Wall clock time and date at job start Tue Mar 31 2020 10:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99735 * 2 1 4 4 H 1.48508 * 109.46609 * 266.06683 * 3 2 1 5 5 H 1.48495 * 109.47276 * 26.06592 * 3 2 1 6 6 H 1.48493 * 109.46979 * 146.07150 * 3 2 1 7 7 C 1.37873 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00054 * 353.92041 * 7 2 1 9 9 C 1.50699 * 119.99859 * 173.91483 * 7 2 1 10 10 O 1.42902 * 110.64341 * 325.52197 * 9 7 2 11 11 C 1.55161 * 110.71994 * 88.66431 * 9 7 2 12 12 C 1.54906 * 101.58482 * 154.03984 * 11 9 7 13 13 N 1.47425 * 104.83202 * 322.99488 * 12 11 9 14 14 C 1.34779 * 125.64630 * 204.09067 * 13 12 11 15 15 O 1.21529 * 120.00238 * 180.02562 * 14 13 12 16 16 C 1.48003 * 120.00077 * 0.02562 * 14 13 12 17 17 N 1.32839 * 119.74147 * 359.97309 * 16 14 13 18 18 C 1.31452 * 121.69059 * 180.02562 * 17 16 14 19 19 C 1.38624 * 120.99747 * 359.74236 * 18 17 16 20 20 C 1.38578 * 119.37924 * 0.53562 * 19 18 17 21 21 Cl 1.73597 * 120.77737 * 179.75511 * 20 19 18 22 22 C 1.39115 * 118.44060 * 359.47916 * 20 19 18 23 23 F 1.35101 * 120.51271 * 180.23245 * 22 20 19 24 24 C 1.47015 * 108.70574 * 24.34931 * 13 12 11 25 25 H 0.96997 * 120.00383 * 0.02562 * 1 2 3 26 26 H 0.96701 * 113.99864 * 297.55126 * 10 9 7 27 27 H 1.08998 * 111.00212 * 35.96403 * 11 9 7 28 28 H 1.08998 * 111.00025 * 272.11750 * 11 9 7 29 29 H 1.08995 * 110.37067 * 204.15405 * 12 11 9 30 30 H 1.09006 * 110.45813 * 81.87144 * 12 11 9 31 31 H 1.08008 * 119.50123 * 179.97438 * 18 17 16 32 32 H 1.08008 * 120.31367 * 180.28800 * 19 18 17 33 33 H 1.09002 * 109.87888 * 118.13242 * 24 13 12 34 34 H 1.09001 * 109.88767 * 239.29985 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5797 1.9984 -1.3969 5 1 1.4074 2.6753 0.6152 6 1 3.5026 1.4657 0.7814 7 6 2.0046 -1.1940 0.0005 8 1 1.4691 -2.1267 0.1000 9 6 3.5052 -1.1977 -0.1378 10 8 3.9346 -0.1386 -0.9957 11 6 4.1849 -1.0877 1.2526 12 6 5.5507 -1.7681 0.9859 13 7 5.2463 -2.8766 0.0628 14 6 5.9834 -3.9942 -0.0927 15 8 5.6358 -4.8458 -0.8869 16 6 7.2163 -4.1843 0.7037 17 7 7.5919 -3.2499 1.5700 18 6 8.6798 -3.3790 2.2964 19 6 9.4802 -4.5058 2.1895 20 6 9.1317 -5.5047 1.2945 21 17 10.1111 -6.9282 1.1265 22 6 7.9755 -5.3427 0.5381 23 9 7.5939 -6.2926 -0.3436 24 6 4.0088 -2.5583 -0.6643 25 1 -0.4850 0.8400 -0.0004 26 1 3.6061 -0.2092 -1.9025 27 1 3.6185 -1.6316 2.0085 28 1 4.3176 -0.0450 1.5412 29 1 5.9709 -2.1528 1.9151 30 1 6.2418 -1.0656 0.5200 31 1 8.9523 -2.5969 2.9898 32 1 10.3693 -4.6024 2.7951 33 1 4.2135 -2.4917 -1.7329 34 1 3.2596 -3.3271 -0.4755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771752312.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:21 Heat of formation + Delta-G solvation = -98.029161 kcal Electronic energy + Delta-G solvation = -23909.886909 eV Core-core repulsion = 19976.187122 eV Total energy + Delta-G solvation = -3933.699787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.25621 -41.86970 -40.60682 -39.18921 -38.00526 -36.44858 -34.45688 -33.66331 -32.50195 -31.71103 -29.98588 -27.66147 -25.89198 -24.70098 -23.90601 -21.74854 -21.23464 -19.60906 -19.02917 -18.89451 -18.40721 -17.49713 -17.22701 -17.13426 -16.66247 -16.56393 -16.19075 -15.44775 -15.28454 -14.96172 -14.74370 -14.62950 -14.54118 -14.21354 -14.00664 -13.84384 -13.50543 -13.24414 -13.19803 -12.75019 -12.37185 -12.30162 -12.20624 -11.85194 -11.60136 -11.20591 -10.76708 -10.71244 -10.58906 -10.39568 -10.36901 -9.68525 -8.33810 -6.49129 -0.82949 -0.42398 0.54542 1.44279 1.53692 1.55291 1.69650 1.77599 2.40199 2.46306 2.56628 2.84321 2.98606 3.23172 3.40361 3.50737 3.80392 3.90004 4.10035 4.13573 4.35885 4.42148 4.45129 4.55449 4.73368 4.81156 5.03824 5.14472 5.22493 5.29027 5.42462 5.53058 6.04229 6.30658 6.41441 6.57507 6.85751 6.92950 7.28923 8.79502 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.033236 B = 0.003447 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.262757 B = 8120.476197 C = 8647.892158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.025 3.975 3 Si 1.007 2.993 4 H -0.282 1.282 5 H -0.334 1.334 6 H -0.246 1.246 7 C -0.553 4.553 8 H 0.037 0.963 9 C 0.220 3.780 10 O -0.560 6.560 11 C -0.125 4.125 12 C 0.114 3.886 13 N -0.588 5.588 14 C 0.564 3.436 15 O -0.572 6.572 16 C 0.050 3.950 17 N -0.434 5.434 18 C 0.116 3.884 19 C -0.084 4.084 20 C -0.047 4.047 21 Cl -0.019 7.019 22 C 0.094 3.906 23 F -0.116 7.116 24 C 0.098 3.902 25 H 0.268 0.732 26 H 0.382 0.618 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.232 0.768 32 H 0.208 0.792 33 H 0.064 0.936 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.581 -5.867 8.086 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.175 4.175 3 Si 0.839 3.161 4 H -0.208 1.208 5 H -0.267 1.267 6 H -0.170 1.170 7 C -0.591 4.591 8 H 0.055 0.945 9 C 0.180 3.820 10 O -0.368 6.368 11 C -0.163 4.163 12 C -0.007 4.007 13 N -0.318 5.318 14 C 0.352 3.648 15 O -0.452 6.452 16 C -0.087 4.087 17 N -0.146 5.146 18 C -0.045 4.045 19 C -0.104 4.104 20 C -0.082 4.082 21 Cl 0.011 6.989 22 C 0.070 3.930 23 F -0.094 7.094 24 C -0.025 4.025 25 H 0.077 0.923 26 H 0.232 0.768 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.138 0.862 30 H 0.096 0.904 31 H 0.248 0.752 32 H 0.225 0.775 33 H 0.083 0.917 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 25.089 -5.556 8.184 26.969 hybrid contribution -0.566 -0.943 -1.293 1.698 sum 24.523 -6.499 6.891 26.288 Atomic orbital electron populations 1.70093 1.08737 1.28699 1.50050 1.25926 0.95352 1.03910 0.92282 0.84791 0.77081 0.75515 0.78754 1.20833 1.26655 1.17042 1.21384 0.91016 0.93690 1.52975 0.94499 1.19951 0.91442 0.81998 0.88632 1.86087 1.76210 1.49278 1.25261 1.23131 0.94978 1.01950 0.96236 1.22801 0.96452 0.86909 0.94511 1.48415 1.24259 1.18637 1.40517 1.17789 0.83170 0.81147 0.82665 1.90812 1.71873 1.43695 1.38839 1.20864 0.96492 0.91972 0.99403 1.67963 1.16704 1.26318 1.03585 1.23984 0.87250 0.97518 0.95751 1.22921 1.02284 0.90381 0.94791 1.21610 0.92768 0.94033 0.99820 1.98434 1.67524 1.36120 1.96861 1.18651 0.94813 0.87874 0.91676 1.91601 1.90586 1.61594 1.65600 1.22681 0.84833 0.98953 0.96063 0.92304 0.76836 0.90475 0.89160 0.86194 0.90405 0.75181 0.77459 0.91745 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.90 13.96 21.45 0.30 -56.60 16 2 C 0.03 1.40 5.46 84.65 0.46 1.86 16 3 Si 1.01 46.11 24.83 68.60 1.70 47.81 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.33 -15.84 7.11 99.48 0.71 -15.14 16 6 H -0.25 -10.34 5.19 99.48 0.52 -9.83 16 7 C -0.55 -29.92 8.82 25.60 0.23 -29.70 16 8 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 9 C 0.22 9.55 0.68 -10.34 -0.01 9.55 16 10 O -0.56 -22.61 8.74 -148.98 -1.30 -23.91 16 11 C -0.12 -4.66 5.88 31.99 0.19 -4.47 16 12 C 0.11 3.56 5.93 86.85 0.51 4.07 16 13 N -0.59 -21.82 3.33 -815.00 -2.71 -24.53 16 14 C 0.56 21.20 7.84 86.83 0.68 21.88 16 15 O -0.57 -25.56 15.64 -3.81 -0.06 -25.62 16 16 C 0.05 1.41 6.72 41.88 0.28 1.69 16 17 N -0.43 -8.98 6.59 -184.84 -1.22 -10.20 16 18 C 0.12 1.13 11.17 84.84 0.95 2.08 16 19 C -0.08 -0.70 9.93 22.44 0.22 -0.47 16 20 C -0.05 -0.80 6.37 22.56 0.14 -0.65 16 21 Cl -0.02 -0.29 28.75 -2.72 -0.08 -0.37 16 22 C 0.09 2.46 7.29 22.78 0.17 2.62 16 23 F -0.12 -3.73 15.20 44.97 0.68 -3.05 16 24 C 0.10 4.10 6.22 86.74 0.54 4.64 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.38 13.87 8.97 -74.06 -0.66 13.21 16 27 H 0.08 2.96 8.04 -2.39 -0.02 2.94 16 28 H 0.09 3.27 6.23 -2.39 -0.01 3.26 16 29 H 0.12 3.13 5.88 -2.39 -0.01 3.12 16 30 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 31 H 0.23 -0.02 8.06 -2.91 -0.02 -0.05 16 32 H 0.21 -0.17 8.06 -2.91 -0.02 -0.19 16 33 H 0.06 2.64 8.04 -2.39 -0.02 2.62 16 34 H 0.05 2.40 7.66 -2.39 -0.02 2.38 16 Total: -1.00 -75.71 303.97 2.00 -73.71 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.32 Total: 9.66 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 4.37 Total: 13.10 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -3.63 Total: -91.33 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -1.36 Total: -49.53 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.68 Total: -3.05 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.70 Total: 47.81 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -75.71 2.00 -73.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771752312.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.323 kcal (2) G-P(sol) polarization free energy of solvation -75.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds