Wall clock time and date at job start Tue Mar 31 2020 10:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47167 * 2 1 4 4 C 1.35686 * 116.99867 * 180.02562 * 3 2 1 5 5 N 1.32273 * 119.67353 * 359.72470 * 4 3 2 6 6 C 1.31943 * 121.65302 * 179.71192 * 5 4 3 7 7 C 1.38164 * 120.82138 * 0.57014 * 6 5 4 8 8 Br 1.89104 * 120.36626 * 179.74438 * 7 6 5 9 9 C 1.38859 * 119.27102 * 359.72149 * 7 6 5 10 10 C 1.38418 * 118.47433 * 359.97438 * 9 7 6 11 11 C 1.50703 * 120.43787 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46791 * 259.97977 * 11 10 9 13 13 C 1.46502 * 120.00286 * 269.99568 * 12 11 10 14 14 C 1.36936 * 120.00063 * 90.00261 * 12 11 10 15 15 H 1.08002 * 120.00371 * 22.05617 * 14 12 11 16 16 C 1.38818 * 120.00169 * 202.06311 * 14 12 11 17 17 N 1.31620 * 119.99756 * 11.25803 * 16 14 12 18 18 Si 1.86793 * 120.00039 * 191.26642 * 16 14 12 19 19 H 1.48498 * 109.47640 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47473 * 119.99687 * 18 16 14 21 21 H 1.48500 * 109.46958 * 239.99662 * 18 16 14 22 22 H 1.08995 * 109.47459 * 59.99614 * 1 2 3 23 23 H 1.09004 * 109.47453 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47182 * 300.00248 * 1 2 3 25 25 H 1.08994 * 109.46882 * 240.00229 * 2 1 3 26 26 H 1.08999 * 109.46756 * 120.00222 * 2 1 3 27 27 H 1.07995 * 119.58433 * 180.26473 * 6 5 4 28 28 H 1.08006 * 120.76586 * 180.02562 * 9 7 6 29 29 H 1.08995 * 109.47232 * 19.97717 * 11 10 9 30 30 H 1.08998 * 109.47265 * 139.98220 * 11 10 9 31 31 H 1.09003 * 109.47151 * 94.63584 * 13 12 11 32 32 H 1.08992 * 109.47520 * 214.63485 * 13 12 11 33 33 H 1.09006 * 109.47094 * 334.64002 * 13 12 11 34 34 H 0.96996 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3515 1.5250 -0.0005 5 7 4.1513 0.4714 0.0045 6 6 5.4645 0.5990 -0.0015 7 6 6.0544 1.8483 -0.0015 8 35 7.9380 2.0161 -0.0028 9 6 5.2490 2.9795 -0.0010 10 6 3.8751 2.8113 -0.0011 11 6 2.9594 4.0082 -0.0011 12 7 2.4717 4.2500 1.3590 13 6 1.2356 3.6118 1.8183 14 6 3.1713 5.0726 2.2011 15 1 3.8510 5.8079 1.7964 16 6 3.0070 4.9614 3.5750 17 7 2.3586 3.9329 4.0791 18 14 3.7058 6.2716 4.7083 19 1 4.3854 7.3149 3.8991 20 1 2.6042 6.8896 5.4891 21 1 4.6840 5.6515 5.6378 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 6.0859 -0.2843 -0.0014 28 1 5.6845 3.9678 -0.0014 29 1 3.5057 4.8836 -0.3522 30 1 2.1136 3.8186 -0.6620 31 1 1.4771 2.6871 2.3425 32 1 0.7083 4.2852 2.4939 33 1 0.6016 3.3881 0.9603 34 1 2.2435 3.8554 5.0391 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238447484.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:01 Heat of formation + Delta-G solvation = 3.504627 kcal Electronic energy + Delta-G solvation = -18895.681704 eV Core-core repulsion = 15875.417372 eV Total energy + Delta-G solvation = -3020.264332 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 314.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.70631 -39.00012 -37.55742 -34.37597 -33.73829 -32.59421 -31.99853 -29.86505 -28.02532 -27.61613 -25.21039 -23.94084 -23.17282 -22.14485 -19.49464 -18.80879 -17.93219 -17.31701 -16.88391 -16.36168 -15.60956 -15.50077 -15.11617 -14.99598 -14.78152 -14.36775 -13.91191 -13.51939 -13.36735 -13.13400 -12.98152 -12.82782 -12.63006 -12.36272 -12.16340 -12.10863 -11.98087 -11.87521 -11.47966 -11.39410 -10.75486 -10.60298 -10.57625 -9.28842 -8.80373 -7.82528 -5.29678 0.00289 0.19088 0.57036 1.45396 1.46887 1.56663 2.11781 2.48915 2.66295 3.26157 3.34298 3.83255 3.85474 3.94655 3.98334 4.11419 4.23933 4.41224 4.46261 4.64618 4.82128 4.86040 4.93559 4.98630 4.99812 5.16289 5.25016 5.36757 5.37641 5.65317 5.77224 6.27991 6.31482 6.73446 7.14572 7.85203 8.30652 9.20497 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.006863 C = 0.004472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.536997 B = 4079.106308 C = 6259.072780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.062 3.938 3 O -0.304 6.304 4 C 0.330 3.670 5 N -0.547 5.547 6 C 0.153 3.847 7 C -0.186 4.186 8 Br -0.026 7.026 9 C -0.015 4.015 10 C -0.163 4.163 11 C 0.195 3.805 12 N -0.602 5.602 13 C 0.196 3.804 14 C -0.256 4.256 15 H 0.078 0.922 16 C -0.053 4.053 17 N -0.937 5.937 18 Si 0.964 3.036 19 H -0.261 1.261 20 H -0.292 1.292 21 H -0.297 1.297 22 H 0.070 0.930 23 H 0.103 0.897 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.189 0.811 28 H 0.152 0.848 29 H 0.070 0.930 30 H 0.067 0.933 31 H -0.004 1.004 32 H 0.013 0.987 33 H 0.026 0.974 34 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 -7.356 -11.718 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.013 4.013 3 O -0.211 6.211 4 C 0.151 3.849 5 N -0.271 5.271 6 C -0.005 4.005 7 C -0.268 4.268 8 Br 0.058 6.942 9 C -0.042 4.042 10 C -0.170 4.170 11 C 0.068 3.932 12 N -0.323 5.323 13 C 0.051 3.949 14 C -0.386 4.386 15 H 0.096 0.904 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.793 3.207 19 H -0.185 1.185 20 H -0.219 1.219 21 H -0.224 1.224 22 H 0.089 0.911 23 H 0.122 0.878 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.205 0.795 28 H 0.170 0.830 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.014 0.986 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.175 -7.931 -11.550 15.311 hybrid contribution 0.321 0.920 1.230 1.569 sum 6.496 -7.011 -10.320 14.066 Atomic orbital electron populations 1.21803 0.91116 1.04149 1.03052 1.22762 0.96368 0.80365 1.01762 1.86324 1.16306 1.31600 1.86882 1.19873 0.84491 0.89742 0.90810 1.67431 1.06293 1.32773 1.20632 1.22701 0.89108 0.96403 0.92296 1.22711 0.92394 0.96938 1.14726 1.96631 1.01020 1.98583 1.97978 1.21397 0.91475 0.99067 0.92264 1.21264 0.95598 0.95709 1.04399 1.19864 0.94619 0.91988 0.86714 1.44295 1.23810 1.53272 1.10973 1.20379 0.85722 0.94840 0.93986 1.19644 1.21438 1.09898 0.87667 0.90380 1.25797 1.01127 0.99217 0.98636 1.70277 1.47120 1.30082 1.10849 0.85233 0.77361 0.79134 0.78965 1.18509 1.21904 1.22446 0.91066 0.87827 0.92894 0.90958 0.93266 0.79469 0.83038 0.91152 0.91495 0.98595 0.96806 0.95537 0.94554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 10.28 71.98 0.74 -2.61 16 2 C 0.06 1.84 6.03 71.98 0.43 2.27 16 3 O -0.30 -11.36 8.16 -90.04 -0.73 -12.09 16 4 C 0.33 12.78 7.47 84.78 0.63 13.41 16 5 N -0.55 -19.35 9.22 -308.87 -2.85 -22.19 16 6 C 0.15 4.70 10.94 84.66 0.93 5.62 16 7 C -0.19 -5.78 6.24 22.40 0.14 -5.64 16 8 Br -0.03 -0.66 33.73 -20.37 -0.69 -1.35 16 9 C -0.01 -0.51 9.58 22.46 0.22 -0.29 16 10 C -0.16 -6.35 5.49 -19.67 -0.11 -6.45 16 11 C 0.19 7.88 5.52 85.63 0.47 8.35 16 12 N -0.60 -30.08 2.91 -731.30 -2.13 -32.20 16 13 C 0.20 9.93 7.97 127.77 1.02 10.94 16 14 C -0.26 -13.81 9.68 84.04 0.81 -13.00 16 15 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 16 C -0.05 -2.96 5.13 84.86 0.44 -2.52 16 17 N -0.94 -56.10 10.56 21.65 0.23 -55.87 16 18 Si 0.96 45.17 29.57 68.60 2.03 47.20 16 19 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 22 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 24 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 26 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 27 H 0.19 4.43 8.06 -2.91 -0.02 4.40 16 28 H 0.15 4.89 8.06 -2.91 -0.02 4.87 16 29 H 0.07 2.60 7.92 -2.39 -0.02 2.58 16 30 H 0.07 2.52 7.59 -2.39 -0.02 2.50 16 31 H 0.00 -0.25 7.40 -2.39 -0.02 -0.26 16 32 H 0.01 0.74 7.19 -2.39 -0.02 0.72 16 33 H 0.03 1.17 7.68 -2.38 -0.02 1.16 16 34 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -64.61 310.49 2.67 -61.94 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: 1.09 Total: 4.48 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.72 Total: 10.09 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -4.75 Total: -110.27 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.73 Total: -12.09 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -0.69 Total: -1.35 kcal Total: -64.61 2.67 -61.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238447484.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.444 kcal (2) G-P(sol) polarization free energy of solvation -64.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds