Wall clock time and date at job start Tue Mar 31 2020 10:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99698 * 2 1 4 4 H 1.48504 * 109.47368 * 270.00233 * 3 2 1 5 5 H 1.48497 * 109.47133 * 30.00552 * 3 2 1 6 6 H 1.48500 * 109.47203 * 150.00151 * 3 2 1 7 7 C 1.37878 * 120.00562 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99261 * 359.97438 * 7 2 1 9 9 C 1.50691 * 120.00399 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46995 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46776 * 180.02562 * 11 10 9 13 13 C 1.38402 * 119.99662 * 179.97438 * 12 11 10 14 14 N 1.29853 * 124.84477 * 0.02612 * 13 12 11 15 15 C 1.31716 * 117.03220 * 180.02562 * 14 13 12 16 16 Cl 1.73603 * 122.85333 * 179.97438 * 15 14 13 17 17 C 1.34865 * 114.29809 * 0.02562 * 15 14 13 18 18 C 1.47810 * 126.02580 * 179.97438 * 17 15 14 19 19 N 1.33874 * 126.34116 * 0.02562 * 18 17 15 20 20 N 1.28555 * 109.82774 * 179.73748 * 19 18 17 21 21 N 1.28902 * 109.78737 * 359.97438 * 20 19 18 22 22 H 0.97001 * 126.41069 * 179.97438 * 21 20 19 23 23 N 1.32202 * 126.34538 * 179.70733 * 18 17 15 24 24 S 1.70940 * 124.84390 * 180.31272 * 13 12 11 25 25 H 0.96999 * 120.00052 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46936 * 60.00081 * 9 7 2 27 27 H 1.09002 * 109.47651 * 300.00662 * 9 7 2 28 28 H 1.08997 * 109.46649 * 60.00634 * 10 9 7 29 29 H 1.09003 * 109.46767 * 300.00122 * 10 9 7 30 30 H 1.08992 * 109.47213 * 59.99799 * 11 10 9 31 31 H 1.09005 * 109.46734 * 299.99864 * 11 10 9 32 32 H 0.97001 * 120.00281 * 359.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5517 -2.6363 -0.0009 12 7 6.0400 -4.0175 -0.0014 13 6 7.4007 -4.2704 -0.0020 14 7 8.3248 -3.3581 -0.0017 15 6 9.5751 -3.7725 -0.0029 16 17 10.9279 -2.6845 -0.0033 17 6 9.7151 -5.1139 -0.0048 18 6 10.9944 -5.8544 -0.0070 19 7 12.2212 -5.3186 -0.0069 20 7 13.1048 -6.2523 -0.0037 21 7 12.5238 -7.4029 -0.0010 22 1 12.9611 -8.2688 0.0014 23 7 11.1390 -7.1685 -0.0035 24 16 8.1047 -5.8281 -0.0103 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6803 0.8889 27 1 3.8746 -0.6798 -0.8911 28 1 3.6580 -3.1504 -0.8908 29 1 3.6586 -3.1500 0.8893 30 1 5.9149 -2.1224 0.8889 31 1 5.9149 -2.1225 -0.8910 32 1 5.4097 -4.7549 -0.0014 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676619.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:28 Heat of formation + Delta-G solvation = 136.226935 kcal Electronic energy + Delta-G solvation = -19715.736391 eV Core-core repulsion = 16287.160295 eV Total energy + Delta-G solvation = -3428.576096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 314.041 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.24571 -41.04668 -38.16927 -37.35839 -35.59433 -34.91560 -34.06518 -33.44274 -30.62213 -29.04484 -26.07125 -25.51871 -24.79955 -23.60317 -22.19068 -21.18772 -20.06053 -19.65092 -18.84575 -17.66803 -17.50610 -16.86253 -16.78567 -16.48462 -16.03131 -15.87412 -15.36001 -14.92212 -14.71441 -14.12583 -13.78112 -13.37210 -13.09934 -13.07365 -12.72165 -12.64218 -12.55672 -12.31063 -11.91377 -11.86283 -11.79226 -11.73210 -11.59023 -11.30450 -10.90117 -10.88928 -10.73923 -10.36577 -8.85785 -8.27272 -6.31004 -0.85722 -0.33382 -0.03078 0.05364 0.99920 1.08263 1.15413 1.39315 1.41280 1.52380 1.68494 2.09318 2.38323 2.64827 3.08973 3.20359 3.64856 3.97426 4.07527 4.23754 4.29831 4.33790 4.52910 4.91873 4.92596 5.06560 5.44666 5.58574 5.59016 5.67946 5.69056 5.88804 6.29462 6.66390 6.77757 7.00714 7.33927 8.89010 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.031278 B = 0.002509 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.969760 B =11156.586123 C =12025.800768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.244 1.244 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.011 4.011 10 C -0.103 4.103 11 C 0.138 3.862 12 N -0.662 5.662 13 C 0.331 3.669 14 N -0.574 5.574 15 C 0.223 3.777 16 Cl 0.019 6.981 17 C -0.248 4.248 18 C 0.290 3.710 19 N -0.307 5.307 20 N 0.010 4.990 21 N -0.267 5.267 22 H 0.490 0.510 23 N -0.300 5.300 24 S 0.258 5.742 25 H 0.265 0.735 26 H 0.022 0.978 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.837 -17.082 0.005 30.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.168 1.168 7 C -0.567 4.567 8 H 0.056 0.944 9 C -0.049 4.049 10 C -0.141 4.141 11 C 0.013 3.987 12 N -0.300 5.300 13 C -0.040 4.040 14 N -0.302 5.302 15 C 0.055 3.945 16 Cl 0.047 6.953 17 C -0.377 4.377 18 C 0.007 3.993 19 N -0.185 5.185 20 N 0.014 4.986 21 N -0.119 5.119 22 H 0.349 0.651 23 N -0.145 5.145 24 S 0.508 5.492 25 H 0.074 0.926 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 25.703 -17.319 0.002 30.993 hybrid contribution 0.098 0.929 -0.014 0.934 sum 25.800 -16.390 -0.012 30.566 Atomic orbital electron populations 1.70060 1.08269 1.28066 1.52818 1.25992 0.95570 1.03473 0.94338 0.85712 0.79635 0.78516 0.79133 1.19349 1.21374 1.16774 1.21476 0.92033 0.93162 1.50035 0.94415 1.19451 0.93887 0.94617 0.96992 1.21505 0.91944 0.98232 1.02418 1.21494 0.94118 0.80760 1.02358 1.44332 0.99504 1.10306 1.75905 1.23590 0.90578 0.94355 0.95470 1.65846 0.98442 1.36038 1.29873 1.20284 0.88514 0.87719 0.97969 1.98430 1.37254 1.63564 1.96038 1.21736 0.94346 0.93204 1.28384 1.21868 0.91870 0.87835 0.97703 1.75727 0.96887 1.24028 1.21835 1.78308 1.22243 0.88920 1.09170 1.50944 1.02081 1.10591 1.48243 0.65058 1.78928 0.94658 1.14490 1.26453 1.83802 0.91676 1.01971 1.71754 0.92604 0.95921 0.96035 0.91513 0.91533 0.91505 0.91449 0.72738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 2 C 0.00 0.17 5.47 84.66 0.46 0.63 16 3 Si 0.95 43.36 27.47 68.60 1.88 45.24 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 7 C -0.53 -29.02 9.66 25.60 0.25 -28.78 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.23 16 9 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 10 C -0.10 -3.33 5.27 30.60 0.16 -3.16 16 11 C 0.14 3.71 5.94 86.38 0.51 4.22 16 12 N -0.66 -14.06 5.70 -351.10 -2.00 -16.07 16 13 C 0.33 7.50 8.07 179.34 1.45 8.95 16 14 N -0.57 -15.67 10.11 -192.14 -1.94 -17.61 16 15 C 0.22 5.81 7.35 83.93 0.62 6.43 16 16 Cl 0.02 0.47 27.55 -2.72 -0.07 0.40 16 17 C -0.25 -5.73 6.51 24.03 0.16 -5.57 16 18 C 0.29 6.50 8.10 137.11 1.11 7.61 16 19 N -0.31 -7.10 10.76 -52.54 -0.57 -7.67 16 20 N 0.01 0.18 13.42 37.02 0.50 0.67 16 21 N -0.27 -3.26 8.44 37.02 0.31 -2.95 16 22 H 0.49 1.01 8.96 -340.34 -3.05 -2.05 16 23 N -0.30 -5.51 12.92 -52.51 -0.68 -6.19 16 24 S 0.26 4.61 23.20 -56.49 -1.31 3.30 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.02 0.96 7.20 -2.38 -0.02 0.94 16 27 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.89 8.14 -2.38 -0.02 1.88 16 32 H 0.43 6.81 8.60 -92.71 -0.80 6.02 16 Total: -1.00 -70.55 315.89 -1.44 -71.99 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -2.69 Total: -2.76 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.84 Total: -10.04 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -4.08 Total: -108.13 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.31 Total: 3.30 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -0.07 Total: 0.40 kcal Total: -70.55 -1.44 -71.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676619.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.213 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds