Wall clock time and date at job start Tue Mar 31 2020 10:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47158 * 89.99755 * 9 7 5 11 11 H 1.48494 * 109.47116 * 210.00006 * 9 7 5 12 12 H 1.48500 * 109.46922 * 330.00127 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.38078 * 119.99849 * 85.00667 * 13 3 2 15 15 N 1.28829 * 124.81698 * 180.02562 * 14 13 3 16 16 C 1.34930 * 117.86875 * 179.97438 * 15 14 13 17 17 C 1.39723 * 112.87283 * 359.97438 * 16 15 14 18 18 C 1.39315 * 120.42318 * 180.02562 * 17 16 15 19 19 C 1.37824 * 120.23514 * 0.02562 * 18 17 16 20 20 Cl 1.73600 * 120.01664 * 180.02562 * 19 18 17 21 21 C 1.38781 * 119.96788 * 359.97438 * 19 18 17 22 22 C 1.37430 * 120.55122 * 359.97284 * 21 19 18 23 23 F 1.35100 * 119.78842 * 180.02562 * 22 21 19 24 24 S 1.75803 * 124.81270 * 359.68858 * 14 13 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 32 32 H 1.08003 * 119.87895 * 180.02562 * 18 17 16 33 33 H 1.07995 * 119.72506 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4417 2.1143 2.0850 11 1 6.4395 -0.3097 2.1551 12 1 6.6135 0.8416 0.0279 13 7 1.6525 2.0974 -1.2519 14 6 0.4054 2.6783 -1.3699 15 7 -0.0307 3.2763 -2.4244 16 6 -1.2758 3.7947 -2.3860 17 6 -1.9124 3.5884 -1.1594 18 6 -3.2063 4.0596 -0.9481 19 6 -3.8714 4.7343 -1.9492 20 17 -5.4833 5.3195 -1.6795 21 6 -3.2514 4.9464 -3.1725 22 6 -1.9750 4.4893 -3.3974 23 9 -1.3859 4.7048 -4.5940 24 16 -0.8157 2.6992 -0.1054 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0610 2.9499 31 1 2.2720 2.1231 -1.9978 32 1 -3.6899 3.8956 0.0035 33 1 -3.7759 5.4759 -3.9541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651719249.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:19 Heat of formation + Delta-G solvation = -14.346446 kcal Electronic energy + Delta-G solvation = -20868.220344 eV Core-core repulsion = 17380.902183 eV Total energy + Delta-G solvation = -3487.318161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 314.035 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.94303 -41.14096 -39.14907 -37.90619 -36.75086 -34.53417 -32.82902 -31.77476 -30.32397 -28.65812 -25.61957 -24.99287 -23.72358 -22.73109 -22.01816 -19.77779 -19.26136 -18.16275 -17.83936 -17.26084 -16.99788 -16.90539 -16.31897 -16.13317 -15.90637 -15.63687 -14.74886 -14.68032 -14.54059 -13.98626 -13.87194 -13.66841 -13.41776 -13.23397 -12.93236 -12.76556 -12.63418 -12.29394 -12.14325 -12.07046 -11.92007 -11.59709 -11.18940 -10.88374 -10.72011 -10.66144 -10.41515 -9.06698 -8.60521 -8.24632 -6.40447 -0.60071 -0.18282 -0.04708 0.56241 1.03184 1.25635 1.43209 1.45860 1.54255 2.01540 2.34830 2.41233 3.03683 3.06467 3.31142 3.83048 3.90405 4.17725 4.39683 4.42719 4.44848 4.57289 4.57822 4.78927 4.87157 4.92065 5.15579 5.23260 5.38139 5.40857 5.54289 5.68895 5.84436 6.06055 6.50147 6.61558 6.86357 7.30657 8.80151 Molecular weight = 314.04amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.003390 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.212909 B = 8256.662335 C = 8823.745392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.277 3.723 4 H 0.028 0.972 5 C -0.555 4.555 6 H 0.065 0.935 7 C 0.030 3.970 8 N -0.903 5.903 9 Si 0.964 3.036 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.269 1.269 13 N -0.657 5.657 14 C 0.384 3.616 15 N -0.594 5.594 16 C 0.094 3.906 17 C -0.204 4.204 18 C -0.044 4.044 19 C -0.026 4.026 20 Cl -0.036 7.036 21 C -0.108 4.108 22 C 0.112 3.888 23 F -0.134 7.134 24 S 0.105 5.895 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.270 0.730 31 H 0.409 0.591 32 H 0.164 0.836 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.490 5.941 -4.756 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.174 3.826 4 H 0.045 0.955 5 C -0.593 4.593 6 H 0.083 0.917 7 C -0.172 4.172 8 N -0.540 5.540 9 Si 0.789 3.211 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.194 1.194 13 N -0.291 5.291 14 C 0.007 3.993 15 N -0.323 5.323 16 C -0.029 4.029 17 C -0.324 4.324 18 C -0.068 4.068 19 C -0.057 4.057 20 Cl -0.007 7.007 21 C -0.130 4.130 22 C 0.089 3.911 23 F -0.113 7.113 24 S 0.354 5.646 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.247 0.753 32 H 0.182 0.818 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.098 5.377 -3.786 15.556 hybrid contribution 1.196 0.359 -0.997 1.598 sum -12.902 5.735 -4.783 14.908 Atomic orbital electron populations 1.22099 0.96479 1.01486 1.00591 1.21949 0.94239 0.98470 1.02243 1.18928 0.94996 0.89663 0.78969 0.95487 1.21381 0.90975 1.39902 1.07020 0.91706 1.25540 1.02775 0.94001 0.94880 1.69938 1.36890 1.37545 1.09660 0.85462 0.79643 0.77674 0.78317 1.20319 1.20566 1.19398 1.45001 1.09764 1.55627 1.18671 1.24111 0.92154 0.92110 0.90936 1.66353 1.15081 1.23822 1.27087 1.19042 0.89580 1.00219 0.94082 1.23557 1.01265 1.09619 0.97974 1.20330 0.90376 0.95820 1.00228 1.20102 0.88793 1.02389 0.94406 1.98382 1.18996 1.86896 1.96377 1.20801 0.91973 1.01693 0.98566 1.17008 0.91911 1.01949 0.80257 1.91479 1.84223 1.92916 1.42651 1.85481 1.07003 1.55772 1.16297 0.91825 0.93993 0.92549 0.89512 0.94206 0.92095 0.75273 0.81838 0.80386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 8.14 71.98 0.59 -4.74 16 2 C -0.13 -5.53 5.45 30.60 0.17 -5.36 16 3 C 0.28 12.43 2.23 44.25 0.10 12.53 16 4 H 0.03 1.33 7.26 -2.39 -0.02 1.32 16 5 C -0.55 -27.27 8.73 25.60 0.22 -27.04 16 6 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 7 C 0.03 1.48 5.29 84.66 0.45 1.93 16 8 N -0.90 -46.10 11.29 21.45 0.24 -45.85 16 9 Si 0.96 39.74 29.54 68.60 2.03 41.76 16 10 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 13 N -0.66 -26.62 5.14 -330.94 -1.70 -28.32 16 14 C 0.38 14.84 6.95 179.74 1.25 16.09 16 15 N -0.59 -23.30 10.62 -189.08 -2.01 -25.31 16 16 C 0.09 3.25 6.92 39.76 0.28 3.52 16 17 C -0.20 -6.20 6.52 22.89 0.15 -6.05 16 18 C -0.04 -1.03 9.84 22.43 0.22 -0.81 16 19 C -0.03 -0.55 6.32 22.30 0.14 -0.40 16 20 Cl -0.04 -0.60 28.96 -2.72 -0.08 -0.67 16 21 C -0.11 -2.39 9.75 22.21 0.22 -2.17 16 22 C 0.11 3.33 7.35 22.81 0.17 3.50 16 23 F -0.13 -4.24 17.26 44.97 0.78 -3.46 16 24 S 0.11 3.50 17.76 -56.49 -1.00 2.50 16 25 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.49 5.28 -2.99 -0.02 1.47 16 27 H 0.06 1.98 6.75 -2.38 -0.02 1.97 16 28 H 0.09 4.13 5.95 -2.39 -0.01 4.12 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 31 H 0.41 16.05 8.66 -92.71 -0.80 15.25 16 32 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -53.43 307.73 2.57 -50.85 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.38 Total: 17.51 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 3.94 Total: -9.00 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -3.47 Total: -99.49 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.76 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.00 Total: 2.50 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.67 kcal Total: -53.43 2.57 -50.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651719249.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.507 kcal (2) G-P(sol) polarization free energy of solvation -53.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds