 6.17279 6.20247 6.39661 6.91478 7.11456 7.58211 7.64863 7.73994 7.81744 7.97669 8.33059 8.94348 9.51885 10.98698 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.011022 B = 0.006192 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.735909 B = 4521.110197 C = 6199.626520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.218 3.782 3 C -0.029 4.029 4 C 0.052 3.948 5 N -0.521 5.521 6 C 0.189 3.811 7 C -0.507 4.507 8 H 0.069 0.931 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.098 3.902 16 C -0.138 4.138 17 C 0.245 3.755 18 Cl 0.027 6.973 19 N -0.512 5.512 20 C 0.322 3.678 21 N -0.514 5.514 22 C 0.226 3.774 23 Cl 0.003 6.997 24 H 0.114 0.886 25 H 0.121 0.879 26 H 0.040 0.960 27 H 0.063 0.937 28 H -0.003 1.003 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.052 0.948 32 H 0.112 0.888 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -7.768 10.719 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.099 4.099 3 C -0.069 4.069 4 C -0.078 4.078 5 N -0.246 5.246 6 C 0.065 3.935 7 C -0.546 4.546 8 H 0.087 0.913 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.201 1.201 15 C -0.031 4.031 16 C -0.145 4.145 17 C 0.072 3.928 18 Cl 0.056 6.944 19 N -0.229 5.229 20 C 0.034 3.966 21 N -0.231 5.231 22 C 0.053 3.947 23 Cl 0.032 6.968 24 H 0.132 0.868 25 H 0.139 0.861 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.130 0.870 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.325 -7.566 11.658 14.555 hybrid contribution 1.297 0.067 -1.473 1.964 sum -3.029 -7.499 10.185 13.005 Atomic orbital electron populations 1.81158 1.13155 1.09064 1.09939 1.29413 0.95448 0.92695 0.92388 1.19401 0.80249 1.00195 1.07069 1.22212 0.90826 0.94030 1.00715 1.62201 1.03810 1.20249 1.38301 1.19910 0.96237 0.94963 0.82365 1.21103 0.96323 1.38835 0.98344 0.91324 1.24926 0.98125 0.95963 0.95196 1.69919 1.37184 1.43809 1.02715 0.86673 0.84972 0.79092 0.77414 1.20253 1.21401 1.20103 1.21026 1.03519 0.91545 0.87024 1.21355 0.93441 0.99517 1.00185 1.22027 0.90619 0.91582 0.88611 1.98497 1.26997 1.74417 1.94488 1.67921 1.19504 1.13485 1.21986 1.24895 0.83653 0.89485 0.98583 1.67825 1.34257 1.21522 0.99458 1.21953 0.89543 0.93478 0.89736 1.98450 1.61071 1.91353 1.45943 0.86814 0.86134 0.94211 0.91856 0.98549 0.93887 0.92785 0.92998 0.86985 0.77164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.74 18.54 42.16 0.78 -6.95 16 2 C 0.22 3.25 15.43 -20.76 -0.32 2.93 16 3 C -0.03 -0.40 5.73 -29.52 -0.17 -0.57 16 4 C 0.05 0.78 3.55 -3.82 -0.01 0.76 16 5 N -0.52 -8.96 4.40 -237.51 -1.04 -10.01 16 6 C 0.19 4.03 4.61 -4.97 -0.02 4.01 16 7 C -0.51 -12.15 8.61 -34.44 -0.30 -12.45 16 8 H 0.07 1.60 7.67 -52.49 -0.40 1.19 16 9 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -24.14 13.29 55.43 0.74 -23.40 16 11 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 C 0.10 1.55 4.39 -4.97 -0.02 1.53 16 16 C -0.14 -1.98 4.94 -104.28 -0.52 -2.50 16 17 C 0.24 3.51 7.33 -17.10 -0.13 3.38 16 18 Cl 0.03 0.40 27.64 -51.86 -1.43 -1.03 16 19 N -0.51 -6.71 10.43 -11.69 -0.12 -6.83 16 20 C 0.32 3.57 12.28 -92.17 -1.13 2.44 16 21 N -0.51 -6.58 10.43 -11.69 -0.12 -6.71 16 22 C 0.23 3.08 6.24 -17.09 -0.11 2.97 16 23 Cl 0.00 0.04 24.75 -51.86 -1.28 -1.24 16 24 H 0.11 1.44 8.14 -51.92 -0.42 1.01 16 25 H 0.12 1.73 6.35 -51.93 -0.33 1.40 16 26 H 0.04 0.60 7.92 -51.93 -0.41 0.19 16 27 H 0.06 0.91 4.44 -51.93 -0.23 0.68 16 28 H 0.00 -0.08 8.00 -51.93 -0.42 -0.49 16 29 H 0.04 0.96 6.03 -51.93 -0.31 0.65 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.05 0.79 7.01 -51.93 -0.36 0.43 16 32 H 0.11 1.91 6.21 -51.93 -0.32 1.59 16 33 H 0.21 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -27.66 317.05 -8.32 -35.98 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -2.77 Total: -3.40 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -2.82 Total: 3.92 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.23 Total: -53.90 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -2.72 Total: -2.27 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.66 -8.32 -35.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233411237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.968 kcal (2) G-P(sol) polarization free energy of solvation -27.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds