Wall clock time and date at job start Tue Mar 31 2020 10:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99698 * 2 1 4 4 H 1.48504 * 109.47368 * 270.00233 * 3 2 1 5 5 H 1.48497 * 109.47133 * 30.00552 * 3 2 1 6 6 H 1.48500 * 109.47203 * 150.00151 * 3 2 1 7 7 C 1.37878 * 120.00562 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99261 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00399 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46995 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46776 * 180.02562 * 11 10 9 13 13 C 1.38402 * 119.99662 * 179.97438 * 12 11 10 14 14 N 1.29853 * 124.84477 * 0.02612 * 13 12 11 15 15 C 1.31716 * 117.03220 * 180.02562 * 14 13 12 16 16 Cl 1.73603 * 122.85333 * 179.97438 * 15 14 13 17 17 C 1.34865 * 114.29809 * 0.02562 * 15 14 13 18 18 C 1.47810 * 126.02580 * 179.97438 * 17 15 14 19 19 N 1.33874 * 126.34116 * 0.02562 * 18 17 15 20 20 N 1.28555 * 109.82774 * 179.73748 * 19 18 17 21 21 N 1.28902 * 109.78737 * 359.97438 * 20 19 18 22 22 H 0.97001 * 126.41069 * 179.97438 * 21 20 19 23 23 N 1.32202 * 126.34538 * 179.70733 * 18 17 15 24 24 S 1.70940 * 124.84390 * 180.31272 * 13 12 11 25 25 H 0.96999 * 120.00052 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46936 * 60.00081 * 9 7 2 27 27 H 1.09002 * 109.47651 * 300.00662 * 9 7 2 28 28 H 1.08997 * 109.46649 * 60.00634 * 10 9 7 29 29 H 1.09003 * 109.46767 * 300.00122 * 10 9 7 30 30 H 1.08992 * 109.47213 * 59.99799 * 11 10 9 31 31 H 1.09005 * 109.46734 * 299.99864 * 11 10 9 32 32 H 0.97001 * 120.00281 * 359.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0009 12 7 6.0400 -4.0175 -0.0014 13 6 7.4007 -4.2704 -0.0020 14 7 8.3248 -3.3581 -0.0017 15 6 9.5751 -3.7725 -0.0029 16 17 10.9279 -2.6845 -0.0033 17 6 9.7151 -5.1139 -0.0048 18 6 10.9944 -5.8544 -0.0070 19 7 12.2212 -5.3186 -0.0069 20 7 13.1048 -6.2523 -0.0037 21 7 12.5238 -7.4029 -0.0010 22 1 12.9611 -8.2688 0.0014 23 7 11.1390 -7.1685 -0.0035 24 16 8.1047 -5.8281 -0.0103 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8746 -0.6798 -0.8911 28 1 3.6580 -3.1504 -0.8908 29 1 3.6586 -3.1500 0.8893 30 1 5.9149 -2.1224 0.8889 31 1 5.9149 -2.1225 -0.8910 32 1 5.4097 -4.7549 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676619.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:28 Heat of formation + Delta-G solvation = 159.393611 kcal Electronic energy + Delta-G solvation = -19714.731808 eV Core-core repulsion = 16287.160295 eV Total energy + Delta-G solvation = -3427.571514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 314.041 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.45544 -40.10209 -37.15269 -36.31854 -34.36002 -33.60164 -33.23254 -31.72387 -29.60117 -27.54345 -24.94198 -24.73580 -23.53224 -22.55268 -20.63560 -20.29307 -19.08484 -18.78531 -16.87235 -16.85835 -16.57437 -15.90222 -15.74744 -15.31225 -14.66965 -14.54947 -14.26220 -13.85427 -12.83653 -12.75829 -12.56559 -12.21366 -12.04051 -11.82573 -11.74698 -11.44836 -11.20905 -11.12863 -10.96980 -10.91052 -10.25042 -10.12614 -9.93139 -9.81913 -9.75774 -9.50746 -9.29858 -8.60551 -7.94320 -6.11133 -4.10645 0.02630 0.54062 0.76350 0.95649 1.77377 1.91433 1.97495 2.61640 3.00783 3.28095 3.36224 3.39368 3.45455 4.03790 4.39960 4.58954 4.84046 5.17563 5.21686 5.22676 5.30488 5.49246 5.85210 6.15588 6.20440 6.29926 6.59790 6.65259 6.79963 7.13518 7.26927 7.53577 7.69539 7.79997 8.44003 8.92059 9.50624 11.01911 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.031278 B = 0.002509 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.969760 B =11156.586123 C =12025.800768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.115 4.115 11 C 0.121 3.879 12 N -0.667 5.667 13 C 0.347 3.653 14 N -0.547 5.547 15 C 0.241 3.759 16 Cl 0.024 6.976 17 C -0.241 4.241 18 C 0.304 3.696 19 N -0.281 5.281 20 N 0.011 4.989 21 N -0.298 5.298 22 H 0.470 0.530 23 N -0.298 5.298 24 S 0.185 5.815 25 H 0.264 0.736 26 H 0.020 0.980 27 H 0.016 0.984 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.778 -15.948 0.015 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.153 4.153 11 C -0.003 4.003 12 N -0.303 5.303 13 C -0.025 4.025 14 N -0.275 5.275 15 C 0.073 3.927 16 Cl 0.052 6.948 17 C -0.370 4.370 18 C 0.022 3.978 19 N -0.160 5.160 20 N 0.015 4.985 21 N -0.145 5.145 22 H 0.324 0.676 23 N -0.143 5.143 24 S 0.435 5.565 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 23.606 -16.131 0.012 28.591 hybrid contribution 0.680 0.810 -0.016 1.058 sum 24.286 -15.321 -0.004 28.715 Atomic orbital electron populations 1.69905 1.06334 1.27041 1.50728 1.25028 0.94757 0.99271 0.94390 0.86780 0.80411 0.83504 0.78631 1.20209 1.21343 1.18838 1.21060 0.89197 0.94538 1.51425 0.90996 1.19487 0.97359 0.91056 0.96822 1.21754 0.90046 1.01500 1.02023 1.21938 0.96337 0.79275 1.02799 1.44635 0.99312 1.10969 1.75385 1.23493 0.90821 0.93104 0.95035 1.65892 0.97878 1.34541 1.29196 1.20255 0.88658 0.87259 0.96532 1.98443 1.37081 1.63312 1.95922 1.21414 0.92854 0.93082 1.29611 1.21856 0.91894 0.87378 0.96689 1.75737 0.96552 1.23008 1.20730 1.78353 1.22601 0.88530 1.09055 1.50925 1.02944 1.10001 1.50650 0.67580 1.78992 0.93343 1.15225 1.26712 1.84068 0.94125 1.04886 1.73440 0.92629 0.96181 0.96609 0.91864 0.91843 0.90949 0.90965 0.74218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.16 27.47 -169.99 -4.67 16.49 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.52 -14.24 9.66 -34.44 -0.33 -14.57 16 8 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 9 C -0.01 -0.20 4.04 -27.89 -0.11 -0.31 16 10 C -0.11 -1.93 5.27 -26.73 -0.14 -2.07 16 11 C 0.12 1.72 5.94 -4.04 -0.02 1.70 16 12 N -0.67 -7.73 5.70 -62.32 -0.36 -8.08 16 13 C 0.35 4.25 8.07 -87.75 -0.71 3.54 16 14 N -0.55 -7.79 10.11 -12.08 -0.12 -7.91 16 15 C 0.24 3.25 7.35 -18.80 -0.14 3.11 16 16 Cl 0.02 0.31 27.55 -51.86 -1.43 -1.12 16 17 C -0.24 -2.97 6.51 -36.86 -0.24 -3.21 16 18 C 0.30 3.66 8.10 -156.39 -1.27 2.39 16 19 N -0.28 -3.43 10.76 32.04 0.34 -3.09 16 20 N 0.01 0.11 13.42 60.35 0.81 0.92 16 21 N -0.30 -2.19 8.44 60.35 0.51 -1.68 16 22 H 0.47 1.16 8.96 -331.91 -2.98 -1.82 16 23 N -0.30 -3.09 12.92 32.05 0.41 -2.68 16 24 S 0.19 1.88 23.20 -107.50 -2.49 -0.62 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 27 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.42 3.79 8.60 -40.82 -0.35 3.44 16 LS Contribution 315.89 15.07 4.76 4.76 Total: -1.00 -32.49 315.89 -9.89 -42.38 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -5.37 Total: -5.40 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -3.06 Total: -7.62 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 2.37 Total: -48.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.49 Total: -0.62 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.43 Total: -1.12 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.49 -9.89 -42.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676619.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.773 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds