Wall clock time and date at job start Tue Mar 31 2020 10:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47337 * 299.99842 * 3 2 1 6 6 H 1.48503 * 109.46956 * 60.00456 * 3 2 1 7 7 C 1.38812 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00026 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.76194 * 100.00220 * 174.34598 * 9 7 2 11 11 C 1.39120 * 120.18970 * 353.15297 * 10 9 7 12 12 C 1.37911 * 120.05120 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.43793 * 359.97438 * 12 11 10 14 14 C 1.37810 * 120.38325 * 0.02562 * 13 12 11 15 15 C 1.39672 * 119.93747 * 359.72378 * 14 13 12 16 16 C 1.47429 * 120.21756 * 180.27711 * 15 14 13 17 17 O 1.21604 * 120.00335 * 180.25528 * 16 15 14 18 18 N 1.34780 * 119.99956 * 0.25452 * 16 15 14 19 19 C 1.46497 * 120.00366 * 180.02562 * 18 16 15 20 20 C 1.50697 * 109.47456 * 180.02562 * 19 18 16 21 21 C 1.38658 * 120.78773 * 269.72057 * 20 19 18 22 22 C 1.38199 * 119.15904 * 179.79783 * 21 20 19 23 23 N 1.31869 * 120.76604 * 0.48542 * 22 21 20 24 24 C 1.31871 * 121.72509 * 359.74190 * 23 22 21 25 25 C 1.38200 * 120.76705 * 0.02562 * 24 23 22 26 26 H 0.97004 * 119.99870 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.96676 * 359.97438 * 11 10 9 28 28 H 1.07997 * 119.77946 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.80833 * 179.97438 * 13 12 11 30 30 H 1.08008 * 120.03005 * 180.02562 * 14 13 12 31 31 H 0.97001 * 119.99608 * 359.97438 * 18 16 15 32 32 H 1.08998 * 109.47080 * 300.00111 * 19 18 16 33 33 H 1.09003 * 109.46889 * 59.99363 * 19 18 16 34 34 H 1.07996 * 120.41629 * 359.97438 * 21 20 19 35 35 H 1.07999 * 119.61852 * 180.24902 * 22 21 20 36 36 H 1.08006 * 119.61452 * 180.02562 * 24 23 22 37 37 H 1.07993 * 120.42307 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3963 1.2126 7 6 2.0095 -1.2022 -0.0005 8 1 3.0895 -1.2023 -0.0010 9 16 1.1285 -2.7281 -0.0019 10 6 2.4709 -3.8564 -0.1731 11 6 3.7583 -3.3822 -0.4032 12 6 4.8070 -4.2679 -0.5363 13 6 4.5891 -5.6339 -0.4417 14 6 3.3211 -6.1233 -0.2141 15 6 2.2483 -5.2403 -0.0716 16 6 0.8902 -5.7569 0.1781 17 8 -0.0417 -4.9848 0.2969 18 7 0.6816 -7.0849 0.2748 19 6 -0.6679 -7.5983 0.5224 20 6 -0.6288 -9.1034 0.5870 21 6 -0.8105 -9.8678 -0.5555 22 6 -0.7638 -11.2456 -0.4583 23 7 -0.5592 -11.8333 0.7043 24 6 -0.3871 -11.1384 1.8118 25 6 -0.4161 -9.7569 1.7912 26 1 -0.4850 0.8401 -0.0004 27 1 3.9365 -2.3196 -0.4778 28 1 5.8047 -3.8949 -0.7153 29 1 5.4177 -6.3184 -0.5479 30 1 3.1579 -7.1884 -0.1410 31 1 1.4250 -7.7008 0.1797 32 1 -1.0388 -7.2040 1.4685 33 1 -1.3294 -7.2859 -0.2856 34 1 -0.9833 -9.3924 -1.5097 35 1 -0.9003 -11.8480 -1.3442 36 1 -0.2215 -11.6550 2.7457 37 1 -0.2749 -9.1934 2.7016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045051065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:29 Heat of formation + Delta-G solvation = 7.601359 kcal Electronic energy + Delta-G solvation = -21934.411455 eV Core-core repulsion = 18573.938177 eV Total energy + Delta-G solvation = -3360.473278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36277 -40.73719 -38.97484 -36.40341 -34.76539 -33.64222 -32.14063 -31.91253 -31.78537 -27.95552 -27.82852 -24.62562 -24.39601 -23.46864 -22.82779 -21.65649 -20.03558 -18.93907 -17.64112 -17.43224 -17.42544 -17.07295 -16.77143 -16.43930 -16.02027 -15.80847 -15.54187 -15.30134 -14.76746 -14.66333 -14.61483 -14.30962 -14.02856 -13.50800 -13.39117 -13.29777 -13.00671 -12.87602 -12.54461 -12.47960 -12.04699 -11.55388 -11.43780 -11.34790 -10.75092 -10.46483 -10.42226 -10.21305 -10.08067 -9.91192 -9.77943 -8.46852 -8.45505 -6.24281 0.02425 0.11700 0.20238 0.53219 1.27087 1.35305 1.45726 1.64801 1.99953 2.16954 2.28716 2.87367 2.92145 3.03499 3.24287 3.45015 3.62198 3.80695 3.92624 4.00696 4.14969 4.20788 4.26519 4.47711 4.56884 4.61070 4.67247 4.74614 4.85578 4.91786 4.97533 5.10331 5.35635 5.36201 5.38353 5.45922 5.56600 5.67295 5.75464 6.09638 6.16066 6.56402 6.96052 7.01463 7.31069 8.60186 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.003065 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.367336 B = 9133.955976 C =10102.947298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 0.993 3.007 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.601 4.601 8 H 0.094 0.906 9 S 0.066 5.934 10 C -0.071 4.071 11 C -0.175 4.175 12 C -0.069 4.069 13 C -0.158 4.158 14 C -0.053 4.053 15 C -0.182 4.182 16 C 0.549 3.451 17 O -0.553 6.553 18 N -0.710 5.710 19 C 0.164 3.836 20 C -0.063 4.063 21 C -0.154 4.154 22 C 0.092 3.908 23 N -0.506 5.506 24 C 0.092 3.908 25 C -0.155 4.155 26 H 0.276 0.724 27 H 0.119 0.881 28 H 0.149 0.851 29 H 0.165 0.835 30 H 0.158 0.842 31 H 0.411 0.589 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.150 0.850 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -21.325 0.148 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.814 3.186 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.748 4.748 8 H 0.112 0.888 9 S 0.325 5.675 10 C -0.190 4.190 11 C -0.200 4.200 12 C -0.090 4.090 13 C -0.181 4.181 14 C -0.073 4.073 15 C -0.195 4.195 16 C 0.338 3.662 17 O -0.433 6.433 18 N -0.364 5.364 19 C 0.041 3.959 20 C -0.072 4.072 21 C -0.175 4.175 22 C -0.064 4.064 23 N -0.216 5.216 24 C -0.064 4.064 25 C -0.175 4.175 26 H 0.085 0.915 27 H 0.137 0.863 28 H 0.167 0.833 29 H 0.182 0.818 30 H 0.175 0.825 31 H 0.249 0.751 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.167 0.833 35 H 0.196 0.804 36 H 0.196 0.804 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.225 -21.514 0.402 21.758 hybrid contribution 1.502 2.320 -0.173 2.769 sum 4.727 -19.194 0.229 19.769 Atomic orbital electron populations 1.70132 1.08002 1.29113 1.46716 1.26138 0.95853 1.03405 0.92731 0.84995 0.78807 0.76380 0.78391 1.18076 1.19489 1.19626 1.24279 0.97067 0.94409 1.59051 0.88802 1.84892 1.06396 0.95391 1.80805 1.22991 0.99730 0.97328 0.98909 1.21459 0.92269 1.00937 1.05364 1.21537 0.98525 0.93823 0.95089 1.21315 0.97478 0.95159 1.04120 1.21410 0.91562 0.99166 0.95173 1.19447 0.94149 0.92025 1.13889 1.18467 0.88535 0.82588 0.76625 1.90799 1.44792 1.56822 1.50878 1.45605 1.10683 1.05686 1.74458 1.20118 0.84415 0.88886 1.02523 1.20228 0.98087 0.94368 0.94499 1.22321 1.00202 0.95394 0.99542 1.23175 0.94565 0.92465 0.96223 1.67731 1.11858 1.42161 0.99818 1.23175 0.94680 0.91165 0.97410 1.22317 1.00047 0.96299 0.98807 0.91516 0.86344 0.83317 0.81772 0.82494 0.75110 0.90969 0.90942 0.83266 0.80379 0.80386 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.15 13.22 21.65 0.29 -54.87 16 2 C 0.02 1.39 5.49 84.87 0.47 1.86 16 3 Si 0.99 43.75 29.55 68.60 2.03 45.78 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.60 -34.94 9.00 67.96 0.61 -34.32 16 8 H 0.09 5.15 4.98 -2.91 -0.01 5.14 16 9 S 0.07 3.79 18.56 -56.49 -1.05 2.74 16 10 C -0.07 -3.30 6.15 23.04 0.14 -3.16 16 11 C -0.18 -7.18 9.22 22.40 0.21 -6.98 16 12 C -0.07 -2.03 10.03 22.29 0.22 -1.81 16 13 C -0.16 -3.78 10.02 22.27 0.22 -3.56 16 14 C -0.05 -1.40 9.53 22.52 0.21 -1.18 16 15 C -0.18 -6.82 5.89 -19.95 -0.12 -6.94 16 16 C 0.55 20.59 7.75 86.66 0.67 21.27 16 17 O -0.55 -26.54 13.77 -4.04 -0.06 -26.60 16 18 N -0.71 -18.03 5.50 -470.11 -2.58 -20.62 16 19 C 0.16 3.74 5.85 85.63 0.50 4.24 16 20 C -0.06 -1.09 5.29 -19.67 -0.10 -1.20 16 21 C -0.15 -2.34 9.82 22.36 0.22 -2.12 16 22 C 0.09 1.37 11.18 84.68 0.95 2.32 16 23 N -0.51 -9.05 10.36 -195.85 -2.03 -11.08 16 24 C 0.09 1.37 11.18 84.68 0.95 2.32 16 25 C -0.15 -2.35 9.82 22.36 0.22 -2.13 16 26 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.12 5.28 5.03 -2.91 -0.01 5.27 16 28 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.16 2.63 6.40 -2.91 -0.02 2.61 16 31 H 0.41 7.72 6.49 -92.71 -0.60 7.12 16 32 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 33 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -78.91 334.27 2.49 -76.42 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.52 Total: 19.62 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 5.37 Total: -31.40 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -4.33 Total: -86.56 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.06 Total: -26.60 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.05 Total: 2.74 kcal Total: -78.91 2.49 -76.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045051065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.025 kcal (2) G-P(sol) polarization free energy of solvation -78.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds