Wall clock time and date at job start Tue Mar 31 2020 10:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.38891 * 111.00233 * 275.00079 * 12 2 1 14 14 C 1.39061 * 120.18423 * 299.72278 * 13 12 2 15 15 Cl 1.73598 * 119.97624 * 359.97438 * 14 13 12 16 16 C 1.38033 * 120.04679 * 179.71600 * 14 13 12 17 17 C 1.38633 * 120.42576 * 0.55914 * 16 14 13 18 18 N 1.48019 * 119.81742 * 179.74052 * 17 16 14 19 19 O 1.21803 * 120.00007 * 179.97438 * 18 17 16 20 20 O 1.21806 * 119.99936 * 359.97438 * 18 17 16 21 21 C 1.37707 * 120.36734 * 359.72280 * 17 16 14 22 22 C 1.39829 * 119.94299 * 359.97438 * 21 17 16 23 23 C 1.47294 * 120.20853 * 180.02562 * 22 21 17 24 24 O 1.21526 * 120.00063 * 179.97438 * 23 22 21 25 25 O 1.34773 * 119.99925 * 359.97376 * 23 22 21 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 30 30 H 1.00902 * 111.00328 * 151.04219 * 12 2 1 31 31 H 1.08007 * 119.78574 * 180.27708 * 16 14 13 32 32 H 1.07998 * 120.02608 * 180.02562 * 21 17 16 33 33 H 0.96695 * 116.99768 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 2.0791 0.1727 2.2843 14 6 2.8864 1.3038 2.2332 15 17 3.8238 1.6368 0.8105 16 6 2.9388 2.1648 3.3108 17 6 2.1989 1.9046 4.4539 18 7 2.2696 2.8339 5.6038 19 8 1.6205 2.6088 6.6096 20 8 2.9768 3.8238 5.5442 21 6 1.3982 0.7865 4.5255 22 6 1.3287 -0.0928 3.4404 23 6 0.4737 -1.2901 3.5104 24 8 0.4158 -2.0515 2.5650 25 8 -0.2443 -1.5414 4.6229 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 0.7093 1.1619 -3.4844 30 1 2.9173 -1.1205 1.0286 31 1 3.5638 3.0444 3.2649 32 1 0.8238 0.5894 5.4185 33 1 -0.7903 -2.3394 4.6221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:29 Heat of formation + Delta-G solvation = -52.678327 kcal Electronic energy + Delta-G solvation = -24056.796889 eV Core-core repulsion = 20112.690872 eV Total energy + Delta-G solvation = -3944.106016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.055 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.27494 -40.61931 -39.12320 -36.70575 -36.60766 -36.30215 -35.66013 -33.09073 -31.79948 -30.72186 -28.45848 -25.86292 -25.23147 -24.77813 -22.85292 -21.39779 -20.34276 -19.32646 -18.82267 -17.78364 -17.63376 -17.35318 -16.44950 -16.12479 -16.00541 -15.54516 -15.06906 -14.97158 -14.14264 -13.64658 -13.58830 -13.09150 -12.78663 -12.44862 -11.78910 -11.68783 -11.62102 -11.41173 -11.36179 -11.21340 -11.11741 -11.04784 -10.89587 -10.63904 -10.43559 -10.30861 -10.21471 -9.51589 -9.11909 -9.00623 -8.66813 -7.84888 -6.17243 -4.23743 -0.30320 0.25370 1.12863 1.18006 1.97725 2.36379 2.92447 3.21641 3.23083 3.28843 3.30921 4.09929 4.23929 4.32874 4.41318 4.48527 4.79080 5.15605 5.19110 5.31171 5.39362 5.74672 5.78803 6.25923 6.54244 6.62198 6.89151 6.97501 7.17870 7.55477 7.56204 7.61128 7.89082 8.02777 8.05956 8.29259 8.79104 9.41371 10.89197 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.004917 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.180481 B = 5693.115494 C = 6876.974518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.206 3.794 3 H 0.033 0.967 4 C -0.515 4.515 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.637 5.637 13 C 0.255 3.745 14 C -0.097 4.097 15 Cl 0.001 6.999 16 C -0.015 4.015 17 C -0.069 4.069 18 N 0.037 4.963 19 O -0.159 6.159 20 O -0.161 6.161 21 C 0.007 3.993 22 C -0.110 4.110 23 C 0.519 3.481 24 O -0.440 6.440 25 O -0.524 6.524 26 H -0.004 1.004 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.263 0.737 30 H 0.362 0.638 31 H 0.164 0.836 32 H 0.170 0.830 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.999 0.115 12.792 12.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.553 4.553 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.274 5.274 13 C 0.154 3.846 14 C -0.128 4.128 15 Cl 0.030 6.970 16 C -0.035 4.035 17 C -0.153 4.153 18 N 0.556 4.444 19 O -0.375 6.375 20 O -0.377 6.377 21 C -0.013 4.013 22 C -0.114 4.114 23 C 0.358 3.642 24 O -0.322 6.322 25 O -0.337 6.337 26 H 0.015 0.985 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.192 0.808 31 H 0.181 0.819 32 H 0.188 0.812 33 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 1.612 -0.352 11.754 11.869 hybrid contribution 0.689 -0.055 -0.918 1.149 sum 2.301 -0.406 10.835 11.084 Atomic orbital electron populations 1.21769 0.97364 1.00043 0.99200 1.19658 0.92902 0.93950 0.83230 0.94970 1.21033 1.31989 1.12596 0.89694 0.91959 1.24842 0.94909 0.94906 0.98945 1.69873 1.36217 1.22611 1.23758 0.86502 0.79274 0.79358 0.82329 1.20523 1.21233 1.19859 1.58444 1.32847 1.30714 1.05395 1.19344 0.85332 0.88361 0.91559 1.21907 1.00876 0.98332 0.91732 1.98470 1.69549 1.94569 1.34405 1.20952 0.94860 0.98748 0.88965 1.20620 1.09381 0.95944 0.89333 1.43401 0.98673 1.00688 1.01626 1.94541 1.42624 1.79861 1.20462 1.94547 1.37421 1.17460 1.88236 1.21289 0.92130 0.88812 0.99070 1.18852 1.02200 0.96289 0.94028 1.19977 0.78762 0.85116 0.80340 1.91083 1.60050 1.45535 1.35571 1.84518 1.58135 1.49665 1.41419 0.98498 0.94145 0.89576 0.92714 0.80817 0.81893 0.81213 0.72629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.17 37.16 0.34 -2.65 16 2 C 0.21 4.71 1.87 -68.87 -0.13 4.58 16 3 H 0.03 0.77 4.93 -51.93 -0.26 0.51 16 4 C -0.51 -12.93 8.59 -34.44 -0.30 -13.23 16 5 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -23.80 11.32 55.43 0.63 -23.17 16 8 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.64 -12.34 3.97 -52.81 -0.21 -12.55 16 13 C 0.25 4.22 5.35 -83.56 -0.45 3.77 16 14 C -0.10 -1.49 5.95 -39.35 -0.23 -1.72 16 15 Cl 0.00 0.01 25.61 -51.86 -1.33 -1.32 16 16 C -0.01 -0.19 9.31 -39.51 -0.37 -0.56 16 17 C -0.07 -0.91 6.84 -79.99 -0.55 -1.46 16 18 N 0.04 0.52 4.45 33.94 0.15 0.67 16 19 O -0.16 -2.26 18.42 -29.46 -0.54 -2.80 16 20 O -0.16 -2.34 18.43 -29.46 -0.54 -2.88 16 21 C 0.01 0.09 9.11 -39.18 -0.36 -0.27 16 22 C -0.11 -1.61 5.89 -104.82 -0.62 -2.23 16 23 C 0.52 7.56 8.26 34.41 0.28 7.84 16 24 O -0.44 -7.97 15.81 -19.29 -0.30 -8.27 16 25 O -0.52 -5.46 12.68 -40.69 -0.52 -5.97 16 26 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 29 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.36 6.77 8.21 -39.29 -0.32 6.44 16 31 H 0.16 1.87 7.59 -52.48 -0.40 1.47 16 32 H 0.17 1.83 7.14 -52.49 -0.37 1.45 16 33 H 0.41 2.51 9.11 45.56 0.42 2.92 16 LS Contribution 312.36 15.07 4.71 4.71 Total: -1.00 -28.89 312.36 -7.07 -35.96 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -1.63 Total: 4.64 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -2.46 Total: -4.30 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.57 Total: -35.05 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.91 Total: -19.93 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.33 Total: -1.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.89 -7.07 -35.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.717 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds