Wall clock time and date at job start Tue Mar 31 2020 10:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33930 * 124.48844 * 2 1 4 4 C 1.37355 * 115.13829 * 180.02562 * 3 2 1 5 5 C 1.37201 * 113.20808 * 0.02562 * 4 3 2 6 6 C 1.41386 * 125.47787 * 179.97438 * 5 4 3 7 7 C 1.35933 * 119.99655 * 180.02562 * 6 5 4 8 8 C 1.41242 * 119.99964 * 180.02562 * 7 6 5 9 9 O 1.21889 * 119.99801 * 0.02562 * 8 7 6 10 10 C 1.47736 * 120.00093 * 179.97438 * 8 7 6 11 11 C 1.39764 * 120.07387 * 0.31421 * 10 8 7 12 12 C 1.37667 * 119.92305 * 180.25408 * 11 10 8 13 13 C 1.39143 * 120.07323 * 359.45528 * 12 11 10 14 14 O 1.35580 * 119.92100 * 180.27963 * 13 12 11 15 15 C 1.34776 * 117.00117 * 354.44128 * 14 13 12 16 16 H 1.08004 * 119.99933 * 5.06187 * 15 14 13 17 17 C 1.38729 * 120.00070 * 185.05536 * 15 14 13 18 18 N 1.31502 * 119.99677 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00242 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46992 * 60.00344 * 19 17 15 21 21 H 1.48497 * 109.46950 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47235 * 300.00355 * 19 17 15 23 23 C 1.39140 * 120.14820 * 0.25179 * 13 12 11 24 24 C 1.37662 * 120.07884 * 0.02562 * 23 13 12 25 25 S 1.70610 * 124.48392 * 180.27151 * 2 1 3 26 26 H 1.08992 * 109.47134 * 89.99679 * 1 2 3 27 27 H 1.08997 * 109.46991 * 210.00254 * 1 2 3 28 28 H 1.09003 * 109.46778 * 329.99718 * 1 2 3 29 29 H 1.08000 * 122.43313 * 0.02562 * 3 2 1 30 30 H 1.08003 * 123.39416 * 179.97438 * 4 3 2 31 31 H 1.07997 * 120.00134 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.00207 * 359.97438 * 7 6 5 33 33 H 1.08004 * 120.03970 * 359.97438 * 11 10 8 34 34 H 1.08000 * 119.95733 * 179.73087 * 12 11 10 35 35 H 0.96997 * 119.99921 * 179.97438 * 18 17 15 36 36 H 1.07999 * 119.96036 * 180.02562 * 23 13 12 37 37 H 1.07995 * 120.03539 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1039 0.0000 4 6 3.6207 0.8807 -0.0006 5 6 3.9493 -0.4513 -0.0016 6 6 5.2637 -0.9723 -0.0028 7 6 5.4617 -2.3171 -0.0043 8 6 6.7747 -2.8376 -0.0050 9 8 7.7302 -2.0808 -0.0039 10 6 6.9900 -4.2992 -0.0060 11 6 5.8955 -5.1683 -0.0129 12 6 6.0996 -6.5297 -0.0086 13 6 7.3938 -7.0407 -0.0088 14 8 7.5913 -8.3821 -0.0102 15 6 6.4979 -9.1617 0.1050 16 1 5.5145 -8.7152 0.1106 17 6 6.6356 -10.5376 0.2161 18 7 7.8330 -11.0812 0.2096 19 14 5.1202 -11.6182 0.3750 20 1 4.2573 -11.4395 -0.8203 21 1 5.5350 -13.0403 0.4784 22 1 4.3637 -11.2338 1.5935 23 6 8.4856 -6.1783 -0.0081 24 6 8.2887 -4.8158 -0.0067 25 16 2.4730 -1.4063 -0.0067 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.8420 2.0975 0.0004 30 1 4.3537 1.6739 -0.0010 31 1 6.1103 -0.3018 -0.0027 32 1 4.6151 -2.9876 -0.0041 33 1 4.8906 -4.7723 -0.0171 34 1 5.2542 -7.2018 -0.0095 35 1 7.9294 -12.0432 0.2876 36 1 9.4889 -6.5782 -0.0086 37 1 9.1366 -4.1470 -0.0057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005155884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:30 Heat of formation + Delta-G solvation = 3.363163 kcal Electronic energy + Delta-G solvation = -21268.526389 eV Core-core repulsion = 17875.576578 eV Total energy + Delta-G solvation = -3392.949811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.076 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66650 -38.73662 -38.29050 -36.21655 -34.50681 -32.54015 -31.56405 -30.34739 -29.54040 -27.22063 -25.63481 -24.08430 -23.15101 -22.14065 -21.20749 -19.64141 -18.91453 -18.14379 -17.40077 -16.71552 -16.37961 -15.33869 -15.07840 -14.63623 -14.49309 -14.33454 -14.11971 -13.87593 -13.70801 -13.66284 -13.18154 -12.98074 -12.76417 -12.61063 -12.55799 -12.19554 -11.87094 -11.83933 -11.64597 -11.37225 -10.95606 -10.91140 -10.77717 -10.55990 -10.35183 -9.51158 -9.34306 -9.01545 -8.82787 -8.35426 -8.14661 -7.39528 -6.65856 -4.21603 -0.08747 1.27467 1.30053 1.71659 1.97193 2.17064 2.63178 3.03076 3.03972 3.07576 3.57190 3.81506 4.45967 4.49180 4.54927 4.84323 4.92887 5.00064 5.03132 5.09846 5.12123 5.15308 5.26133 5.50161 5.54030 5.65436 5.70044 5.73147 5.93708 6.03102 6.06411 6.16752 6.29153 6.38504 6.55874 6.76915 6.84334 7.11533 7.16824 7.24778 7.65018 7.79258 8.08968 8.78457 9.45341 10.50588 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.002672 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.530829 B =10477.229319 C =12182.342125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.215 4.215 3 C -0.150 4.150 4 C -0.101 4.101 5 C -0.196 4.196 6 C 0.003 3.997 7 C -0.223 4.223 8 C 0.430 3.570 9 O -0.493 6.493 10 C -0.269 4.269 11 C -0.024 4.024 12 C -0.248 4.248 13 C 0.175 3.825 14 O -0.159 6.159 15 C -0.395 4.395 16 H 0.097 0.903 17 C 0.042 3.958 18 N -0.850 5.850 19 Si 0.945 3.055 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.206 4.206 24 C -0.014 4.014 25 S 0.202 5.798 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.275 0.725 36 H 0.123 0.877 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.449 18.927 -0.249 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.334 4.334 3 C -0.181 4.181 4 C -0.132 4.132 5 C -0.314 4.314 6 C -0.017 4.017 7 C -0.244 4.244 8 C 0.317 3.683 9 O -0.378 6.378 10 C -0.271 4.271 11 C -0.042 4.042 12 C -0.267 4.267 13 C 0.118 3.882 14 O -0.060 6.060 15 C -0.470 4.470 16 H 0.115 0.885 17 C -0.164 4.164 18 N -0.483 5.483 19 Si 0.769 3.231 20 H -0.192 1.192 21 H -0.201 1.201 22 H -0.192 1.192 23 C -0.225 4.225 24 C -0.033 4.033 25 S 0.471 5.529 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.025 17.332 -0.258 21.682 hybrid contribution -0.635 0.937 0.071 1.134 sum -13.660 18.269 -0.188 22.812 Atomic orbital electron populations 1.20364 0.87670 1.03332 1.02916 1.24258 1.01533 0.98254 1.09360 1.19893 0.92910 0.99284 1.05977 1.20925 0.96347 0.95124 1.00762 1.22655 0.97296 0.96964 1.14449 1.20847 0.93653 0.95943 0.91264 1.22715 0.99651 0.95557 1.06492 1.18841 0.88062 0.88860 0.72490 1.90607 1.44996 1.61264 1.40899 1.19745 0.94339 0.93368 1.19603 1.20951 0.97125 0.92709 0.93462 1.21096 0.97273 0.95307 1.13018 1.19636 0.93123 0.84909 0.90501 1.83910 1.35457 1.11360 1.75277 1.21443 0.85409 0.87910 1.52236 0.88520 1.25409 0.98799 0.96281 0.95937 1.70002 1.22122 1.12608 1.43569 0.85709 0.79469 0.78484 0.79444 1.19221 1.20075 1.19214 1.20188 0.97679 0.91971 1.12702 1.20795 0.95914 0.93859 0.92688 1.83239 0.94500 1.07206 1.67911 0.90576 0.91140 0.90520 0.84399 0.83547 0.83872 0.85698 0.86818 0.85006 0.91491 0.85942 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.31 36.01 0.37 -0.13 16 2 C -0.21 -1.84 6.28 -35.82 -0.22 -2.06 16 3 C -0.15 -1.27 9.99 -41.42 -0.41 -1.68 16 4 C -0.10 -0.93 10.25 -40.28 -0.41 -1.35 16 5 C -0.20 -2.14 6.21 -38.76 -0.24 -2.38 16 6 C 0.00 0.04 9.37 -39.21 -0.37 -0.33 16 7 C -0.22 -3.10 8.84 -39.27 -0.35 -3.45 16 8 C 0.43 7.37 6.89 -34.56 -0.24 7.13 16 9 O -0.49 -9.40 16.11 5.02 0.08 -9.32 16 10 C -0.27 -4.99 5.88 -104.87 -0.62 -5.60 16 11 C -0.02 -0.43 9.42 -39.22 -0.37 -0.80 16 12 C -0.25 -5.13 9.15 -39.45 -0.36 -5.49 16 13 C 0.18 4.10 6.66 -38.91 -0.26 3.84 16 14 O -0.16 -4.35 9.74 0.72 0.01 -4.34 16 15 C -0.39 -10.45 9.48 30.91 0.29 -10.15 16 16 H 0.10 2.33 5.19 -52.48 -0.27 2.06 16 17 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 18 N -0.85 -23.80 13.67 55.48 0.76 -23.04 16 19 Si 0.95 19.35 29.55 -169.99 -5.02 14.32 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.21 -4.35 9.97 -39.46 -0.39 -4.75 16 24 C -0.01 -0.27 9.59 -39.22 -0.38 -0.65 16 25 S 0.20 1.97 21.71 -107.50 -2.33 -0.36 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.14 1.72 7.46 -52.49 -0.39 1.33 16 32 H 0.13 1.56 5.19 -52.49 -0.27 1.29 16 33 H 0.11 1.65 6.19 -52.48 -0.32 1.32 16 34 H 0.13 2.65 5.62 -52.49 -0.29 2.35 16 35 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 37 H 0.12 2.20 7.64 -52.49 -0.40 1.80 16 LS Contribution 340.08 15.07 5.12 5.12 Total: -1.00 -30.44 340.08 -9.07 -39.50 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.63 Total: 4.95 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: -4.05 Total: -26.84 kcal Atomic # 7 Polarization: -23.80 SS G_CDS: 0.76 Total: -23.04 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.32 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.33 Total: -0.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.44 -9.07 -39.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005155884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.866 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds