Wall clock time and date at job start Tue Mar 31 2020 10:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33930 * 124.48844 * 2 1 4 4 C 1.37355 * 115.13829 * 180.02562 * 3 2 1 5 5 C 1.37201 * 113.20808 * 0.02562 * 4 3 2 6 6 C 1.41386 * 125.47787 * 179.97438 * 5 4 3 7 7 C 1.35933 * 119.99655 * 180.02562 * 6 5 4 8 8 C 1.41242 * 119.99964 * 180.02562 * 7 6 5 9 9 O 1.21889 * 119.99801 * 0.02562 * 8 7 6 10 10 C 1.47736 * 120.00093 * 179.97438 * 8 7 6 11 11 C 1.39764 * 120.07387 * 0.31421 * 10 8 7 12 12 C 1.37667 * 119.92305 * 180.25408 * 11 10 8 13 13 C 1.39143 * 120.07323 * 359.45528 * 12 11 10 14 14 O 1.35580 * 119.92100 * 180.27963 * 13 12 11 15 15 C 1.34776 * 117.00117 * 354.44128 * 14 13 12 16 16 H 1.08004 * 119.99933 * 5.06187 * 15 14 13 17 17 C 1.38729 * 120.00070 * 185.05536 * 15 14 13 18 18 N 1.31502 * 119.99677 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00242 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46992 * 60.00344 * 19 17 15 21 21 H 1.48497 * 109.46950 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47235 * 300.00355 * 19 17 15 23 23 C 1.39140 * 120.14820 * 0.25179 * 13 12 11 24 24 C 1.37662 * 120.07884 * 0.02562 * 23 13 12 25 25 S 1.70610 * 124.48392 * 180.27151 * 2 1 3 26 26 H 1.08992 * 109.47134 * 89.99679 * 1 2 3 27 27 H 1.08997 * 109.46991 * 210.00254 * 1 2 3 28 28 H 1.09003 * 109.46778 * 329.99718 * 1 2 3 29 29 H 1.08000 * 122.43313 * 0.02562 * 3 2 1 30 30 H 1.08003 * 123.39416 * 179.97438 * 4 3 2 31 31 H 1.07997 * 120.00134 * 0.02562 * 6 5 4 32 32 H 1.07997 * 120.00207 * 359.97438 * 7 6 5 33 33 H 1.08004 * 120.03970 * 359.97438 * 11 10 8 34 34 H 1.08000 * 119.95733 * 179.73087 * 12 11 10 35 35 H 0.96997 * 119.99921 * 179.97438 * 18 17 15 36 36 H 1.07999 * 119.96036 * 180.02562 * 23 13 12 37 37 H 1.07995 * 120.03539 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1039 0.0000 4 6 3.6207 0.8807 -0.0006 5 6 3.9493 -0.4513 -0.0016 6 6 5.2637 -0.9723 -0.0028 7 6 5.4617 -2.3171 -0.0043 8 6 6.7747 -2.8376 -0.0050 9 8 7.7302 -2.0808 -0.0039 10 6 6.9900 -4.2992 -0.0060 11 6 5.8955 -5.1683 -0.0129 12 6 6.0996 -6.5297 -0.0086 13 6 7.3938 -7.0407 -0.0088 14 8 7.5913 -8.3821 -0.0102 15 6 6.4979 -9.1617 0.1050 16 1 5.5145 -8.7152 0.1106 17 6 6.6356 -10.5376 0.2161 18 7 7.8330 -11.0812 0.2096 19 14 5.1202 -11.6182 0.3750 20 1 4.2573 -11.4395 -0.8203 21 1 5.5350 -13.0403 0.4784 22 1 4.3637 -11.2338 1.5935 23 6 8.4856 -6.1783 -0.0081 24 6 8.2887 -4.8158 -0.0067 25 16 2.4730 -1.4063 -0.0067 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.8420 2.0975 0.0004 30 1 4.3537 1.6739 -0.0010 31 1 6.1103 -0.3018 -0.0027 32 1 4.6151 -2.9876 -0.0041 33 1 4.8906 -4.7723 -0.0171 34 1 5.2542 -7.2018 -0.0095 35 1 7.9294 -12.0432 0.2876 36 1 9.4889 -6.5782 -0.0086 37 1 9.1366 -4.1470 -0.0057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005155884.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:29 Heat of formation + Delta-G solvation = -12.074923 kcal Electronic energy + Delta-G solvation = -21269.195834 eV Core-core repulsion = 17875.576578 eV Total energy + Delta-G solvation = -3393.619257 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.076 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19687 -40.25270 -39.10138 -37.87677 -35.44124 -34.39904 -32.54083 -31.76757 -31.05845 -28.28847 -27.34216 -25.08174 -24.14900 -23.69501 -22.57461 -20.50073 -20.14945 -19.88862 -19.00387 -17.71430 -17.57866 -16.53625 -16.30549 -16.24340 -15.80293 -15.76201 -15.37523 -15.34584 -14.98425 -14.62384 -14.54579 -14.16602 -13.75869 -13.62926 -13.44612 -13.39376 -13.26555 -13.00350 -12.99529 -12.53685 -12.49959 -12.41883 -12.15291 -11.67357 -11.25977 -11.21214 -10.84860 -10.74979 -9.95375 -9.54434 -9.20707 -8.91676 -8.53596 -6.21120 -1.01901 0.03639 0.53416 0.54855 0.86164 1.00692 1.37189 1.47000 1.53710 1.76729 2.15287 2.26639 2.86654 3.14931 3.27728 3.38236 3.87030 3.89996 4.07091 4.09003 4.15376 4.31362 4.36878 4.46359 4.51598 4.63639 4.69281 4.72442 4.85287 4.96758 5.02937 5.08732 5.12458 5.21540 5.23105 5.34772 5.44253 5.52729 5.55653 5.61156 5.94205 6.01809 6.72590 6.89936 7.64530 8.68139 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.002672 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.530829 B =10477.229319 C =12182.342125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.200 4.200 3 C -0.165 4.165 4 C -0.077 4.077 5 C -0.241 4.241 6 C 0.045 3.955 7 C -0.263 4.263 8 C 0.438 3.562 9 O -0.518 6.518 10 C -0.259 4.259 11 C -0.012 4.012 12 C -0.251 4.251 13 C 0.146 3.854 14 O -0.214 6.214 15 C -0.420 4.420 16 H 0.112 0.888 17 C -0.018 4.018 18 N -0.913 5.913 19 Si 1.021 2.979 20 H -0.254 1.254 21 H -0.273 1.273 22 H -0.255 1.255 23 C -0.215 4.215 24 C -0.017 4.017 25 S 0.195 5.805 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.137 0.863 35 H 0.276 0.724 36 H 0.122 0.878 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.168 22.454 -0.193 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.320 4.320 3 C -0.195 4.195 4 C -0.110 4.110 5 C -0.358 4.358 6 C 0.025 3.975 7 C -0.284 4.284 8 C 0.327 3.673 9 O -0.404 6.404 10 C -0.261 4.261 11 C -0.030 4.030 12 C -0.270 4.270 13 C 0.093 3.907 14 O -0.118 6.118 15 C -0.495 4.495 16 H 0.129 0.871 17 C -0.217 4.217 18 N -0.549 5.549 19 Si 0.840 3.160 20 H -0.178 1.178 21 H -0.198 1.198 22 H -0.179 1.179 23 C -0.234 4.234 24 C -0.035 4.035 25 S 0.464 5.536 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.181 0.819 30 H 0.184 0.816 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.749 20.913 -0.207 26.794 hybrid contribution 0.360 0.538 0.039 0.648 sum -16.390 21.451 -0.167 26.996 Atomic orbital electron populations 1.20527 0.85750 1.04470 1.03981 1.24740 1.02900 0.97673 1.06688 1.20214 0.92555 1.00509 1.06177 1.21327 0.97382 0.94963 0.97286 1.22643 0.97002 0.97935 1.18203 1.20951 0.94563 0.95314 0.86624 1.22402 0.97982 0.96478 1.11532 1.18945 0.89275 0.87646 0.71405 1.90603 1.46075 1.61338 1.42384 1.20230 0.94137 0.94988 1.16719 1.21307 0.99035 0.91255 0.91371 1.21273 0.96313 0.96676 1.12718 1.20131 0.94937 0.84356 0.91256 1.83901 1.36338 1.12889 1.78664 1.21963 0.86006 0.88580 1.52972 0.87094 1.26700 1.02258 0.97503 0.95237 1.70151 1.24857 1.12891 1.47007 0.84610 0.75224 0.76052 0.80156 1.17792 1.19810 1.17865 1.20350 0.97477 0.92684 1.12935 1.21016 0.97195 0.93148 0.92142 1.83292 0.94443 1.08002 1.67866 0.89417 0.90610 0.88838 0.81922 0.81610 0.83822 0.84391 0.82643 0.84542 0.91484 0.86045 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.31 71.24 0.73 0.04 16 2 C -0.20 -2.65 6.28 24.71 0.16 -2.49 16 3 C -0.17 -2.07 9.99 21.08 0.21 -1.86 16 4 C -0.08 -1.14 10.25 21.82 0.22 -0.91 16 5 C -0.24 -4.50 6.21 22.80 0.14 -4.36 16 6 C 0.05 1.01 9.37 22.51 0.21 1.22 16 7 C -0.26 -6.74 8.84 22.47 0.20 -6.54 16 8 C 0.44 14.32 6.89 25.52 0.18 14.49 16 9 O -0.52 -19.09 16.11 -4.95 -0.08 -19.17 16 10 C -0.26 -9.32 5.88 -20.03 -0.12 -9.43 16 11 C -0.01 -0.40 9.42 22.50 0.21 -0.19 16 12 C -0.25 -10.41 9.15 22.35 0.20 -10.21 16 13 C 0.15 7.14 6.66 22.70 0.15 7.29 16 14 O -0.21 -12.42 9.74 -20.33 -0.20 -12.62 16 15 C -0.42 -23.28 9.48 67.94 0.64 -22.64 16 16 H 0.11 5.50 5.19 -2.91 -0.02 5.48 16 17 C -0.02 -0.97 5.49 84.86 0.47 -0.50 16 18 N -0.91 -54.18 13.67 21.62 0.30 -53.89 16 19 Si 1.02 40.54 29.55 68.60 2.03 42.57 16 20 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 23 C -0.22 -9.45 9.97 22.35 0.22 -9.22 16 24 C -0.02 -0.65 9.59 22.50 0.22 -0.43 16 25 S 0.19 3.20 21.71 -56.49 -1.23 1.98 16 26 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 30 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.14 3.11 7.46 -2.91 -0.02 3.09 16 32 H 0.14 3.07 5.19 -2.91 -0.02 3.06 16 33 H 0.16 4.01 6.19 -2.91 -0.02 3.99 16 34 H 0.14 5.48 5.62 -2.91 -0.02 5.47 16 35 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.12 5.21 8.06 -2.91 -0.02 5.18 16 37 H 0.14 4.87 7.64 -2.91 -0.02 4.85 16 Total: -1.00 -70.33 340.08 5.98 -64.35 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 1.11 Total: 22.52 kcal Atomic # 6 Polarization: -49.79 SS G_CDS: 4.05 Total: -45.74 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.30 Total: -53.89 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.28 Total: -31.79 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.23 Total: 1.98 kcal Total: -70.33 5.98 -64.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005155884.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.278 kcal (2) G-P(sol) polarization free energy of solvation -70.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds