Wall clock time and date at job start Tue Mar 31 2020 10:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47054 * 2 1 4 4 H 1.08998 * 109.47330 * 305.68925 * 3 2 1 5 5 C 1.50705 * 109.47022 * 185.69080 * 3 2 1 6 6 H 1.08009 * 119.99750 * 275.00494 * 5 3 2 7 7 C 1.37867 * 120.00130 * 95.00456 * 5 3 2 8 8 N 1.31522 * 120.00105 * 184.82944 * 7 5 3 9 9 Si 1.86798 * 120.00251 * 4.83124 * 7 5 3 10 10 H 1.48501 * 109.47321 * 84.85809 * 9 7 5 11 11 H 1.48498 * 109.47631 * 204.86123 * 9 7 5 12 12 H 1.48503 * 109.47133 * 324.86295 * 9 7 5 13 13 N 1.46502 * 109.47150 * 65.69439 * 3 2 1 14 14 C 1.38076 * 119.99330 * 274.99687 * 13 3 2 15 15 N 1.28831 * 124.81944 * 359.69481 * 14 13 3 16 16 C 1.34929 * 117.87013 * 179.84033 * 15 14 13 17 17 C 1.39720 * 112.87374 * 0.43972 * 16 15 14 18 18 C 1.39309 * 120.42695 * 179.75839 * 17 16 15 19 19 C 1.37825 * 120.23635 * 359.97438 * 18 17 16 20 20 Cl 1.73593 * 120.02021 * 180.02562 * 19 18 17 21 21 C 1.38785 * 119.96214 * 0.02562 * 19 18 17 22 22 C 1.37422 * 120.55320 * 359.97119 * 21 19 18 23 23 F 1.35095 * 119.79117 * 180.02562 * 22 21 19 24 24 S 1.75810 * 124.81211 * 180.02562 * 14 13 3 25 25 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47281 * 300.00120 * 1 2 3 27 27 H 1.09001 * 109.46818 * 59.99751 * 1 2 3 28 28 H 1.09001 * 109.46887 * 239.99972 * 2 1 3 29 29 H 1.09001 * 109.46818 * 120.00249 * 2 1 3 30 30 H 0.96996 * 119.99636 * 180.02562 * 8 7 5 31 31 H 0.96994 * 120.00307 * 95.00040 * 13 3 2 32 32 H 1.08007 * 119.88276 * 180.02562 * 18 17 16 33 33 H 1.07999 * 119.71747 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1409 6 1 4.1651 1.3332 0.7332 7 6 4.1157 1.5892 -1.3854 8 7 5.4206 1.4963 -1.5215 9 14 3.0421 1.9170 -2.8784 10 1 2.7756 3.3740 -2.9863 11 1 3.7404 1.4496 -4.1028 12 1 1.7563 1.1882 -2.7332 13 7 1.6668 2.0924 1.2588 14 6 0.4211 2.6726 1.3932 15 7 -0.4801 2.7015 0.4730 16 6 -1.6530 3.3048 0.7575 17 6 -1.6946 3.8279 2.0524 18 6 -2.8319 4.4896 2.5099 19 6 -3.9283 4.6349 1.6874 20 17 -5.3424 5.4610 2.2629 21 6 -3.9011 4.1203 0.3987 22 6 -2.7872 3.4648 -0.0684 23 9 -2.7773 2.9704 -1.3256 24 16 -0.1571 3.4842 2.8416 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 5.8253 1.5983 -2.3971 31 1 2.2947 2.1151 1.9977 32 1 -2.8544 4.8910 3.5123 33 1 -4.7626 4.2360 -0.2423 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651719248.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:17 Heat of formation + Delta-G solvation = -12.828495 kcal Electronic energy + Delta-G solvation = -21187.621794 eV Core-core repulsion = 17700.369457 eV Total energy + Delta-G solvation = -3487.252337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 314.035 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.95269 -41.25543 -39.22621 -37.79602 -36.58499 -34.54841 -33.23891 -31.80600 -30.38389 -29.07668 -25.57862 -24.75576 -23.84233 -22.89553 -21.28123 -20.25288 -19.28164 -18.36955 -17.98658 -17.27621 -17.11127 -16.92292 -16.32711 -16.13852 -15.93057 -15.67450 -14.84891 -14.80525 -14.56620 -13.95762 -13.86512 -13.79746 -13.75072 -13.39548 -12.95392 -12.75526 -12.44268 -12.36373 -12.14930 -12.02712 -11.89413 -11.67367 -11.26797 -11.02662 -10.89549 -10.58552 -10.46911 -9.19231 -8.61074 -8.43512 -6.50044 -0.62482 -0.21017 -0.15497 0.43345 1.01228 1.26095 1.29100 1.32888 1.42675 2.17910 2.23833 2.34821 2.91900 3.04833 3.26290 3.80980 3.87820 4.10006 4.29087 4.38071 4.39035 4.49931 4.56300 4.74631 4.80199 4.88049 5.09176 5.21067 5.22349 5.33846 5.42114 5.53792 5.81374 6.09214 6.34884 6.56705 6.96768 7.19055 8.71190 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.004058 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.404909 B = 6898.470017 C = 7472.498840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.122 4.122 3 C 0.255 3.745 4 H 0.039 0.961 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.040 3.960 8 N -0.926 5.926 9 Si 0.922 3.078 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.252 1.252 13 N -0.655 5.655 14 C 0.383 3.617 15 N -0.580 5.580 16 C 0.098 3.902 17 C -0.186 4.186 18 C -0.041 4.041 19 C -0.026 4.026 20 Cl -0.035 7.035 21 C -0.108 4.108 22 C 0.109 3.891 23 F -0.137 7.137 24 S 0.093 5.907 25 H 0.053 0.947 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.272 0.728 31 H 0.419 0.581 32 H 0.169 0.831 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.682 6.141 9.400 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.150 3.850 4 H 0.057 0.943 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.162 4.162 8 N -0.564 5.564 9 Si 0.746 3.254 10 H -0.202 1.202 11 H -0.204 1.204 12 H -0.176 1.176 13 N -0.289 5.289 14 C 0.006 3.994 15 N -0.309 5.309 16 C -0.026 4.026 17 C -0.307 4.307 18 C -0.064 4.064 19 C -0.057 4.057 20 Cl -0.006 7.006 21 C -0.130 4.130 22 C 0.086 3.914 23 F -0.116 7.116 24 S 0.344 5.656 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.258 0.742 32 H 0.186 0.814 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.901 6.023 9.615 22.045 hybrid contribution -0.208 0.057 -1.549 1.564 sum -19.110 6.080 8.067 21.616 Atomic orbital electron populations 1.21732 0.95752 1.00083 1.01136 1.21998 0.94998 0.97730 1.01401 1.19067 0.93289 0.90271 0.82421 0.94326 1.21173 0.90124 1.50733 0.94702 0.92339 1.25528 0.95650 0.93733 1.01243 1.69966 1.11226 1.49782 1.25405 0.86127 0.80163 0.79252 0.79812 1.20219 1.20410 1.17558 1.44980 1.09573 1.56142 1.18241 1.24236 0.90718 0.92897 0.91516 1.66447 1.02297 1.29874 1.32270 1.19084 0.92107 0.98463 0.92917 1.23164 1.00569 1.09839 0.97140 1.20332 0.88386 0.96692 1.01037 1.20089 0.90314 1.01596 0.93714 1.98387 1.37412 1.76458 1.88385 1.20808 0.97665 0.98325 0.96250 1.17087 0.93310 1.01273 0.79751 1.91488 1.96749 1.85767 1.37554 1.84658 1.06756 1.59448 1.14767 0.92830 0.93521 0.94373 0.92830 0.91960 0.91904 0.74182 0.81374 0.80747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.55 71.98 0.62 -4.17 16 2 C -0.12 -4.93 5.59 30.59 0.17 -4.76 16 3 C 0.25 11.30 1.93 44.24 0.09 11.38 16 4 H 0.04 1.88 4.90 -2.39 -0.01 1.87 16 5 C -0.53 -27.46 9.05 25.60 0.23 -27.23 16 6 H 0.06 3.24 8.06 -2.91 -0.02 3.21 16 7 C 0.04 2.18 5.47 84.65 0.46 2.65 16 8 N -0.93 -54.02 13.96 21.44 0.30 -53.72 16 9 Si 0.92 43.69 26.99 68.60 1.85 45.54 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.25 -11.62 6.82 99.48 0.68 -10.94 16 13 N -0.65 -24.40 5.15 -330.94 -1.70 -26.10 16 14 C 0.38 13.27 6.75 179.74 1.21 14.49 16 15 N -0.58 -21.90 7.51 -189.08 -1.42 -23.32 16 16 C 0.10 3.17 6.92 39.76 0.28 3.44 16 17 C -0.19 -4.90 6.52 22.89 0.15 -4.75 16 18 C -0.04 -0.81 9.84 22.43 0.22 -0.59 16 19 C -0.03 -0.50 6.32 22.30 0.14 -0.36 16 20 Cl -0.04 -0.54 28.96 -2.72 -0.08 -0.62 16 21 C -0.11 -2.31 9.75 22.21 0.22 -2.09 16 22 C 0.11 3.19 7.35 22.81 0.17 3.36 16 23 F -0.14 -4.52 17.26 44.97 0.78 -3.75 16 24 S 0.09 2.40 23.39 -56.49 -1.32 1.08 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 1.70 5.58 -2.39 -0.01 1.69 16 27 H 0.04 1.52 7.91 -2.39 -0.02 1.50 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.42 13.93 8.72 -92.71 -0.81 13.12 16 32 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -60.80 312.30 2.69 -58.10 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.34 Total: 11.42 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 3.95 Total: -8.64 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -2.83 Total: -103.14 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.78 Total: -3.75 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.85 Total: 45.54 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -1.32 Total: 1.08 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -60.80 2.69 -58.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651719248.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.272 kcal (2) G-P(sol) polarization free energy of solvation -60.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds