Wall clock time and date at job start Tue Mar 31 2020 10:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99664 * 2 1 4 4 H 1.48502 * 109.46875 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47284 * 299.99441 * 3 2 1 6 6 H 1.48497 * 109.47271 * 59.99770 * 3 2 1 7 7 C 1.37872 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99572 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00517 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47255 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47200 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47199 * 179.97438 * 11 10 9 13 13 C 1.81397 * 102.99895 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47139 * 180.02562 * 13 12 11 15 15 C 1.38314 * 119.92737 * 269.97604 * 14 13 12 16 16 C 1.38396 * 120.32550 * 180.02562 * 15 14 13 17 17 C 1.37920 * 120.18322 * 359.74942 * 16 15 14 18 18 C 1.39641 * 119.86353 * 0.50627 * 17 16 15 19 19 C 1.47646 * 120.16237 * 179.76855 * 18 17 16 20 20 O 1.21477 * 120.00425 * 179.72237 * 19 18 17 21 21 O 1.34728 * 119.99844 * 359.45168 * 19 18 17 22 22 C 1.38095 * 119.93072 * 90.00270 * 14 13 12 23 23 Cl 1.73600 * 120.09795 * 359.95599 * 22 14 13 24 24 H 0.97000 * 120.00259 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46716 * 59.99769 * 9 7 2 26 26 H 1.08994 * 109.46863 * 300.00053 * 9 7 2 27 27 H 1.08992 * 109.47242 * 60.00000 * 10 9 7 28 28 H 1.09000 * 109.46939 * 299.99671 * 10 9 7 29 29 H 1.09000 * 109.46964 * 59.99761 * 11 10 9 30 30 H 1.09006 * 109.46349 * 299.99794 * 11 10 9 31 31 H 1.09001 * 109.47234 * 59.99897 * 13 12 11 32 32 H 1.09002 * 109.47483 * 300.00234 * 13 12 11 33 33 H 1.08000 * 119.84374 * 0.04681 * 15 14 13 34 34 H 1.07995 * 119.90633 * 180.02562 * 16 15 14 35 35 H 1.08003 * 120.06650 * 180.25423 * 17 16 15 36 36 H 0.96694 * 116.99966 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 16 2.6593 -6.3658 -0.0009 13 6 1.5810 -7.8246 -0.0008 14 6 2.4251 -9.0731 -0.0008 15 6 2.8111 -9.6451 -1.1995 16 6 3.5857 -10.7919 -1.2090 17 6 3.9830 -11.3703 -0.0217 18 6 3.5932 -10.8024 1.1930 19 6 4.0105 -11.4190 2.4680 20 8 3.6740 -10.9197 3.5231 21 8 4.7600 -12.5386 2.4613 22 6 2.8109 -9.6439 1.1960 23 17 2.3262 -8.9248 2.6999 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8720 -3.6043 0.8904 28 1 2.8719 -3.6042 -0.8895 29 1 0.8540 -5.0446 -0.8903 30 1 0.8535 -5.0450 0.8898 31 1 0.9515 -7.8111 -0.8905 32 1 0.9521 -7.8116 0.8894 33 1 2.5068 -9.1945 -2.1326 34 1 3.8836 -11.2326 -2.1489 35 1 4.5909 -12.2630 -0.0314 36 1 5.0090 -12.9053 3.3207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065652.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:47 Heat of formation + Delta-G solvation = -86.468481 kcal Electronic energy + Delta-G solvation = -19963.571268 eV Core-core repulsion = 16564.293215 eV Total energy + Delta-G solvation = -3399.278053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 314.053 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79630 -39.29605 -36.72519 -36.29008 -34.46030 -33.45780 -32.02661 -31.48497 -27.84947 -27.23013 -25.20804 -23.45004 -22.32269 -21.55524 -20.23941 -18.29608 -17.80210 -16.64304 -16.46138 -16.15639 -16.05952 -15.75289 -15.01847 -14.62614 -14.59854 -14.35424 -13.98410 -13.54556 -13.13840 -13.05509 -12.51913 -12.28765 -12.14961 -11.89614 -11.77424 -11.70662 -11.65724 -11.45452 -10.92546 -10.89717 -10.53539 -10.21473 -9.96811 -9.80025 -9.41828 -9.31128 -9.12658 -8.96619 -8.37455 -7.46047 -6.02255 -4.04607 0.15916 0.56898 1.82690 1.85946 2.26140 2.57526 2.80904 3.26764 3.30944 3.38420 3.43279 4.08652 4.35219 4.45322 4.47415 4.66932 4.71211 4.99466 5.10602 5.24401 5.33864 5.46211 5.49801 5.57786 5.62677 5.77729 5.87608 6.09830 6.11625 6.18795 6.54755 6.71013 7.01288 7.53020 7.63102 7.74980 7.96849 8.38708 9.02078 9.59733 11.09143 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.027096 B = 0.002400 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.101624 B =11664.869752 C =12119.322999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.074 4.074 12 S -0.258 6.258 13 C -0.060 4.060 14 C -0.070 4.070 15 C -0.053 4.053 16 C -0.130 4.130 17 C -0.050 4.050 18 C -0.126 4.126 19 C 0.521 3.479 20 O -0.488 6.488 21 O -0.514 6.514 22 C 0.031 3.969 23 Cl -0.015 7.015 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 -28.539 -0.804 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.134 4.134 11 C -0.222 4.222 12 S -0.028 6.028 13 C -0.207 4.207 14 C -0.072 4.072 15 C -0.073 4.073 16 C -0.148 4.148 17 C -0.069 4.069 18 C -0.128 4.128 19 C 0.364 3.636 20 O -0.376 6.376 21 O -0.327 6.327 22 C 0.002 3.998 23 Cl 0.015 6.985 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 6.797 -27.984 -0.735 28.807 hybrid contribution -0.820 0.728 0.690 1.296 sum 5.976 -27.256 -0.045 27.904 Atomic orbital electron populations 1.69972 1.06070 1.26566 1.50933 1.25024 0.94869 0.99323 0.95270 0.86517 0.80166 0.83654 0.77584 1.19669 1.20987 1.20984 1.21259 0.93165 0.90838 1.50508 0.92491 1.19106 0.93797 0.90846 0.97405 1.21464 0.99171 0.91096 1.01622 1.23672 0.98897 0.95189 1.04481 1.87097 1.17669 0.99971 1.98085 1.22321 0.99013 0.92788 1.06608 1.19126 1.00276 0.96267 0.91501 1.21372 0.94344 0.94145 0.97483 1.21242 0.98750 0.96222 0.98597 1.21461 0.96157 0.98841 0.90453 1.18753 1.04632 0.97324 0.92056 1.20627 0.75515 0.78276 0.89203 1.91011 1.52157 1.61473 1.32942 1.84516 1.65949 1.41033 1.41169 1.20927 0.96620 0.93176 0.89102 1.98445 1.89132 1.81807 1.29150 0.93021 0.96428 0.96402 0.92337 0.92378 0.90429 0.90411 0.88531 0.88518 0.83923 0.84152 0.83563 0.72533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.70 4.97 -27.89 -0.14 0.56 16 10 C -0.09 -1.96 5.16 -26.73 -0.14 -2.10 16 11 C -0.07 -1.27 5.94 37.16 0.22 -1.05 16 12 S -0.26 -3.92 21.72 -107.50 -2.33 -6.26 16 13 C -0.06 -0.70 5.67 36.01 0.20 -0.49 16 14 C -0.07 -0.75 5.14 -104.64 -0.54 -1.28 16 15 C -0.05 -0.44 9.69 -39.50 -0.38 -0.82 16 16 C -0.13 -0.86 10.03 -39.64 -0.40 -1.26 16 17 C -0.05 -0.37 9.62 -39.17 -0.38 -0.75 16 18 C -0.13 -1.28 5.88 -104.95 -0.62 -1.90 16 19 C 0.52 5.33 8.26 34.57 0.29 5.62 16 20 O -0.49 -6.40 14.76 -19.25 -0.28 -6.69 16 21 O -0.51 -3.38 12.68 -40.57 -0.51 -3.89 16 22 C 0.03 0.37 6.35 -39.05 -0.25 0.12 16 23 Cl -0.02 -0.21 24.36 -51.86 -1.26 -1.47 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 30 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.10 0.94 8.08 -51.92 -0.42 0.52 16 32 H 0.10 1.14 6.90 -51.92 -0.36 0.78 16 33 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.15 0.77 7.61 -52.48 -0.40 0.37 16 36 H 0.42 0.95 9.11 45.56 0.42 1.37 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -33.49 341.65 -9.75 -43.24 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -3.69 Total: -3.75 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -2.54 Total: -16.91 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.17 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.80 Total: -10.58 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -2.33 Total: -6.26 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.26 Total: -1.47 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.49 -9.75 -43.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065652.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.227 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds