Wall clock time and date at job start Tue Mar 31 2020 10:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36024 * 116.99561 * 2 1 4 4 C 1.38698 * 119.97045 * 0.02562 * 3 2 1 5 5 C 1.38468 * 119.97680 * 179.97438 * 4 3 2 6 6 O 1.36023 * 120.03902 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00223 * 0.02717 * 6 5 4 8 8 C 1.39299 * 119.91864 * 359.97438 * 5 4 3 9 9 N 1.40234 * 120.02986 * 180.02562 * 8 5 4 10 10 C 1.46493 * 119.99720 * 180.02562 * 9 8 5 11 11 C 1.50706 * 109.47128 * 179.97438 * 10 9 8 12 12 O 1.21297 * 119.99667 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72554 * 11 10 9 14 14 C 1.37095 * 119.99878 * 180.02562 * 13 11 10 15 15 H 1.08004 * 120.00160 * 359.97438 * 14 13 11 16 16 C 1.38950 * 120.00380 * 179.97438 * 14 13 11 17 17 N 1.31412 * 119.99401 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00554 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46681 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47048 * 120.00010 * 18 16 14 21 21 H 1.48501 * 109.47100 * 240.00460 * 18 16 14 22 22 C 1.38646 * 119.93839 * 0.27732 * 8 5 4 23 23 C 1.38345 * 120.02290 * 359.44598 * 22 8 5 24 24 Cl 1.73594 * 119.96251 * 180.29928 * 23 22 8 25 25 H 1.09006 * 109.46685 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46992 * 299.99752 * 1 2 3 27 27 H 1.09000 * 109.47336 * 60.00378 * 1 2 3 28 28 H 1.07997 * 120.01122 * 359.94705 * 4 3 2 29 29 H 1.09005 * 109.46887 * 299.99126 * 7 6 5 30 30 H 1.08998 * 109.47280 * 59.99321 * 7 6 5 31 31 H 1.09003 * 109.47315 * 179.97438 * 7 6 5 32 32 H 0.97005 * 119.99750 * 359.97438 * 9 8 5 33 33 H 1.09001 * 109.47786 * 60.00154 * 10 9 8 34 34 H 1.08998 * 109.47558 * 300.00017 * 10 9 8 35 35 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 36 36 H 0.97004 * 120.00112 * 179.97438 * 17 16 14 37 37 H 1.08005 * 119.99135 * 179.70187 * 22 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.2904 2.3748 0.0005 5 6 1.9188 3.6087 0.0011 6 8 1.1785 4.7498 0.0011 7 6 -0.2428 4.6012 0.0011 8 6 3.3099 3.6799 0.0016 9 7 3.9488 4.9282 0.0027 10 6 5.4118 5.0023 0.0027 11 6 5.8418 6.4467 0.0033 12 8 5.0079 7.3276 0.0033 13 7 7.1526 6.7597 0.0090 14 6 7.5437 8.0737 0.0101 15 1 6.8012 8.8580 0.0060 16 6 8.8951 8.3964 0.0166 17 7 9.7985 7.4420 0.0221 18 14 9.4280 10.1868 0.0173 19 1 8.2273 11.0605 0.0111 20 1 10.2341 10.4628 1.2336 21 1 10.2461 10.4603 -1.1914 22 6 4.0624 2.5154 -0.0042 23 6 3.4320 1.2839 0.0010 24 17 4.3757 -0.1732 0.0016 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2119 2.3179 0.0001 29 1 -0.5507 4.0525 -0.8890 30 1 -0.5507 4.0523 0.8910 31 1 -0.7111 5.5855 0.0016 32 1 3.4218 5.7427 0.0027 33 1 5.8008 4.5083 -0.8877 34 1 5.8008 4.5067 0.8922 35 1 7.8195 6.0553 0.0131 36 1 10.7420 7.6672 0.0262 37 1 5.1411 2.5696 -0.0087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020046754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:28 Heat of formation + Delta-G solvation = -107.231789 kcal Electronic energy + Delta-G solvation = -23193.449849 eV Core-core repulsion = 19382.811311 eV Total energy + Delta-G solvation = -3810.638537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63987 -40.30004 -39.73406 -38.25621 -37.31242 -36.16771 -35.30126 -33.35751 -31.19924 -30.72864 -28.92389 -28.33913 -27.04962 -25.97408 -23.44961 -22.69169 -21.17285 -20.05596 -19.81421 -18.74265 -17.96932 -17.39154 -17.13025 -16.98258 -16.49577 -16.38632 -16.22762 -16.04745 -15.63364 -15.37383 -15.23370 -14.72035 -14.47506 -13.97543 -13.84374 -13.79209 -13.52142 -12.96248 -12.88137 -12.80387 -12.44814 -12.39576 -12.26510 -12.24837 -12.12018 -11.79751 -11.65687 -11.55855 -10.51862 -10.43875 -10.07825 -9.56867 -8.50474 -7.98547 -5.99955 0.11934 0.44785 1.24548 1.35200 1.42401 1.56203 1.93909 2.15380 2.28983 2.33819 2.53738 2.60055 3.16898 3.20163 3.67111 3.95400 4.11979 4.25931 4.33346 4.40119 4.40989 4.41253 4.44935 4.50951 4.51937 4.59132 4.71373 4.77529 4.84700 5.06683 5.38535 5.39200 5.87830 6.06075 6.27605 6.48759 6.53846 6.79543 7.06082 7.46948 7.99329 8.66685 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.019756 B = 0.002951 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.961387 B = 9485.111970 C =10876.313307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C 0.112 3.888 4 C -0.230 4.230 5 C 0.093 3.907 6 O -0.334 6.334 7 C 0.019 3.981 8 C 0.164 3.836 9 N -0.730 5.730 10 C 0.128 3.872 11 C 0.431 3.569 12 O -0.629 6.629 13 N -0.561 5.561 14 C -0.336 4.336 15 H 0.081 0.919 16 C -0.009 4.009 17 N -0.915 5.915 18 Si 0.994 3.006 19 H -0.273 1.273 20 H -0.270 1.270 21 H -0.270 1.270 22 C -0.133 4.133 23 C -0.066 4.066 24 Cl -0.061 7.061 25 H 0.119 0.881 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.171 0.829 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.407 0.593 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.400 0.600 36 H 0.280 0.720 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.077 -15.635 -0.046 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.063 3.937 4 C -0.250 4.250 5 C 0.043 3.957 6 O -0.248 6.248 7 C -0.075 4.075 8 C 0.061 3.939 9 N -0.365 5.365 10 C -0.001 4.001 11 C 0.219 3.781 12 O -0.517 6.517 13 N -0.197 5.197 14 C -0.466 4.466 15 H 0.099 0.901 16 C -0.210 4.210 17 N -0.555 5.555 18 Si 0.818 3.182 19 H -0.198 1.198 20 H -0.195 1.195 21 H -0.195 1.195 22 C -0.157 4.157 23 C -0.094 4.094 24 Cl -0.033 7.033 25 H 0.138 0.862 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.188 0.812 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.245 0.755 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.992 -15.181 -0.045 23.541 hybrid contribution 0.383 0.757 0.002 0.848 sum -17.610 -14.424 -0.043 22.763 Atomic orbital electron populations 1.23369 0.76516 1.05689 1.02218 1.86150 1.23275 1.25168 1.88962 1.18170 0.89930 0.85191 1.00360 1.21118 1.01553 0.89458 1.12879 1.18383 0.89076 0.86243 1.01960 1.86091 1.21209 1.28544 1.88964 1.23364 0.76270 1.05429 1.02476 1.17139 0.88573 0.86249 1.01984 1.44252 1.04439 1.05208 1.82571 1.20842 0.82321 0.93080 1.03813 1.20625 0.82896 0.91473 0.83129 1.90485 1.52291 1.51105 1.57817 1.41834 1.05712 1.08357 1.63772 1.19715 0.92284 0.84275 1.50294 0.90104 1.26068 0.94959 1.04067 0.95901 1.69672 1.02148 1.34195 1.49508 0.84855 0.78115 0.76884 0.78392 1.19753 1.19535 1.19519 1.20230 1.00607 0.87925 1.06921 1.19772 0.88951 0.87975 1.12677 1.98336 1.72076 1.35623 1.97222 0.86245 0.91664 0.91653 0.81181 0.91221 0.91230 0.86860 0.75526 0.88602 0.88594 0.76549 0.91081 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.66 9.95 -93.83 -0.93 -7.60 16 3 C 0.11 2.63 6.68 22.50 0.15 2.78 16 4 C -0.23 -4.87 8.02 22.43 0.18 -4.69 16 5 C 0.09 2.47 6.70 22.58 0.15 2.62 16 6 O -0.33 -8.68 9.74 -93.82 -0.91 -9.60 16 7 C 0.02 0.28 9.81 113.37 1.11 1.39 16 8 C 0.16 4.92 6.67 38.15 0.25 5.18 16 9 N -0.73 -25.34 5.71 -342.54 -1.96 -27.30 16 10 C 0.13 4.46 5.40 85.64 0.46 4.92 16 11 C 0.43 20.29 7.85 87.66 0.69 20.97 16 12 O -0.63 -34.33 15.24 -3.08 -0.05 -34.37 16 13 N -0.56 -28.25 5.29 -306.98 -1.62 -29.87 16 14 C -0.34 -18.79 9.68 84.04 0.81 -17.98 16 15 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 16 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 17 N -0.92 -48.49 13.05 21.66 0.28 -48.21 16 18 Si 0.99 42.25 29.55 68.60 2.03 44.28 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 22 C -0.13 -3.64 9.09 22.39 0.20 -3.43 16 23 C -0.07 -1.72 6.33 22.42 0.14 -1.58 16 24 Cl -0.06 -1.52 28.49 -2.72 -0.08 -1.60 16 25 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 27 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 28 H 0.17 2.38 4.52 -2.91 -0.01 2.36 16 29 H 0.07 0.79 7.66 -2.38 -0.02 0.77 16 30 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 31 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.41 15.88 6.80 -92.70 -0.63 15.25 16 33 H 0.10 2.96 7.94 -2.39 -0.02 2.94 16 34 H 0.10 2.96 7.96 -2.39 -0.02 2.95 16 35 H 0.40 18.98 7.90 -92.71 -0.73 18.24 16 36 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 37 H 0.15 3.85 6.73 -2.91 -0.02 3.83 16 Total: -1.00 -68.53 334.15 2.28 -66.25 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.22 Total: 36.57 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.74 Total: 11.44 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -3.30 Total: -105.38 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -1.89 Total: -51.57 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -68.53 2.28 -66.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020046754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.979 kcal (2) G-P(sol) polarization free energy of solvation -68.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds