Wall clock time and date at job start Tue Mar 31 2020 10:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.34873 * 125.05592 * 299.97028 * 3 2 1 5 5 C 1.39080 * 113.62206 * 180.24326 * 4 3 2 6 6 C 1.47287 * 122.96589 * 179.77560 * 5 4 3 7 7 O 1.21637 * 120.00161 * 359.73115 * 6 5 4 8 8 N 1.34781 * 120.00328 * 179.73027 * 6 5 4 9 9 C 1.39927 * 120.00515 * 175.49077 * 8 6 5 10 10 C 1.38939 * 120.00228 * 35.13025 * 9 8 6 11 11 C 1.37999 * 119.99615 * 180.02562 * 10 9 8 12 12 C 1.38912 * 120.00521 * 0.02562 * 11 10 9 13 13 O 1.35778 * 119.99741 * 179.97438 * 12 11 10 14 14 C 1.34820 * 116.99970 * 5.35854 * 13 12 11 15 15 H 1.07996 * 119.99720 * 354.95213 * 14 13 12 16 16 C 1.38632 * 119.99835 * 174.96319 * 14 13 12 17 17 N 1.31574 * 120.00045 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99669 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47403 * 59.99798 * 18 16 14 20 20 H 1.48500 * 109.46811 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47213 * 299.99519 * 18 16 14 22 22 C 1.38911 * 120.00382 * 0.25708 * 12 11 10 23 23 C 1.37998 * 120.00094 * 359.45057 * 22 12 11 24 24 C 1.36584 * 114.06868 * 359.50400 * 5 4 3 25 25 S 1.70591 * 110.55223 * 0.26975 * 24 5 4 26 26 H 1.07999 * 123.18737 * 0.02562 * 4 3 2 27 27 H 0.97002 * 119.99516 * 355.48590 * 8 6 5 28 28 H 1.08002 * 119.99925 * 0.02562 * 10 9 8 29 29 H 1.08006 * 119.99824 * 180.02562 * 11 10 9 30 30 H 0.96998 * 119.99656 * 180.02562 * 17 16 14 31 31 H 1.07995 * 119.99513 * 179.72185 * 22 12 11 32 32 H 1.08003 * 120.00240 * 180.27544 * 23 22 12 33 33 H 1.07999 * 124.72218 * 180.29132 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3429 -0.5505 0.9564 5 6 4.7061 -0.4075 0.7203 6 6 5.7368 -0.9277 1.6348 7 8 5.4099 -1.5086 2.6523 8 7 7.0422 -0.7601 1.3444 9 6 8.0204 -1.1697 2.2572 10 6 7.8171 -2.3064 3.0299 11 6 8.7817 -2.7099 3.9305 12 6 9.9556 -1.9794 4.0650 13 8 10.9043 -2.3763 4.9516 14 6 10.6955 -3.5460 5.5887 15 1 9.7682 -4.0808 5.4457 16 6 11.6711 -4.0620 6.4277 17 7 12.8009 -3.4106 6.6017 18 14 11.3815 -5.6823 7.3110 19 1 11.1616 -6.7586 6.3118 20 1 12.5680 -6.0126 8.1407 21 1 10.1849 -5.5640 8.1825 22 6 10.1564 -0.8397 3.2968 23 6 9.1946 -0.4393 2.3917 24 6 5.0046 0.2527 -0.4375 25 16 3.5767 0.7138 -1.2492 26 1 2.9428 -1.0522 1.8252 27 1 7.3036 -0.3555 0.5024 28 1 6.9043 -2.8741 2.9256 29 1 8.6239 -3.5938 4.5309 30 1 13.4836 -3.7719 7.1884 31 1 11.0671 -0.2694 3.4047 32 1 9.3526 0.4444 1.7912 33 1 6.0052 0.4545 -0.7901 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361319875.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:15 Heat of formation + Delta-G solvation = 37.053125 kcal Electronic energy + Delta-G solvation = -21172.514299 eV Core-core repulsion = 17677.485051 eV Total energy + Delta-G solvation = -3495.029248 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.051 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54151 -38.97734 -38.01137 -36.78111 -36.29895 -34.13845 -32.23800 -30.88489 -30.24585 -28.00063 -25.98048 -25.31697 -23.52742 -22.26417 -21.05794 -19.88847 -19.49512 -18.11779 -17.63108 -17.33734 -16.54576 -15.99190 -15.32295 -14.87197 -14.60418 -14.52273 -14.34333 -14.08989 -13.68784 -13.60958 -13.46897 -13.14536 -12.91982 -12.90929 -12.85405 -12.54282 -11.78834 -11.73827 -11.58649 -11.54081 -11.02849 -10.80148 -10.46945 -9.92265 -9.75470 -9.51251 -9.22938 -9.16314 -8.72777 -8.25057 -6.99324 -6.46885 -4.04445 -0.18450 0.56684 1.14469 1.23123 2.11763 2.22335 2.42438 2.78896 3.07009 3.13590 3.14200 3.17470 3.26526 3.48962 3.96271 4.35017 4.50230 4.65412 4.68369 5.07395 5.16977 5.21915 5.38195 5.59272 5.63175 5.71820 6.06951 6.12569 6.28795 6.67112 6.80623 6.95101 6.97460 7.03874 7.26654 7.40368 7.57970 7.72250 7.98040 8.22057 8.98752 9.67198 10.70738 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.030155 B = 0.002355 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.315408 B =11884.279849 C =12676.906382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.282 3.718 3 C -0.175 4.175 4 C -0.012 4.012 5 C -0.147 4.147 6 C 0.566 3.434 7 O -0.517 6.517 8 N -0.650 5.650 9 C 0.029 3.971 10 C -0.061 4.061 11 C -0.221 4.221 12 C 0.148 3.852 13 O -0.175 6.175 14 C -0.391 4.391 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.862 5.862 18 Si 0.941 3.059 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.179 4.179 23 C -0.090 4.090 24 C -0.201 4.201 25 S 0.285 5.715 26 H 0.166 0.834 27 H 0.400 0.600 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.271 0.729 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.502 8.208 -17.092 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.078 5.078 2 C -0.034 4.034 3 C -0.295 4.295 4 C -0.046 4.046 5 C -0.164 4.164 6 C 0.352 3.648 7 O -0.394 6.394 8 N -0.294 5.294 9 C -0.063 4.063 10 C -0.081 4.081 11 C -0.241 4.241 12 C 0.093 3.907 13 O -0.078 6.078 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.496 5.496 18 Si 0.766 3.234 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.199 4.199 23 C -0.110 4.110 24 C -0.341 4.341 25 S 0.553 5.447 26 H 0.183 0.817 27 H 0.235 0.765 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.133 0.867 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.358 8.662 -17.524 24.859 hybrid contribution 0.841 -1.333 1.361 2.082 sum -14.517 7.328 -16.163 22.928 Atomic orbital electron populations 1.81323 1.11079 1.08453 1.06953 1.24205 0.90814 0.93956 0.94426 1.19859 0.89651 1.15478 1.04470 1.20365 0.90835 0.95170 0.98249 1.19060 0.94274 1.05954 0.97105 1.17545 0.81938 0.80128 0.85205 1.90834 1.81251 1.40987 1.26301 1.42967 1.04558 1.61462 1.20441 1.17195 0.91031 0.98272 0.99830 1.20862 0.98386 0.93861 0.95007 1.21112 0.94963 1.03942 1.04096 1.19431 0.88944 0.93121 0.89159 1.83973 1.40136 1.37349 1.46316 1.21300 1.03722 0.96791 1.24916 0.88997 1.25291 0.94578 0.99482 0.97139 1.70034 1.05862 1.38239 1.35512 0.85777 0.78230 0.80227 0.79212 1.19457 1.20282 1.19428 1.19989 1.01009 0.98883 0.99973 1.20340 0.93359 0.98208 0.99093 1.26229 1.05544 1.03041 0.99294 1.83199 0.91839 1.50351 1.19314 0.81693 0.76521 0.85603 0.85140 0.91935 0.86005 0.86704 0.79978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.58 18.54 41.84 0.78 -3.81 16 2 C 0.28 2.59 15.79 -22.47 -0.35 2.24 16 3 C -0.17 -1.27 6.24 -38.85 -0.24 -1.51 16 4 C -0.01 -0.10 9.71 -40.46 -0.39 -0.49 16 5 C -0.15 -1.28 5.82 -106.50 -0.62 -1.90 16 6 C 0.57 7.25 7.63 -12.58 -0.10 7.16 16 7 O -0.52 -8.81 14.13 5.24 0.07 -8.74 16 8 N -0.65 -7.82 5.30 -10.83 -0.06 -7.88 16 9 C 0.03 0.48 6.30 -83.64 -0.53 -0.05 16 10 C -0.06 -1.18 8.69 -39.41 -0.34 -1.52 16 11 C -0.22 -4.83 9.16 -39.42 -0.36 -5.20 16 12 C 0.15 3.48 6.65 -39.08 -0.26 3.22 16 13 O -0.17 -4.89 9.76 -0.01 0.00 -4.89 16 14 C -0.39 -10.80 9.48 30.88 0.29 -10.51 16 15 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -24.93 13.67 55.48 0.76 -24.18 16 18 Si 0.94 20.40 29.55 -169.99 -5.02 15.37 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 C -0.18 -3.55 9.98 -39.42 -0.39 -3.95 16 23 C -0.09 -1.46 9.96 -39.41 -0.39 -1.85 16 24 C -0.20 -1.03 10.40 30.13 0.31 -0.72 16 25 S 0.29 1.25 23.03 -107.50 -2.48 -1.23 16 26 H 0.17 1.46 7.99 -52.49 -0.42 1.04 16 27 H 0.40 3.10 7.29 -40.82 -0.30 2.80 16 28 H 0.13 2.38 6.22 -52.49 -0.33 2.06 16 29 H 0.13 2.88 5.63 -52.48 -0.30 2.58 16 30 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.18 0.40 6.99 -52.49 -0.37 0.03 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -33.75 320.33 -6.55 -40.30 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -1.96 Total: 4.31 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -3.47 Total: -14.10 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 1.48 Total: -35.86 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.07 Total: -13.62 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.48 Total: -1.23 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.75 -6.55 -40.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361319875.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.349 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds