Wall clock time and date at job start Tue Mar 31 2020 10:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46754 * 90.00468 * 8 6 4 10 10 H 1.48498 * 109.47278 * 210.00299 * 8 6 4 11 11 H 1.48498 * 109.47109 * 330.00728 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.38891 * 111.00233 * 275.00079 * 12 2 1 14 14 C 1.39061 * 120.18423 * 299.72278 * 13 12 2 15 15 Cl 1.73598 * 119.97624 * 359.97438 * 14 13 12 16 16 C 1.38033 * 120.04679 * 179.71600 * 14 13 12 17 17 C 1.38633 * 120.42576 * 0.55914 * 16 14 13 18 18 N 1.48019 * 119.81742 * 179.74052 * 17 16 14 19 19 O 1.21803 * 120.00007 * 179.97438 * 18 17 16 20 20 O 1.21806 * 119.99936 * 359.97438 * 18 17 16 21 21 C 1.37707 * 120.36734 * 359.72280 * 17 16 14 22 22 C 1.39829 * 119.94299 * 359.97438 * 21 17 16 23 23 C 1.47294 * 120.20853 * 180.02562 * 22 21 17 24 24 O 1.21526 * 120.00063 * 179.97438 * 23 22 21 25 25 O 1.34773 * 119.99925 * 359.97376 * 23 22 21 26 26 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 29 29 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 30 30 H 1.00902 * 111.00328 * 151.04219 * 12 2 1 31 31 H 1.08007 * 119.78574 * 180.27708 * 16 14 13 32 32 H 1.07998 * 120.02608 * 180.02562 * 21 17 16 33 33 H 0.96695 * 116.99768 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 7 2.0197 -0.6925 1.1993 13 6 2.0791 0.1727 2.2843 14 6 2.8864 1.3038 2.2332 15 17 3.8238 1.6368 0.8105 16 6 2.9388 2.1648 3.3108 17 6 2.1989 1.9046 4.4539 18 7 2.2696 2.8339 5.6038 19 8 1.6205 2.6088 6.6096 20 8 2.9768 3.8238 5.5442 21 6 1.3982 0.7865 4.5255 22 6 1.3287 -0.0928 3.4404 23 6 0.4737 -1.2901 3.5104 24 8 0.4158 -2.0515 2.5650 25 8 -0.2443 -1.5414 4.6229 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 0.7093 1.1619 -3.4844 30 1 2.9173 -1.1205 1.0286 31 1 3.5638 3.0444 3.2649 32 1 0.8238 0.5894 5.4185 33 1 -0.7903 -2.3394 4.6221 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:28 Heat of formation + Delta-G solvation = -69.741106 kcal Electronic energy + Delta-G solvation = -24057.536786 eV Core-core repulsion = 20112.690872 eV Total energy + Delta-G solvation = -3944.845914 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.055 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.39048 -41.79133 -40.26457 -37.98242 -37.76270 -37.61595 -36.83530 -34.82860 -32.97089 -32.18950 -30.03953 -27.42544 -26.79047 -25.97263 -24.08201 -22.54855 -22.02244 -20.41603 -19.93931 -19.03370 -18.85074 -18.71417 -17.63615 -17.51891 -17.24502 -16.95233 -16.52473 -16.21797 -15.71176 -15.10352 -14.81093 -14.47473 -14.14801 -13.64119 -13.45475 -13.10332 -12.91585 -12.80420 -12.72737 -12.59919 -12.53412 -12.44844 -12.33402 -12.32633 -12.12281 -11.97349 -11.61323 -10.91649 -10.69957 -10.59472 -10.30055 -9.41998 -8.13283 -6.23988 -1.45714 -0.85084 -0.04114 0.04751 0.78435 1.23618 1.41630 1.44478 1.52089 1.89891 2.09390 2.40667 2.86062 3.17994 3.19891 3.32067 3.34006 3.61753 4.00386 4.22179 4.30079 4.61573 4.67166 4.79339 5.01973 5.10384 5.15628 5.38770 5.64669 5.65163 5.77483 6.12783 6.19504 6.42560 6.57657 6.86573 7.06119 7.43632 8.92521 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.016902 B = 0.004917 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.180481 B = 5693.115494 C = 6876.974518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H 0.027 0.973 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.023 3.977 7 N -0.913 5.913 8 Si 0.952 3.048 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.267 1.267 12 N -0.638 5.638 13 C 0.231 3.769 14 C -0.102 4.102 15 Cl -0.014 7.014 16 C -0.001 4.001 17 C -0.065 4.065 18 N 0.037 4.963 19 O -0.151 6.151 20 O -0.171 6.171 21 C 0.028 3.972 22 C -0.113 4.113 23 C 0.527 3.473 24 O -0.483 6.483 25 O -0.506 6.506 26 H 0.007 0.993 27 H 0.024 0.976 28 H 0.061 0.939 29 H 0.262 0.738 30 H 0.362 0.638 31 H 0.182 0.818 32 H 0.195 0.805 33 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.097 0.154 14.463 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 H 0.044 0.956 4 C -0.560 4.560 5 H 0.077 0.923 6 C -0.177 4.177 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.192 1.192 12 N -0.274 5.274 13 C 0.131 3.869 14 C -0.132 4.132 15 Cl 0.015 6.985 16 C -0.021 4.021 17 C -0.149 4.149 18 N 0.556 4.444 19 O -0.370 6.370 20 O -0.384 6.384 21 C 0.008 3.992 22 C -0.117 4.117 23 C 0.368 3.632 24 O -0.369 6.369 25 O -0.321 6.321 26 H 0.026 0.974 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.190 0.810 31 H 0.199 0.801 32 H 0.213 0.787 33 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 1.718 -0.306 13.464 13.576 hybrid contribution 0.617 -0.058 -1.234 1.381 sum 2.335 -0.364 12.229 12.456 Atomic orbital electron populations 1.21575 0.98326 0.98668 0.98448 1.19373 0.92037 0.93640 0.84148 0.95596 1.21314 1.31477 1.12382 0.90826 0.92323 1.25498 0.95238 0.95548 1.01388 1.69980 1.37338 1.23792 1.24072 0.85653 0.78876 0.78252 0.79424 1.20720 1.21164 1.19175 1.58169 1.33089 1.31228 1.04904 1.19401 0.87038 0.88805 0.91615 1.21767 1.01084 0.98552 0.91839 1.98464 1.69891 1.94624 1.35490 1.21051 0.94344 0.98597 0.88109 1.20647 1.09230 0.95911 0.89081 1.43433 0.98617 1.00673 1.01657 1.94541 1.42281 1.79693 1.20456 1.94563 1.37781 1.17720 1.88357 1.21437 0.91209 0.87582 0.98965 1.18866 1.02023 0.96918 0.93882 1.19946 0.78409 0.84425 0.80454 1.91078 1.61624 1.46914 1.37296 1.84463 1.57630 1.50896 1.39119 0.97400 0.95671 0.91995 0.92898 0.80963 0.80091 0.78750 0.70140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.40 9.17 71.98 0.66 -4.74 16 2 C 0.21 9.81 1.87 44.17 0.08 9.89 16 3 H 0.03 1.26 4.93 -2.39 -0.01 1.24 16 4 C -0.52 -26.46 8.59 25.60 0.22 -26.24 16 5 H 0.06 2.95 7.62 -2.91 -0.02 2.93 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -49.65 11.32 21.45 0.24 -49.41 16 8 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 N -0.64 -24.76 3.97 -320.99 -1.27 -26.04 16 13 C 0.23 7.47 5.35 38.74 0.21 7.68 16 14 C -0.10 -2.99 5.95 22.42 0.13 -2.86 16 15 Cl -0.01 -0.46 25.61 -2.72 -0.07 -0.53 16 16 C 0.00 -0.02 9.31 22.32 0.21 0.19 16 17 C -0.07 -1.54 6.84 36.34 0.25 -1.29 16 18 N 0.04 0.93 4.45 -46.54 -0.21 0.72 16 19 O -0.15 -3.81 18.42 18.88 0.35 -3.46 16 20 O -0.17 -4.54 18.43 18.88 0.35 -4.20 16 21 C 0.03 0.61 9.11 22.53 0.21 0.82 16 22 C -0.11 -3.10 5.89 -19.99 -0.12 -3.22 16 23 C 0.53 14.43 8.26 70.20 0.58 15.01 16 24 O -0.48 -17.23 15.81 19.75 0.31 -16.92 16 25 O -0.51 -9.01 12.68 -56.84 -0.72 -9.73 16 26 H 0.01 0.32 8.03 -2.39 -0.02 0.30 16 27 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 3.29 6.07 -2.38 -0.01 3.27 16 29 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.36 13.67 8.21 -89.69 -0.74 12.94 16 31 H 0.18 3.73 7.59 -2.91 -0.02 3.71 16 32 H 0.20 3.36 7.14 -2.91 -0.02 3.34 16 33 H 0.44 3.97 9.11 -74.06 -0.67 3.30 16 Total: -1.00 -61.38 312.36 3.69 -57.69 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.19 Total: 11.12 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 2.88 Total: -3.11 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -1.24 Total: -74.72 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: 0.29 Total: -34.31 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.07 Total: -0.53 kcal Total: -61.38 3.69 -57.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.051 kcal (2) G-P(sol) polarization free energy of solvation -61.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds