Wall clock time and date at job start Tue Mar 31 2020 10:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47246 * 0.21415 * 3 2 1 5 5 N 1.46904 * 109.46770 * 179.52822 * 4 3 2 6 6 C 1.46901 * 110.99832 * 291.26013 * 5 4 3 7 7 C 1.50701 * 109.46748 * 160.21431 * 6 5 4 8 8 H 1.08002 * 119.99879 * 4.62627 * 7 6 5 9 9 C 1.37873 * 119.99867 * 184.62913 * 7 6 5 10 10 N 1.31517 * 120.00178 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99988 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47282 * 59.99704 * 11 9 7 13 13 H 1.48504 * 109.47087 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46847 * 299.99807 * 11 9 7 15 15 C 1.46900 * 110.99719 * 167.31011 * 5 4 3 16 16 C 1.50704 * 109.47211 * 293.95360 * 15 5 4 17 17 C 1.38694 * 120.81083 * 269.72122 * 16 15 5 18 18 Cl 1.73600 * 120.45660 * 359.97438 * 17 16 15 19 19 N 1.32498 * 119.09112 * 179.78479 * 17 16 15 20 20 C 1.31785 * 120.82773 * 0.47881 * 19 17 16 21 21 N 1.31785 * 121.78387 * 359.77109 * 20 19 17 22 22 C 1.32496 * 120.82979 * 359.97438 * 21 20 19 23 23 Cl 1.73601 * 120.45610 * 179.97438 * 22 21 20 24 24 H 1.09008 * 109.46853 * 240.21805 * 3 2 1 25 25 H 1.08992 * 109.46876 * 120.21686 * 3 2 1 26 26 H 1.08997 * 109.46576 * 59.52939 * 4 3 2 27 27 H 1.09000 * 109.46985 * 299.53097 * 4 3 2 28 28 H 1.08995 * 109.47146 * 280.21070 * 6 5 4 29 29 H 1.08997 * 109.47255 * 40.21509 * 6 5 4 30 30 H 0.96996 * 120.00318 * 179.97438 * 10 9 7 31 31 H 1.08999 * 109.46946 * 53.95068 * 15 5 4 32 32 H 1.08998 * 109.47357 * 173.95083 * 15 5 4 33 33 H 1.07997 * 119.10929 * 179.75650 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.4416 -0.0054 5 7 4.5877 -1.4408 -0.0168 6 6 5.1039 -0.9420 -1.2985 7 6 6.5332 -0.4968 -1.1252 8 1 7.0342 -0.6452 -0.1800 9 6 7.2013 0.0999 -2.1733 10 7 6.5913 0.2802 -3.3245 11 14 8.9732 0.6510 -1.9588 12 1 9.8181 -0.5210 -1.6157 13 1 9.4595 1.2577 -3.2241 14 1 9.0508 1.6540 -0.8665 15 6 5.1172 -2.7788 0.2791 16 6 4.7698 -3.1543 1.6966 17 6 5.6278 -2.8495 2.7428 18 17 7.1261 -2.0263 2.4408 19 7 5.2864 -3.1918 3.9765 20 6 4.1535 -3.8219 4.2135 21 7 3.3160 -4.1324 3.2445 22 6 3.5870 -3.8182 1.9862 23 17 2.4771 -4.2326 0.7172 24 1 2.9711 0.5113 0.8920 25 1 2.9711 0.5180 -0.8880 26 1 2.7487 -1.9546 -0.8930 27 1 2.7625 -1.9565 0.8869 28 1 5.0587 -1.7371 -2.0426 29 1 4.4985 -0.0987 -1.6305 30 1 7.0612 0.7003 -4.0618 31 1 4.6778 -3.5032 -0.4067 32 1 6.2005 -2.7756 0.1591 33 1 3.9047 -4.0912 5.2293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233411237.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:48 Heat of formation + Delta-G solvation = 58.153992 kcal Electronic energy + Delta-G solvation = -21418.402173 eV Core-core repulsion = 17952.104122 eV Total energy + Delta-G solvation = -3466.298051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 314.040 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.38937 -39.18141 -38.20343 -37.88637 -37.44738 -34.77070 -34.68980 -34.00505 -32.00432 -29.10303 -27.31549 -25.83701 -24.84911 -24.17921 -21.69166 -19.43842 -19.24183 -18.72378 -18.30292 -17.10543 -16.57298 -16.22229 -16.10402 -15.92653 -15.54407 -15.36009 -15.16187 -14.45200 -14.33496 -14.03805 -13.73916 -13.50458 -13.40435 -13.30949 -12.90258 -12.88428 -12.66040 -12.55389 -12.29194 -12.10228 -12.03956 -11.82117 -11.46403 -11.25371 -11.19026 -10.74050 -10.54188 -10.41693 -9.05756 -8.05264 -6.09914 -0.56593 -0.51581 0.20212 0.66818 1.50390 1.52101 1.57583 1.70315 1.77632 2.29134 2.50736 2.87940 2.93046 3.00543 3.20891 3.31037 3.60523 3.67668 3.96510 4.05208 4.20538 4.52753 4.60219 4.76087 4.87298 4.92080 5.03503 5.31403 5.34241 5.40912 5.83737 6.17769 6.27884 6.54021 6.59678 6.61745 7.05586 7.58139 9.04749 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.011022 B = 0.006192 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.735909 B = 4521.110197 C = 6199.626520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.240 3.760 3 C -0.021 4.021 4 C 0.055 3.945 5 N -0.520 5.520 6 C 0.202 3.798 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.012 3.988 10 N -0.932 5.932 11 Si 0.941 3.059 12 H -0.271 1.271 13 H -0.293 1.293 14 H -0.271 1.271 15 C 0.102 3.898 16 C -0.149 4.149 17 C 0.243 3.757 18 Cl 0.016 6.984 19 N -0.519 5.519 20 C 0.333 3.667 21 N -0.519 5.519 22 C 0.228 3.772 23 Cl 0.006 6.994 24 H 0.132 0.868 25 H 0.117 0.883 26 H 0.038 0.962 27 H 0.073 0.927 28 H -0.027 1.027 29 H 0.034 0.966 30 H 0.259 0.741 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.710 -8.240 12.629 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.076 4.076 3 C -0.061 4.061 4 C -0.075 4.075 5 N -0.244 5.244 6 C 0.077 3.923 7 C -0.544 4.544 8 H 0.092 0.908 9 C -0.186 4.186 10 N -0.573 5.573 11 Si 0.768 3.232 12 H -0.196 1.196 13 H -0.219 1.219 14 H -0.196 1.196 15 C -0.027 4.027 16 C -0.156 4.156 17 C 0.070 3.930 18 Cl 0.044 6.956 19 N -0.236 5.236 20 C 0.047 3.953 21 N -0.236 5.236 22 C 0.054 3.946 23 Cl 0.035 6.965 24 H 0.149 0.851 25 H 0.135 0.865 26 H 0.056 0.944 27 H 0.091 0.909 28 H -0.009 1.009 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -4.404 -8.051 13.601 16.407 hybrid contribution 1.274 0.130 -1.969 2.349 sum -3.129 -7.921 11.631 14.416 Atomic orbital electron populations 1.81184 1.14124 1.10165 1.11174 1.29435 0.95299 0.91638 0.91276 1.19378 0.79424 0.99574 1.07719 1.22219 0.89294 0.94871 1.01084 1.62062 1.05179 1.21467 1.35696 1.19582 0.95196 0.93905 0.83606 1.21486 0.97522 1.37226 0.98122 0.90789 1.25589 1.01277 0.96618 0.95161 1.70030 1.38464 1.45390 1.03430 0.85855 0.81433 0.78840 0.77059 1.19633 1.21925 1.19577 1.20893 1.02619 0.90795 0.88389 1.21088 0.94248 1.01096 0.99147 1.22034 0.90255 0.91600 0.89159 1.98490 1.27726 1.74712 1.94622 1.68009 1.20375 1.14013 1.21173 1.25852 0.82264 0.87312 0.99873 1.67952 1.34660 1.21765 0.99229 1.21996 0.89227 0.93044 0.90286 1.98454 1.60842 1.91246 1.45988 0.85056 0.86533 0.94398 0.90854 1.00889 0.94845 0.93172 0.92649 0.88409 0.72783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.08 18.54 20.01 0.37 -15.71 16 2 C 0.24 6.86 15.43 89.44 1.38 8.24 16 3 C -0.02 -0.54 5.73 28.79 0.16 -0.38 16 4 C 0.05 1.58 3.55 86.30 0.31 1.88 16 5 N -0.52 -17.52 4.40 -905.36 -3.98 -21.50 16 6 C 0.20 8.66 4.61 85.56 0.39 9.05 16 7 C -0.50 -24.09 8.61 25.60 0.22 -23.87 16 8 H 0.07 3.39 7.67 -2.91 -0.02 3.37 16 9 C 0.01 0.59 5.46 84.65 0.46 1.05 16 10 N -0.93 -50.76 13.29 21.45 0.28 -50.48 16 11 Si 0.94 40.66 29.54 68.60 2.03 42.69 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 15 C 0.10 3.16 4.39 85.56 0.38 3.54 16 16 C -0.15 -4.06 4.94 -19.64 -0.10 -4.16 16 17 C 0.24 6.55 7.33 84.70 0.62 7.17 16 18 Cl 0.02 0.45 27.64 -2.72 -0.08 0.37 16 19 N -0.52 -12.27 10.43 -190.90 -1.99 -14.26 16 20 C 0.33 6.28 12.28 180.89 2.22 8.50 16 21 N -0.52 -11.85 10.43 -190.89 -1.99 -13.84 16 22 C 0.23 5.77 6.24 84.70 0.53 6.29 16 23 Cl 0.01 0.15 24.75 -2.72 -0.07 0.08 16 24 H 0.13 3.03 8.14 -2.38 -0.02 3.01 16 25 H 0.12 3.25 6.35 -2.39 -0.02 3.24 16 26 H 0.04 1.12 7.92 -2.39 -0.02 1.10 16 27 H 0.07 1.99 4.44 -2.39 -0.01 1.98 16 28 H -0.03 -1.26 8.00 -2.39 -0.02 -1.28 16 29 H 0.03 1.50 6.03 -2.39 -0.01 1.49 16 30 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 31 H 0.06 1.67 7.01 -2.39 -0.02 1.65 16 32 H 0.10 3.32 6.21 -2.39 -0.01 3.31 16 33 H 0.26 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -58.08 317.05 2.33 -55.75 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: 1.18 Total: -0.42 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 6.58 Total: 17.31 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -7.31 Total: -115.79 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.14 Total: 0.45 kcal Total: -58.08 2.33 -55.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233411237.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.908 kcal (2) G-P(sol) polarization free energy of solvation -58.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds