Wall clock time and date at job start Tue Mar 31 2020 10:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48499 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47079 * 300.00005 * 3 2 1 6 6 H 1.48501 * 109.46992 * 60.00111 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34770 * 125.65124 * 155.91495 * 13 12 11 15 15 O 1.21540 * 120.00089 * 179.97438 * 14 13 12 16 16 C 1.47998 * 120.00167 * 359.97438 * 14 13 12 17 17 N 1.32839 * 119.74539 * 359.72662 * 16 14 13 18 18 C 1.31448 * 121.70137 * 179.75196 * 17 16 14 19 19 C 1.38635 * 120.99008 * 0.52440 * 18 17 16 20 20 C 1.38570 * 119.37930 * 359.74182 * 19 18 17 21 21 Cl 1.73604 * 120.78003 * 180.02562 * 20 19 18 22 22 C 1.39114 * 118.44372 * 0.02562 * 20 19 18 23 23 F 1.35101 * 120.51178 * 179.97438 * 22 20 19 24 24 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 25 25 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 27 27 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 28 28 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 29 29 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 30 30 H 1.09005 * 110.36554 * 278.05837 * 12 11 9 31 31 H 1.07996 * 119.50853 * 180.29186 * 18 17 16 32 32 H 1.07998 * 120.31044 * 179.76484 * 19 18 17 33 33 H 1.09003 * 109.87825 * 241.63649 * 24 13 12 34 34 H 1.09001 * 109.88209 * 120.47703 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0371 -4.6058 -2.8063 15 8 -0.6967 -3.9111 -3.5543 16 6 0.1452 -6.0446 -3.1011 17 7 0.8717 -6.7981 -2.2830 18 6 1.0546 -8.0807 -2.5052 19 6 0.5012 -8.6989 -3.6158 20 6 -0.2603 -7.9521 -4.5006 21 17 -0.9709 -8.6892 -5.9026 22 6 -0.4419 -6.5979 -4.2390 23 9 -1.1761 -5.8305 -5.0740 24 6 0.4282 -2.6578 -1.2974 25 1 -0.4850 0.8400 0.0004 26 1 -0.2247 -1.8680 1.2334 27 1 3.0948 -3.4670 -0.6886 28 1 2.5461 -3.9997 0.9358 29 1 1.9712 -5.5343 -1.2166 30 1 0.7139 -5.2644 0.0276 31 1 1.6480 -8.6609 -1.8141 32 1 0.6616 -9.7526 -3.7897 33 1 -0.6140 -2.4001 -1.1087 34 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771752313.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:23 Heat of formation + Delta-G solvation = -80.852854 kcal Electronic energy + Delta-G solvation = -23927.350805 eV Core-core repulsion = 19994.395839 eV Total energy + Delta-G solvation = -3932.954966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.062 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.09239 -40.69081 -39.02369 -37.28297 -37.10578 -34.37169 -32.65455 -32.19437 -31.42079 -29.98957 -27.83561 -25.88958 -24.55016 -23.73035 -22.47406 -20.05111 -19.48430 -17.95902 -17.80172 -17.21047 -17.10251 -16.29119 -15.83988 -15.42940 -14.94228 -14.81957 -14.60316 -14.26148 -13.80293 -13.70227 -13.24963 -13.02153 -12.96479 -12.88139 -12.56869 -12.10909 -11.68272 -11.54688 -11.46313 -11.08815 -10.86296 -10.61380 -10.48268 -10.29233 -10.05698 -9.90573 -9.46426 -9.33780 -9.24111 -8.67171 -8.32823 -7.90767 -6.29632 -4.38431 0.17305 0.45657 1.37964 2.69003 3.15082 3.21201 3.29267 3.32600 3.60275 3.66739 3.93146 4.19857 4.26013 4.32549 4.84643 4.94236 5.00061 5.19156 5.28530 5.54557 5.85577 5.90825 5.96568 6.14259 6.39939 6.56091 6.78760 6.86933 6.93782 7.24666 7.27361 7.37119 7.72761 7.98420 8.09824 8.51288 8.66184 9.30264 9.40406 10.78022 Molecular weight = 314.06amu Principal moments of inertia in cm(-1) A = 0.028403 B = 0.003474 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.582378 B = 8057.733634 C = 8643.309727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.122 4.122 12 C 0.104 3.896 13 N -0.582 5.582 14 C 0.564 3.436 15 O -0.531 6.531 16 C 0.079 3.921 17 N -0.419 5.419 18 C 0.099 3.901 19 C -0.122 4.122 20 C -0.044 4.044 21 Cl -0.028 7.028 22 C 0.115 3.885 23 F -0.092 7.092 24 C 0.101 3.899 25 H 0.270 0.730 26 H 0.384 0.616 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.181 0.819 32 H 0.159 0.841 33 H 0.069 0.931 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 -18.575 -6.039 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.160 4.160 12 C -0.019 4.019 13 N -0.312 5.312 14 C 0.349 3.651 15 O -0.408 6.408 16 C -0.061 4.061 17 N -0.130 5.130 18 C -0.061 4.061 19 C -0.142 4.142 20 C -0.079 4.079 21 Cl 0.001 6.999 22 C 0.091 3.909 23 F -0.069 7.069 24 C -0.020 4.020 25 H 0.080 0.920 26 H 0.235 0.765 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.198 0.802 32 H 0.176 0.824 33 H 0.087 0.913 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.753 -18.229 -5.818 19.215 hybrid contribution -0.561 0.987 -1.197 1.650 sum 1.192 -17.242 -7.016 18.653 Atomic orbital electron populations 1.69650 1.06006 1.27897 1.49877 1.25093 0.95060 0.99829 0.93370 0.86340 0.80063 0.82702 0.77771 1.19567 1.20758 1.20731 1.21569 0.93784 0.90051 1.52124 0.91379 1.19499 0.86156 0.92334 0.81283 1.86093 1.53586 1.52694 1.47039 1.22829 0.97597 0.95228 1.00360 1.22650 0.93477 0.95112 0.90654 1.48620 1.48056 1.12814 1.21716 1.17164 0.81553 0.84408 0.82009 1.90853 1.40896 1.60728 1.48363 1.21747 0.96603 0.96555 0.91176 1.68108 1.11360 1.06345 1.27161 1.23089 0.97241 0.90384 0.95396 1.22288 0.96056 1.02098 0.93798 1.21440 1.01121 0.91785 0.93564 1.98420 1.81947 1.81552 1.38009 1.18415 0.94427 0.87664 0.90411 1.91668 1.72880 1.74045 1.68355 1.23164 1.02090 0.77278 0.99461 0.91968 0.76467 0.90670 0.90492 0.89102 0.91719 0.80234 0.82353 0.91312 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.74 10.97 55.43 0.61 -23.14 16 2 C 0.07 1.80 5.27 -17.82 -0.09 1.71 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.54 -13.93 8.12 -34.44 -0.28 -14.21 16 8 H 0.07 1.74 7.77 -52.49 -0.41 1.33 16 9 C 0.25 5.96 0.86 -89.94 -0.08 5.89 16 10 O -0.58 -14.66 13.09 -35.23 -0.46 -15.12 16 11 C -0.12 -2.43 6.22 -24.59 -0.15 -2.58 16 12 C 0.10 1.87 5.93 -2.53 -0.02 1.86 16 13 N -0.58 -12.26 3.33 -171.57 -0.57 -12.83 16 14 C 0.56 11.68 7.84 -12.26 -0.10 11.59 16 15 O -0.53 -12.66 15.64 5.33 0.08 -12.58 16 16 C 0.08 1.28 6.72 -82.96 -0.56 0.73 16 17 N -0.42 -5.54 6.59 -9.78 -0.06 -5.61 16 18 C 0.10 0.85 11.18 -17.57 -0.20 0.66 16 19 C -0.12 -0.96 9.93 -39.31 -0.39 -1.35 16 20 C -0.04 -0.48 6.37 -39.13 -0.25 -0.73 16 21 Cl -0.03 -0.28 28.75 -51.86 -1.49 -1.77 16 22 C 0.11 1.70 7.29 -38.79 -0.28 1.42 16 23 F -0.09 -1.56 15.20 2.25 0.03 -1.53 16 24 C 0.10 2.45 5.39 -3.07 -0.02 2.44 16 25 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.38 9.92 7.17 45.56 0.33 10.24 16 27 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.09 1.42 5.87 -51.93 -0.31 1.11 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.07 1.82 8.01 -51.93 -0.42 1.40 16 34 H 0.07 1.83 7.82 -51.93 -0.41 1.43 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -30.13 310.95 -7.06 -37.18 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -2.45 Total: 7.96 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -2.41 Total: 7.42 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.03 Total: -41.58 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.38 Total: -27.70 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.03 Total: -1.53 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.49 Total: -1.77 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.13 -7.06 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771752313.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.669 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds