Wall clock time and date at job start Tue Mar 31 2020 10:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00042 * 2 1 4 4 H 1.48503 * 109.46825 * 239.99837 * 3 2 1 5 5 H 1.48493 * 109.46876 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47312 * 119.99734 * 3 2 1 7 7 C 1.37883 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00240 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47196 * 180.02562 * 9 7 2 11 11 C 1.46904 * 110.99620 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46814 * 179.97438 * 11 10 9 13 13 C 1.34912 * 125.63527 * 90.01774 * 12 11 10 14 14 C 1.40666 * 107.08443 * 179.71151 * 13 12 11 15 15 C 1.36318 * 106.71898 * 0.40861 * 14 13 12 16 16 C 1.47023 * 125.96465 * 179.85275 * 15 14 13 17 17 N 1.29354 * 124.84506 * 179.71103 * 16 15 14 18 18 C 1.34370 * 117.87953 * 180.02562 * 17 16 15 19 19 C 1.41285 * 128.75531 * 180.02562 * 18 17 16 20 20 C 1.36115 * 120.53741 * 180.25951 * 19 18 17 21 21 C 1.38776 * 120.78403 * 359.50559 * 20 19 18 22 22 C 1.37697 * 120.01041 * 0.47182 * 21 20 19 23 23 C 1.39356 * 120.05437 * 359.78936 * 22 21 20 24 24 S 1.75806 * 124.84754 * 359.76023 * 16 15 14 25 25 O 1.34176 * 125.63837 * 269.97820 * 12 11 10 26 26 H 0.96997 * 120.00142 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46837 * 60.00118 * 9 7 2 28 28 H 1.09006 * 109.47319 * 300.00706 * 9 7 2 29 29 H 1.00889 * 111.00019 * 56.04780 * 10 9 7 30 30 H 1.09001 * 109.47171 * 60.00292 * 11 10 9 31 31 H 1.08997 * 109.47081 * 299.99478 * 11 10 9 32 32 H 1.08000 * 126.45533 * 359.97438 * 13 12 11 33 33 H 1.07997 * 126.64512 * 180.29386 * 14 13 12 34 34 H 1.08002 * 119.72808 * 359.97438 * 19 18 17 35 35 H 1.07995 * 119.60749 * 179.74487 * 20 19 18 36 36 H 1.08001 * 119.99438 * 180.23850 * 21 20 19 37 37 H 1.07999 * 119.97393 * 179.77327 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6158 0.0027 11 6 1.5052 -4.9071 0.0032 12 6 2.5147 -6.0260 0.0036 13 6 3.0411 -6.6094 1.1003 14 6 3.9294 -7.6042 0.6531 15 6 3.9046 -7.5684 -0.7093 16 6 4.6823 -8.4318 -1.6101 17 7 4.6379 -8.3826 -2.9019 18 6 5.4099 -9.2404 -3.5903 19 6 5.5408 -9.3852 -4.9896 20 6 6.3774 -10.3228 -5.5126 21 6 7.1258 -11.1478 -4.6848 22 6 7.0199 -11.0300 -3.3170 23 6 6.1647 -10.0797 -2.7625 24 16 5.8045 -9.6791 -1.0852 25 8 3.0381 -6.6072 -1.0866 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6246 -2.5563 0.8919 29 1 2.8404 -3.5480 0.7839 30 1 0.8807 -4.9821 -0.8869 31 1 0.8801 -4.9810 0.8931 32 1 2.8187 -6.3624 2.1279 33 1 4.5187 -8.2666 1.2698 34 1 4.9688 -8.7498 -5.6496 35 1 6.4628 -10.4233 -6.5845 36 1 7.7886 -11.8849 -5.1136 37 1 7.5998 -11.6749 -2.6734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037248854.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:48 Heat of formation + Delta-G solvation = 53.258809 kcal Electronic energy + Delta-G solvation = -21303.888042 eV Core-core repulsion = 17945.394620 eV Total energy + Delta-G solvation = -3358.493422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.70810 -41.28087 -37.95974 -37.31583 -34.76019 -34.20963 -32.44463 -32.15495 -30.57034 -28.78751 -26.75822 -25.08170 -23.97600 -23.56491 -22.82771 -22.49781 -21.17688 -19.55005 -18.85742 -18.24208 -17.44164 -17.27873 -16.99364 -16.46279 -16.33394 -15.86554 -15.67675 -15.26317 -15.05168 -14.88447 -14.76247 -14.05542 -13.95958 -13.95134 -13.49719 -13.37354 -13.11072 -12.92364 -12.85272 -12.64739 -12.52656 -12.04965 -11.96377 -11.40565 -11.25575 -11.08395 -10.94482 -10.67695 -10.30818 -9.28990 -9.23176 -9.01514 -8.24030 -6.35173 -1.07361 -0.19020 0.10376 0.43868 0.45236 1.22821 1.41009 1.44549 1.52558 1.70960 1.83348 2.39577 2.61885 2.64742 3.09352 3.41559 3.56135 3.72481 3.86534 3.90041 4.03078 4.23186 4.26133 4.29562 4.45689 4.55055 4.61038 4.79099 4.82273 4.87144 5.02760 5.05274 5.21238 5.21548 5.36805 5.38431 5.57278 5.71871 5.95145 5.98338 6.34435 6.44529 6.61725 6.83363 7.35154 8.87029 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.021228 B = 0.002322 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.723278 B =12056.811336 C =12772.817241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.691 5.691 11 C 0.132 3.868 12 C 0.019 3.981 13 C -0.198 4.198 14 C -0.135 4.135 15 C -0.001 4.001 16 C 0.155 3.845 17 N -0.495 5.495 18 C 0.046 3.954 19 C -0.085 4.085 20 C -0.097 4.097 21 C -0.084 4.084 22 C -0.078 4.078 23 C -0.195 4.195 24 S 0.159 5.841 25 O -0.173 6.173 26 H 0.266 0.734 27 H 0.002 0.998 28 H -0.023 1.023 29 H 0.342 0.658 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.185 0.815 33 H 0.190 0.810 34 H 0.133 0.867 35 H 0.170 0.830 36 H 0.179 0.821 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.625 -27.770 -3.606 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.324 5.324 11 C 0.003 3.997 12 C -0.034 4.034 13 C -0.218 4.218 14 C -0.157 4.157 15 C -0.054 4.054 16 C -0.125 4.125 17 N -0.209 5.209 18 C -0.074 4.074 19 C -0.106 4.106 20 C -0.117 4.117 21 C -0.105 4.105 22 C -0.101 4.101 23 C -0.314 4.314 24 S 0.415 5.585 25 O -0.069 6.069 26 H 0.075 0.925 27 H 0.021 0.979 28 H -0.005 1.005 29 H 0.160 0.840 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.203 0.797 33 H 0.207 0.793 34 H 0.150 0.850 35 H 0.187 0.813 36 H 0.196 0.804 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 15.447 -27.545 -3.864 31.816 hybrid contribution -0.622 1.273 -0.073 1.419 sum 14.825 -26.272 -3.937 30.422 Atomic orbital electron populations 1.70064 1.07659 1.28180 1.51173 1.25922 0.95833 1.03275 0.94496 0.85387 0.78132 0.77686 0.79101 1.19765 1.20587 1.18866 1.21471 0.93761 0.91400 1.51098 0.91979 1.19240 0.90453 0.88055 0.94021 1.60518 1.20963 1.00675 1.50224 1.20410 0.91558 0.84829 1.02895 1.22917 0.99171 0.97179 0.84130 1.21869 1.00629 0.98906 1.00383 1.22130 1.01407 1.01109 0.91102 1.19384 0.98682 0.95219 0.92117 1.23996 0.99291 0.98582 0.90603 1.66634 1.23287 1.24501 1.06519 1.19532 0.96685 0.94485 0.96696 1.20816 0.99832 0.99739 0.90166 1.21196 0.94382 0.93623 1.02524 1.21735 0.98200 0.98790 0.91821 1.20834 0.96588 0.95983 0.96675 1.24209 1.06003 1.04867 0.96326 1.84280 1.39721 1.31204 1.03246 1.84120 1.46160 1.40562 1.36058 0.92485 0.97948 1.00540 0.84012 0.90745 0.89996 0.79744 0.79299 0.84954 0.81276 0.80372 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 2 C 0.00 0.19 5.46 84.66 0.46 0.66 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 7 C -0.54 -31.14 9.32 25.60 0.24 -30.90 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.21 11.26 5.44 85.56 0.47 11.72 16 10 N -0.69 -30.74 6.48 -521.98 -3.38 -34.12 16 11 C 0.13 4.82 6.21 85.56 0.53 5.35 16 12 C 0.02 0.65 6.83 24.92 0.17 0.82 16 13 C -0.20 -5.20 10.78 22.10 0.24 -4.96 16 14 C -0.14 -3.32 10.59 22.41 0.24 -3.08 16 15 C 0.00 -0.02 7.24 24.13 0.17 0.15 16 16 C 0.15 4.67 7.40 87.36 0.65 5.31 16 17 N -0.49 -16.69 10.61 -181.27 -1.92 -18.62 16 18 C 0.05 1.25 6.94 39.93 0.28 1.52 16 19 C -0.08 -1.75 10.05 22.52 0.23 -1.53 16 20 C -0.10 -1.17 9.93 21.90 0.22 -0.95 16 21 C -0.08 -0.78 10.05 22.27 0.22 -0.55 16 22 C -0.08 -1.03 10.07 22.41 0.23 -0.80 16 23 C -0.20 -4.16 6.53 22.96 0.15 -4.01 16 24 S 0.16 3.26 23.08 -56.49 -1.30 1.96 16 25 O -0.17 -6.57 10.67 -6.22 -0.07 -6.63 16 26 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 27 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 28 H -0.02 -1.28 8.14 -2.38 -0.02 -1.30 16 29 H 0.34 14.13 8.72 -89.70 -0.78 13.35 16 30 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 32 H 0.19 3.68 8.06 -2.91 -0.02 3.65 16 33 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 37 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -75.61 343.58 0.45 -75.16 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.33 Total: 12.68 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 4.48 Total: -21.24 kcal Atomic # 7 Polarization: -103.65 SS G_CDS: -5.02 Total: -108.67 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.07 Total: -6.63 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.30 Total: 1.96 kcal Total: -75.61 0.45 -75.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037248854.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.418 kcal (2) G-P(sol) polarization free energy of solvation -75.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds