Wall clock time and date at job start Tue Mar 31 2020 10:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47337 * 299.99842 * 3 2 1 6 6 H 1.48503 * 109.46956 * 60.00456 * 3 2 1 7 7 C 1.38812 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00026 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00220 * 174.34598 * 9 7 2 11 11 C 1.39120 * 120.18970 * 353.15297 * 10 9 7 12 12 C 1.37911 * 120.05120 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.43793 * 359.97438 * 12 11 10 14 14 C 1.37810 * 120.38325 * 0.02562 * 13 12 11 15 15 C 1.39672 * 119.93747 * 359.72378 * 14 13 12 16 16 C 1.47429 * 120.21756 * 180.27711 * 15 14 13 17 17 O 1.21604 * 120.00335 * 180.25528 * 16 15 14 18 18 N 1.34780 * 119.99956 * 0.25452 * 16 15 14 19 19 C 1.46497 * 120.00366 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47456 * 180.02562 * 19 18 16 21 21 C 1.38658 * 120.78773 * 269.72057 * 20 19 18 22 22 C 1.38199 * 119.15904 * 179.79783 * 21 20 19 23 23 N 1.31869 * 120.76604 * 0.48542 * 22 21 20 24 24 C 1.31871 * 121.72509 * 359.74190 * 23 22 21 25 25 C 1.38200 * 120.76705 * 0.02562 * 24 23 22 26 26 H 0.97004 * 119.99870 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.96676 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.77946 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.80833 * 179.97438 * 13 12 11 30 30 H 1.08008 * 120.03005 * 180.02562 * 14 13 12 31 31 H 0.97001 * 119.99608 * 359.97438 * 18 16 15 32 32 H 1.08998 * 109.47080 * 300.00111 * 19 18 16 33 33 H 1.09003 * 109.46889 * 59.99363 * 19 18 16 34 34 H 1.07996 * 120.41629 * 359.97438 * 21 20 19 35 35 H 1.07999 * 119.61852 * 180.24902 * 22 21 20 36 36 H 1.08006 * 119.61452 * 180.02562 * 24 23 22 37 37 H 1.07993 * 120.42307 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3963 1.2126 7 6 2.0095 -1.2022 -0.0005 8 1 3.0895 -1.2023 -0.0010 9 16 1.1285 -2.7281 -0.0019 10 6 2.4709 -3.8564 -0.1731 11 6 3.7583 -3.3822 -0.4032 12 6 4.8070 -4.2679 -0.5363 13 6 4.5891 -5.6339 -0.4417 14 6 3.3211 -6.1233 -0.2141 15 6 2.2483 -5.2403 -0.0716 16 6 0.8902 -5.7569 0.1781 17 8 -0.0417 -4.9848 0.2969 18 7 0.6816 -7.0849 0.2748 19 6 -0.6679 -7.5983 0.5224 20 6 -0.6288 -9.1034 0.5870 21 6 -0.8105 -9.8678 -0.5555 22 6 -0.7638 -11.2456 -0.4583 23 7 -0.5592 -11.8333 0.7043 24 6 -0.3871 -11.1384 1.8118 25 6 -0.4161 -9.7569 1.7912 26 1 -0.4850 0.8401 -0.0004 27 1 3.9365 -2.3196 -0.4778 28 1 5.8047 -3.8949 -0.7153 29 1 5.4177 -6.3184 -0.5479 30 1 3.1579 -7.1884 -0.1410 31 1 1.4250 -7.7008 0.1797 32 1 -1.0388 -7.2040 1.4685 33 1 -1.3294 -7.2859 -0.2856 34 1 -0.9833 -9.3924 -1.5097 35 1 -0.9003 -11.8480 -1.3442 36 1 -0.2215 -11.6550 2.7457 37 1 -0.2749 -9.1934 2.7016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045051065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:30 Heat of formation + Delta-G solvation = 28.914853 kcal Electronic energy + Delta-G solvation = -21933.487233 eV Core-core repulsion = 18573.938177 eV Total energy + Delta-G solvation = -3359.549055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51048 -39.43161 -37.52613 -35.24490 -32.78202 -32.56899 -31.48581 -30.55855 -30.30809 -26.90867 -25.85494 -23.73157 -23.29861 -22.19278 -21.77253 -20.20326 -18.42147 -17.42575 -16.67043 -16.64897 -15.96492 -15.83462 -15.52865 -15.14461 -14.71651 -14.45129 -14.15382 -13.93886 -13.85238 -13.73113 -13.02577 -12.87735 -12.86612 -12.56601 -12.01187 -11.70202 -11.62493 -11.24706 -11.23685 -10.94309 -10.35527 -10.20668 -9.81152 -9.77496 -9.64423 -9.52709 -9.43892 -8.90593 -8.76608 -8.37461 -8.10699 -6.57121 -6.49174 -4.19815 0.85330 0.86179 1.48611 1.98348 3.08519 3.10008 3.18612 3.32523 3.40550 3.45454 3.73397 4.03891 4.18392 4.30761 4.43198 4.51753 4.81880 4.86170 4.92158 5.09090 5.22744 5.31908 5.32136 5.35764 5.54320 5.56780 5.63236 5.72317 5.92743 6.08050 6.09232 6.34920 6.40178 6.54985 6.60990 6.81058 6.98926 7.09988 7.41909 7.55758 7.67670 7.79547 8.13784 8.69802 8.97367 10.54175 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.003065 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.367336 B = 9133.955976 C =10102.947298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.083 3.917 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.595 4.595 8 H 0.092 0.908 9 S 0.185 5.815 10 C -0.056 4.056 11 C -0.153 4.153 12 C -0.076 4.076 13 C -0.186 4.186 14 C -0.060 4.060 15 C -0.178 4.178 16 C 0.553 3.447 17 O -0.507 6.507 18 N -0.735 5.735 19 C 0.161 3.839 20 C -0.057 4.057 21 C -0.155 4.155 22 C 0.096 3.904 23 N -0.485 5.485 24 C 0.096 3.904 25 C -0.155 4.155 26 H 0.274 0.726 27 H 0.139 0.861 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.396 0.604 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 -18.043 0.397 18.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.128 4.128 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.742 4.742 8 H 0.109 0.891 9 S 0.449 5.551 10 C -0.176 4.176 11 C -0.178 4.178 12 C -0.098 4.098 13 C -0.211 4.211 14 C -0.081 4.081 15 C -0.193 4.193 16 C 0.343 3.657 17 O -0.384 6.384 18 N -0.391 5.391 19 C 0.038 3.962 20 C -0.065 4.065 21 C -0.175 4.175 22 C -0.061 4.061 23 N -0.194 5.194 24 C -0.061 4.061 25 C -0.175 4.175 26 H 0.084 0.916 27 H 0.157 0.843 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.231 0.769 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.120 -18.103 0.658 18.115 hybrid contribution 2.329 1.757 -0.233 2.927 sum 2.209 -16.345 0.425 16.499 Atomic orbital electron populations 1.69983 1.06242 1.28353 1.44427 1.25106 0.94977 0.99662 0.93035 0.86093 0.79965 0.81252 0.78196 1.19139 1.20210 1.20213 1.24095 0.97040 0.94018 1.59044 0.89067 1.84736 1.02293 0.92966 1.75059 1.23088 1.00770 0.96961 0.96793 1.21448 0.91707 1.00896 1.03743 1.21092 0.98161 0.93360 0.97193 1.20636 0.96321 0.95288 1.08868 1.20885 0.92635 0.97374 0.97166 1.19052 0.92448 0.92650 1.15199 1.18332 0.89076 0.81301 0.76989 1.90796 1.43523 1.55214 1.48841 1.45836 1.09241 1.07331 1.76652 1.20120 0.85732 0.87172 1.03195 1.20432 0.96522 0.96083 0.93490 1.22182 1.00715 0.95257 0.99359 1.22792 0.95266 0.92298 0.95757 1.67681 1.11268 1.41413 0.99065 1.22794 0.95354 0.91150 0.96812 1.22181 1.00528 0.96050 0.98752 0.91551 0.84319 0.86974 0.87061 0.87290 0.76919 0.90208 0.90208 0.84390 0.82618 0.82616 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.47 13.22 55.49 0.73 -23.73 16 2 C 0.08 2.26 5.49 -17.46 -0.10 2.16 16 3 Si 0.92 20.48 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.60 -16.23 9.00 30.94 0.28 -15.95 16 8 H 0.09 2.36 4.98 -52.49 -0.26 2.10 16 9 S 0.18 4.88 18.56 -107.50 -2.00 2.89 16 10 C -0.06 -1.26 6.15 -38.39 -0.24 -1.50 16 11 C -0.15 -3.14 9.22 -39.37 -0.36 -3.51 16 12 C -0.08 -1.27 10.03 -39.55 -0.40 -1.67 16 13 C -0.19 -2.82 10.02 -39.58 -0.40 -3.22 16 14 C -0.06 -0.94 9.53 -39.20 -0.37 -1.31 16 15 C -0.18 -3.43 5.89 -104.75 -0.62 -4.05 16 16 C 0.55 10.33 7.75 -12.52 -0.10 10.23 16 17 O -0.51 -11.47 13.77 5.27 0.07 -11.40 16 18 N -0.74 -9.93 5.50 -62.57 -0.34 -10.28 16 19 C 0.16 1.89 5.85 -5.20 -0.03 1.86 16 20 C -0.06 -0.54 5.29 -104.32 -0.55 -1.10 16 21 C -0.15 -1.35 9.82 -39.44 -0.39 -1.74 16 22 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 23 N -0.49 -4.95 10.36 -13.25 -0.14 -5.08 16 24 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 25 C -0.15 -1.35 9.82 -39.44 -0.39 -1.74 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.14 2.98 5.03 -52.49 -0.26 2.72 16 28 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 30 H 0.11 1.29 6.40 -52.48 -0.34 0.95 16 31 H 0.40 4.43 6.49 -40.82 -0.27 4.17 16 32 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 33 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -32.43 334.27 -9.34 -41.77 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -3.64 Total: 5.57 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -4.05 Total: -20.24 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.25 Total: -39.09 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.07 Total: -11.40 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -2.00 Total: 2.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.43 -9.34 -41.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045051065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.689 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds