Wall clock time and date at job start Tue Mar 31 2020 10:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99930 * 2 1 4 4 H 1.48501 * 109.46995 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47140 * 300.00358 * 3 2 1 6 6 H 1.48500 * 109.47116 * 60.00318 * 3 2 1 7 7 C 1.38811 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99999 * 134.71375 * 7 2 1 9 9 N 1.36930 * 120.00065 * 314.71635 * 7 2 1 10 10 C 1.46504 * 120.00313 * 211.08751 * 9 7 2 11 11 C 1.50704 * 109.47346 * 269.72804 * 10 9 7 12 12 O 1.20822 * 119.99434 * 359.97438 * 11 10 9 13 13 O 1.34227 * 120.00206 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00284 * 30.81136 * 9 7 2 15 15 C 1.50703 * 109.47339 * 83.98069 * 14 9 7 16 16 C 1.38237 * 120.00811 * 269.00325 * 15 14 9 17 17 C 1.38221 * 120.01496 * 179.76571 * 16 15 14 18 18 C 1.38266 * 120.02243 * 0.50637 * 17 16 15 19 19 N 1.48018 * 119.99027 * 179.72633 * 18 17 16 20 20 O 1.21805 * 119.99923 * 180.02562 * 19 18 17 21 21 O 1.21794 * 120.00310 * 0.02562 * 19 18 17 22 22 C 1.38189 * 120.01655 * 359.74267 * 18 17 16 23 23 C 1.38331 * 120.00810 * 89.26991 * 15 14 9 24 24 Cl 1.73604 * 120.01150 * 0.02562 * 23 15 14 25 25 H 0.97004 * 119.99999 * 353.94605 * 1 2 3 26 26 H 1.09005 * 109.47057 * 29.72215 * 10 9 7 27 27 H 1.08999 * 109.47460 * 149.72304 * 10 9 7 28 28 H 0.96695 * 117.00076 * 179.97438 * 13 11 10 29 29 H 1.08999 * 109.47791 * 203.98084 * 14 9 7 30 30 H 1.08997 * 109.47100 * 323.98594 * 14 9 7 31 31 H 1.08001 * 119.99202 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.98682 * 180.25162 * 17 16 15 33 33 H 1.07995 * 120.00697 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 2.8501 -1.3405 -0.6653 9 7 1.6300 -2.2126 0.8417 10 6 2.6312 -3.1443 1.3670 11 6 2.7621 -4.3200 0.4333 12 8 2.0879 -4.3743 -0.5678 13 8 3.6277 -5.3068 0.7140 14 6 0.2229 -2.3585 1.2223 15 6 -0.5075 -3.1364 0.1580 16 6 -1.1197 -2.4706 -0.8874 17 6 -1.7855 -3.1841 -1.8662 18 6 -1.8484 -4.5635 -1.7947 19 7 -2.5667 -5.3265 -2.8401 20 8 -2.6227 -6.5417 -2.7771 21 8 -3.1018 -4.7394 -3.7633 22 6 -1.2412 -5.2299 -0.7475 23 6 -0.5701 -4.5164 0.2299 24 17 0.1921 -5.3527 1.5465 25 1 -0.4850 0.8354 0.0886 26 1 3.5923 -2.6366 1.4488 27 1 2.3204 -3.4947 2.3512 28 1 3.6761 -6.0402 0.0857 29 1 0.1564 -2.8907 2.1713 30 1 -0.2295 -1.3723 1.3264 31 1 -1.0750 -1.3928 -0.9411 32 1 -2.2602 -2.6638 -2.6849 33 1 -1.2901 -6.3073 -0.6920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184235.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:09 Heat of formation + Delta-G solvation = -37.922082 kcal Electronic energy + Delta-G solvation = -24639.440728 eV Core-core repulsion = 20695.974591 eV Total energy + Delta-G solvation = -3943.466138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.055 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.75517 -39.59129 -38.92674 -36.26526 -36.18561 -36.14946 -35.18548 -32.17038 -31.76783 -30.52113 -28.04489 -27.00431 -24.83702 -22.86782 -22.57780 -21.19116 -20.29979 -18.89517 -18.31427 -17.45209 -17.41883 -17.14464 -15.96589 -15.61241 -15.35286 -15.06721 -14.78540 -14.71105 -13.84037 -13.74848 -13.36111 -12.98797 -12.67874 -12.14548 -11.97794 -11.50980 -11.42885 -11.34282 -11.24121 -11.13743 -10.93734 -10.80852 -10.79924 -10.66942 -10.48864 -10.34730 -10.15355 -9.91434 -8.74466 -8.58272 -8.38529 -7.56398 -6.62470 -3.63275 0.31745 1.45402 1.77392 1.89260 2.44747 2.97687 3.12627 3.29352 3.31387 3.66684 3.83563 4.17371 4.57025 4.96306 5.09687 5.13473 5.27081 5.48112 5.64721 5.80975 5.95844 6.01063 6.05677 6.19077 6.21997 6.50192 6.80349 6.91337 7.09727 7.18273 7.23467 7.53201 7.81647 8.06493 8.55311 8.63995 9.20962 9.73322 10.45650 Molecular weight = 314.05amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.006478 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.944973 B = 4321.359002 C = 5738.440665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.052 3.948 3 Si 0.870 3.130 4 H -0.273 1.273 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.280 4.280 8 H 0.082 0.918 9 N -0.549 5.549 10 C 0.161 3.839 11 C 0.431 3.569 12 O -0.501 6.501 13 O -0.535 6.535 14 C 0.145 3.855 15 C -0.001 4.001 16 C -0.079 4.079 17 C -0.068 4.068 18 C -0.059 4.059 19 N 0.042 4.958 20 O -0.185 6.185 21 O -0.177 6.177 22 C -0.061 4.061 23 C -0.027 4.027 24 Cl -0.069 7.069 25 H 0.268 0.732 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.389 0.611 29 H 0.046 0.954 30 H 0.132 0.868 31 H 0.198 0.802 32 H 0.143 0.857 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -4.990 4.703 6.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.149 4.149 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.406 4.406 8 H 0.099 0.901 9 N -0.266 5.266 10 C 0.031 3.969 11 C 0.270 3.730 12 O -0.386 6.386 13 O -0.346 6.346 14 C 0.021 3.979 15 C -0.006 4.006 16 C -0.098 4.098 17 C -0.088 4.088 18 C -0.144 4.144 19 N 0.556 4.444 20 O -0.397 6.397 21 O -0.390 6.390 22 C -0.081 4.081 23 C -0.055 4.055 24 Cl -0.040 7.040 25 H 0.079 0.921 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.246 0.754 29 H 0.064 0.936 30 H 0.149 0.851 31 H 0.214 0.786 32 H 0.161 0.839 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.594 -4.232 5.243 6.764 hybrid contribution 0.323 -0.443 -1.050 1.184 sum 0.917 -4.675 4.193 6.346 Atomic orbital electron populations 1.69731 1.06486 1.28022 1.45200 1.25053 0.94595 0.98325 0.96941 0.86812 0.81624 0.84331 0.77736 1.19733 1.21643 1.20693 1.19193 1.13722 0.88781 1.18883 0.90072 1.44537 1.00108 1.28490 1.53460 1.20604 0.96264 0.86377 0.93698 1.26374 0.75543 0.83563 0.87549 1.90680 1.42894 1.77322 1.27744 1.84646 1.61163 1.33490 1.55305 1.21578 0.84105 1.01516 0.90701 1.21322 0.89409 0.90736 0.99094 1.22335 0.92384 1.04760 0.90352 1.21261 0.97452 0.90263 0.99776 1.20763 1.08040 0.92221 0.93379 1.43633 0.98592 1.01036 1.01138 1.94473 1.65826 0.96449 1.82943 1.94480 1.46655 1.71665 1.26230 1.20420 0.95526 1.00862 0.91279 1.20493 1.00647 0.92544 0.91852 1.98316 1.80622 1.78085 1.47013 0.92073 0.88207 0.89612 0.75392 0.93575 0.85129 0.78615 0.83876 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -18.64 7.69 55.49 0.43 -18.22 16 2 C 0.05 1.16 5.14 -17.43 -0.09 1.07 16 3 Si 0.87 17.76 29.70 -169.99 -5.05 12.71 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.28 -6.35 9.38 -15.06 -0.14 -6.49 16 8 H 0.08 1.96 8.06 -52.49 -0.42 1.53 16 9 N -0.55 -11.14 2.05 -175.98 -0.36 -11.50 16 10 C 0.16 2.77 5.83 -5.19 -0.03 2.74 16 11 C 0.43 7.64 6.31 36.01 0.23 7.87 16 12 O -0.50 -10.63 14.17 -18.75 -0.27 -10.89 16 13 O -0.54 -7.74 13.42 -39.25 -0.53 -8.27 16 14 C 0.15 2.82 5.00 -5.19 -0.03 2.79 16 15 C 0.00 -0.01 4.71 -104.59 -0.49 -0.50 16 16 C -0.08 -1.56 9.49 -39.59 -0.38 -1.93 16 17 C -0.07 -1.26 9.55 -39.58 -0.38 -1.64 16 18 C -0.06 -1.13 6.85 -79.95 -0.55 -1.68 16 19 N 0.04 0.82 4.45 33.96 0.15 0.97 16 20 O -0.19 -3.60 18.45 -29.46 -0.54 -4.14 16 21 O -0.18 -3.44 18.45 -29.46 -0.54 -3.98 16 22 C -0.06 -1.11 9.34 -39.55 -0.37 -1.48 16 23 C -0.03 -0.50 4.63 -39.50 -0.18 -0.68 16 24 Cl -0.07 -1.11 24.20 -51.86 -1.26 -2.36 16 25 H 0.27 5.61 8.32 -40.82 -0.34 5.27 16 26 H 0.10 1.59 8.04 -51.93 -0.42 1.17 16 27 H 0.09 1.29 7.81 -51.93 -0.41 0.88 16 28 H 0.39 4.33 9.10 45.56 0.41 4.75 16 29 H 0.05 0.81 6.62 -51.93 -0.34 0.46 16 30 H 0.13 2.73 5.15 -51.93 -0.27 2.46 16 31 H 0.20 4.07 5.02 -52.49 -0.26 3.80 16 32 H 0.14 2.41 7.61 -52.49 -0.40 2.01 16 33 H 0.14 2.42 7.61 -52.49 -0.40 2.02 16 LS Contribution 303.48 15.07 4.57 4.57 Total: -1.00 -25.65 303.48 -7.44 -33.09 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -1.64 Total: 7.96 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.41 Total: 0.06 kcal Atomic # 7 Polarization: -28.96 SS G_CDS: 0.22 Total: -28.74 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.88 Total: -27.29 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.05 Total: 12.71 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.26 Total: -2.36 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -25.65 -7.44 -33.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184235.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.830 kcal (2) G-P(sol) polarization free energy of solvation -25.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds