Wall clock time and date at job start Tue Mar 31 2020 11:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35609 * 117.00014 * 2 1 4 4 N 1.32153 * 119.76000 * 0.02562 * 3 2 1 5 5 C 1.31960 * 121.79249 * 179.97438 * 4 3 2 6 6 C 1.38322 * 121.09405 * 0.02562 * 5 4 3 7 7 Cl 1.73603 * 120.30127 * 180.02562 * 6 5 4 8 8 C 1.38613 * 119.39286 * 359.74523 * 6 5 4 9 9 C 1.39623 * 118.35516 * 0.49921 * 8 6 5 10 10 C 1.48225 * 120.55265 * 179.78054 * 9 8 6 11 11 C 1.39858 * 119.53764 * 129.74344 * 10 9 8 12 12 C 1.37693 * 121.16791 * 180.02562 * 11 10 9 13 13 C 1.39598 * 120.18784 * 359.95667 * 12 11 10 14 14 C 1.43203 * 120.44984 * 180.02562 * 13 12 11 15 15 N 7.26599 * 141.76573 * 178.72117 * 2 1 3 16 16 C 1.46547 * 119.09624 * 359.75599 * 13 12 11 17 17 C 1.40847 * 120.55508 * 180.27817 * 16 13 12 18 18 H 1.08005 * 119.99378 * 336.13621 * 17 16 13 19 19 C 1.40222 * 120.00202 * 156.13570 * 17 16 13 20 20 N 1.30655 * 120.00234 * 341.80269 * 19 17 16 21 21 Si 1.86806 * 120.00012 * 161.80075 * 19 17 16 22 22 H 1.48502 * 109.46881 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46930 * 119.99953 * 21 19 17 24 24 H 1.48497 * 109.47372 * 240.00202 * 21 19 17 25 25 C 1.38652 * 119.54174 * 309.71489 * 10 9 8 26 26 H 1.08997 * 109.47206 * 300.00472 * 1 2 3 27 27 H 1.09010 * 109.47048 * 60.00218 * 1 2 3 28 28 H 1.08999 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.45140 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.81999 * 180.24982 * 8 6 5 31 31 H 1.08000 * 119.42120 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.90698 * 179.97438 * 12 11 10 33 33 H 0.97011 * 120.00145 * 185.03181 * 20 19 17 34 34 H 1.08001 * 120.13493 * 0.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 7 1.3202 2.3136 0.0005 5 6 1.8772 3.5099 0.0010 6 6 3.2526 3.6575 0.0005 7 17 3.9635 5.2413 0.0019 8 6 4.0579 2.5293 0.0048 9 6 3.4431 1.2757 -0.0011 10 6 4.2574 0.0372 -0.0018 11 6 3.9826 -0.9691 0.9298 12 6 4.7181 -2.1328 0.9596 13 6 5.7592 -2.3286 0.0505 14 6 6.5273 -3.5370 0.0760 15 7 7.1363 -4.4956 0.1004 16 6 6.0516 -1.2834 -0.9341 17 6 7.0913 -1.4513 -1.8694 18 1 7.9077 -2.1247 -1.6540 19 6 7.0663 -0.7443 -3.0801 20 7 5.9487 -0.2188 -3.5068 21 14 8.6308 -0.5536 -4.0828 22 1 9.7510 -1.2362 -3.3869 23 1 8.4369 -1.1625 -5.4232 24 1 8.9481 0.8890 -4.2357 25 6 5.2804 -0.1079 -0.9264 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.2488 4.3882 0.0010 30 1 5.1342 2.6178 0.0086 31 1 3.1800 -0.8307 1.6391 32 1 4.4886 -2.8964 1.6881 33 1 5.9144 0.2069 -4.3779 34 1 5.4815 0.6773 -1.6402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242507922.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:41 Heat of formation + Delta-G solvation = 18.215986 kcal Electronic energy + Delta-G solvation = -22370.827178 eV Core-core repulsion = 18872.937384 eV Total energy + Delta-G solvation = -3497.889794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.056 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.75148 -39.37857 -38.94192 -37.41986 -37.00904 -35.91109 -34.19029 -32.15396 -31.61414 -30.23002 -28.14850 -27.48386 -25.44712 -24.04749 -22.78291 -22.63645 -19.58838 -19.31730 -18.94104 -18.06304 -17.59872 -16.97736 -16.81715 -15.98585 -15.67462 -15.26003 -14.98331 -14.90257 -14.74015 -14.50591 -14.46183 -14.09511 -13.59972 -13.46439 -13.37760 -13.15250 -12.99404 -12.83633 -12.73790 -12.46417 -12.26531 -12.12083 -11.89447 -11.85760 -11.54695 -11.24410 -10.83093 -10.73885 -9.63030 -9.48251 -8.93175 -8.79376 -6.51711 -0.24960 0.04888 0.52385 1.01431 1.06289 1.36903 1.49124 1.51336 2.05732 2.12806 2.15287 2.32420 2.63670 2.67901 3.22967 3.59213 3.65393 3.73069 3.75185 4.05119 4.39364 4.39995 4.50621 4.51251 4.70183 4.77769 4.83494 4.86295 4.97967 5.15227 5.17832 5.28863 5.44953 5.77613 5.94425 6.04971 6.13819 6.23275 6.43348 6.66462 6.67021 6.78890 6.98791 8.08326 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.005053 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.323886 B = 5539.518062 C = 7139.261699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.326 3.674 4 N -0.530 5.530 5 C 0.151 3.849 6 C -0.123 4.123 7 Cl -0.046 7.046 8 C -0.028 4.028 9 C -0.102 4.102 10 C -0.002 4.002 11 C -0.210 4.210 12 C -0.025 4.025 13 C -0.206 4.206 14 C 0.306 3.694 15 N -0.531 5.531 16 C 0.129 3.871 17 C -0.462 4.462 18 H 0.071 0.929 19 C 0.048 3.952 20 N -0.785 5.785 21 Si 0.975 3.025 22 H -0.266 1.266 23 H -0.262 1.262 24 H -0.252 1.252 25 C -0.157 4.157 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.199 0.801 30 H 0.152 0.848 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.300 0.700 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.619 12.219 3.277 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.211 6.211 3 C 0.147 3.853 4 N -0.254 5.254 5 C -0.006 4.006 6 C -0.153 4.153 7 Cl -0.017 7.017 8 C -0.054 4.054 9 C -0.105 4.105 10 C -0.003 4.003 11 C -0.229 4.229 12 C -0.046 4.046 13 C -0.212 4.212 14 C -0.003 4.003 15 N -0.211 5.211 16 C 0.124 3.876 17 C -0.490 4.490 18 H 0.089 0.911 19 C -0.173 4.173 20 N -0.408 5.408 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.187 1.187 24 H -0.175 1.175 25 C -0.177 4.177 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.216 0.784 30 H 0.170 0.830 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.111 0.889 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.553 10.681 3.145 14.671 hybrid contribution 1.204 0.419 -0.655 1.433 sum -8.349 11.101 2.490 14.111 Atomic orbital electron populations 1.23128 0.75845 1.04624 1.02559 1.86395 1.24253 1.23654 1.86786 1.20001 0.88573 0.85288 0.91461 1.67500 1.39466 0.98273 1.20120 1.22853 0.90810 0.94719 0.92168 1.21706 0.94514 0.87548 1.11503 1.98363 1.83822 1.22360 1.97151 1.21576 1.01410 0.89100 0.93291 1.18988 0.90588 0.94246 1.06670 1.18362 0.94208 0.92219 0.95552 1.20278 1.04207 0.95024 1.03393 1.20629 0.91944 0.96673 0.95329 1.17180 1.03989 0.90701 1.09379 1.26000 0.91493 0.92227 0.90544 1.80994 1.12980 1.13945 1.13210 1.18585 0.90694 0.89150 0.89175 1.19858 1.06319 1.21493 1.01319 0.91124 1.26723 1.00407 0.91494 0.98720 1.69709 1.27731 1.24475 1.18856 0.85248 0.77545 0.79910 0.77814 1.18985 1.18693 1.17544 1.21238 0.98311 0.97916 1.00198 0.91529 0.92336 0.86522 0.78394 0.83029 0.86375 0.85645 0.88881 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.38 113.37 1.18 1.90 16 2 O -0.30 -9.64 8.79 -89.20 -0.78 -10.42 16 3 C 0.33 10.48 7.39 85.07 0.63 11.11 16 4 N -0.53 -14.58 9.21 -308.05 -2.84 -17.42 16 5 C 0.15 3.48 10.97 84.69 0.93 4.41 16 6 C -0.12 -3.08 6.34 22.38 0.14 -2.94 16 7 Cl -0.05 -0.97 28.98 -2.72 -0.08 -1.04 16 8 C -0.03 -0.85 9.43 22.69 0.21 -0.64 16 9 C -0.10 -3.53 5.46 -19.86 -0.11 -3.64 16 10 C 0.00 -0.07 5.29 -20.13 -0.11 -0.17 16 11 C -0.21 -8.04 8.71 22.53 0.20 -7.84 16 12 C -0.03 -1.01 9.74 22.47 0.22 -0.79 16 13 C -0.21 -9.53 5.95 -19.54 -0.12 -9.65 16 14 C 0.31 14.60 14.27 88.33 1.26 15.86 16 15 N -0.53 -26.01 18.54 19.00 0.35 -25.66 16 16 C 0.13 6.32 5.74 -19.90 -0.11 6.21 16 17 C -0.46 -23.09 8.58 23.39 0.20 -22.89 16 18 H 0.07 3.65 7.36 -2.91 -0.02 3.63 16 19 C 0.05 2.16 5.14 85.35 0.44 2.60 16 20 N -0.78 -36.08 10.96 21.87 0.24 -35.84 16 21 Si 0.97 35.19 29.60 68.60 2.03 37.22 16 22 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 24 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 25 C -0.16 -7.15 8.15 22.94 0.19 -6.96 16 26 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 27 H 0.06 1.25 8.11 -2.38 -0.02 1.24 16 28 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.12 4.05 7.62 -2.91 -0.02 4.03 16 32 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 33 H 0.30 12.26 8.30 -92.70 -0.77 11.49 16 34 H 0.12 5.57 6.14 -2.91 -0.02 5.55 16 Total: -1.00 -56.26 326.89 5.23 -51.03 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.16 Total: 15.55 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 5.15 Total: -13.42 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.24 Total: -78.92 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.78 Total: -10.42 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.03 Total: 37.22 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.04 kcal Total: -56.26 5.23 -51.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242507922.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.247 kcal (2) G-P(sol) polarization free energy of solvation -56.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds