Wall clock time and date at job start Tue Mar 31 2020 10:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42892 * 114.00097 * 2 1 4 4 C 1.53004 * 109.47066 * 184.30188 * 3 2 1 5 5 N 1.46903 * 109.47103 * 64.71954 * 4 3 2 6 6 C 1.46903 * 110.99867 * 195.56953 * 5 4 3 7 7 C 1.50702 * 109.46933 * 72.70742 * 6 5 4 8 8 H 1.07997 * 119.99541 * 245.29111 * 7 6 5 9 9 C 1.37870 * 120.00025 * 65.29336 * 7 6 5 10 10 N 1.31511 * 120.00398 * 8.86224 * 9 7 6 11 11 Si 1.86808 * 119.99587 * 188.86179 * 9 7 6 12 12 H 1.48500 * 109.46955 * 84.98536 * 11 9 7 13 13 H 1.48501 * 109.47046 * 204.98484 * 11 9 7 14 14 H 1.48496 * 109.46979 * 324.98378 * 11 9 7 15 15 C 1.39748 * 110.99821 * 71.61679 * 5 4 3 16 16 C 1.38877 * 120.08085 * 59.72635 * 15 5 4 17 17 C 1.38122 * 119.93864 * 179.72123 * 16 15 5 18 18 C 1.38296 * 120.09169 * 0.53055 * 17 16 15 19 19 N 1.48003 * 119.91859 * 179.74664 * 18 17 16 20 20 O 1.21804 * 119.99710 * 180.02562 * 19 18 17 21 21 O 1.21801 * 120.00156 * 0.02562 * 19 18 17 22 22 C 1.38267 * 120.15763 * 359.76653 * 18 17 16 23 23 C 1.38216 * 120.06119 * 359.95586 * 22 18 17 24 24 Cl 1.73597 * 120.04581 * 179.97438 * 23 22 18 25 25 H 1.08995 * 109.47357 * 304.75415 * 1 2 3 26 26 H 1.09001 * 109.47068 * 64.75746 * 1 2 3 27 27 H 1.09004 * 109.47435 * 184.75516 * 1 2 3 28 28 H 1.09002 * 109.47359 * 64.30465 * 3 2 1 29 29 H 1.08998 * 109.47412 * 304.30364 * 3 2 1 30 30 H 1.08996 * 109.47406 * 304.71744 * 4 3 2 31 31 H 1.08997 * 109.46926 * 184.71829 * 4 3 2 32 32 H 1.08993 * 109.46845 * 312.70245 * 6 5 4 33 33 H 1.08999 * 109.46638 * 192.70379 * 6 5 4 34 34 H 0.97003 * 119.99923 * 180.02562 * 10 9 7 35 35 H 1.08000 * 120.02850 * 359.97438 * 16 15 5 36 36 H 1.08000 * 119.95468 * 180.25463 * 17 16 15 37 37 H 1.07997 * 119.96950 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5318 1.1862 -0.1082 5 7 3.8857 0.5968 -1.4065 6 6 5.2777 0.1274 -1.4096 7 6 5.3891 -1.1196 -0.5707 8 1 5.9736 -1.1090 0.3374 9 6 4.7448 -2.2738 -0.9624 10 7 4.1800 -2.3416 -2.1481 11 14 4.6744 -3.7416 0.1911 12 1 3.5270 -3.5857 1.1209 13 1 4.5041 -4.9860 -0.6011 14 1 5.9360 -3.8196 0.9704 15 6 3.6605 1.5033 -2.4460 16 6 4.3236 2.7235 -2.4614 17 6 4.1032 3.6148 -3.4932 18 6 3.2151 3.2984 -4.5050 19 7 2.9776 4.2587 -5.6059 20 8 2.1954 3.9817 -6.4975 21 8 3.5644 5.3260 -5.6203 22 6 2.5482 2.0873 -4.4903 23 6 2.7682 1.1881 -3.4639 24 17 1.9302 -0.3320 -3.4456 25 1 -0.3634 0.5858 0.8443 26 1 -0.3633 0.4383 -0.9295 27 1 -0.3634 -1.0241 0.0852 28 1 1.7510 1.8186 0.9260 29 1 1.6289 1.8729 -0.8489 30 1 3.9043 0.5489 0.6937 31 1 3.9806 2.1759 -0.0240 32 1 5.9233 0.9022 -0.9964 33 1 5.5841 -0.0939 -2.4319 34 1 3.7264 -3.1537 -2.4235 35 1 5.0140 2.9734 -1.6694 36 1 4.6218 4.5620 -3.5076 37 1 1.8550 1.8435 -5.2818 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071231050.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:31 Heat of formation + Delta-G solvation = -23.171513 kcal Electronic energy + Delta-G solvation = -24724.697672 eV Core-core repulsion = 20917.704262 eV Total energy + Delta-G solvation = -3806.993410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.28401 -41.12169 -38.76987 -37.70720 -37.49795 -37.15414 -34.47822 -32.18991 -32.08008 -30.81340 -28.67406 -27.15830 -26.41758 -24.43990 -24.02883 -23.53192 -21.82215 -20.44473 -19.80396 -18.65480 -18.27600 -17.85493 -17.11614 -16.86252 -16.74843 -16.46290 -16.23007 -15.62262 -15.39776 -15.18125 -14.41904 -14.37431 -14.25142 -13.56375 -13.48365 -13.02197 -12.80529 -12.72636 -12.65659 -12.59467 -12.49688 -12.41539 -12.35651 -12.31117 -11.65464 -11.60595 -11.50720 -11.30728 -10.43786 -10.38199 -10.32466 -9.87348 -8.89666 -7.94922 -6.06091 -1.26128 -0.17670 0.24282 0.26747 1.36224 1.46788 1.52231 1.54270 2.13262 2.54226 2.89055 3.11040 3.38569 3.51840 3.57914 3.81297 3.90335 4.15943 4.29561 4.34608 4.40462 4.52328 4.55475 4.58549 4.65056 4.66573 4.82641 4.86858 4.95247 5.11439 5.15218 5.30231 5.40158 5.80841 6.19071 6.36424 6.50719 6.52384 6.80049 7.03600 7.64476 9.09172 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.016741 B = 0.004955 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.145695 B = 5649.858526 C = 5913.092260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.073 3.927 4 C 0.065 3.935 5 N -0.488 5.488 6 C 0.212 3.788 7 C -0.551 4.551 8 H 0.047 0.953 9 C 0.066 3.934 10 N -0.848 5.848 11 Si 0.926 3.074 12 H -0.284 1.284 13 H -0.292 1.292 14 H -0.275 1.275 15 C 0.170 3.830 16 C -0.147 4.147 17 C -0.030 4.030 18 C -0.063 4.063 19 N 0.039 4.961 20 O -0.192 6.192 21 O -0.159 6.159 22 C -0.051 4.051 23 C -0.036 4.036 24 Cl -0.018 7.018 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.006 0.994 33 H 0.009 0.991 34 H 0.253 0.747 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.858 10.695 1.229 11.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.004 4.004 4 C -0.061 4.061 5 N -0.210 5.210 6 C 0.090 3.910 7 C -0.589 4.589 8 H 0.065 0.935 9 C -0.141 4.141 10 N -0.481 5.481 11 Si 0.754 3.246 12 H -0.210 1.210 13 H -0.219 1.219 14 H -0.200 1.200 15 C 0.074 3.926 16 C -0.168 4.168 17 C -0.050 4.050 18 C -0.147 4.147 19 N 0.554 4.446 20 O -0.401 6.401 21 O -0.377 6.377 22 C -0.071 4.071 23 C -0.065 4.065 24 Cl 0.012 6.988 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.024 0.976 33 H 0.027 0.973 34 H 0.062 0.938 35 H 0.188 0.812 36 H 0.197 0.803 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.118 9.349 1.540 10.769 hybrid contribution -0.083 -0.275 0.167 0.332 sum -5.201 9.074 1.707 10.597 Atomic orbital electron populations 1.22741 0.81417 1.02495 0.99893 1.88143 1.19508 1.27804 1.95175 1.22550 0.93580 0.84798 0.99463 1.22154 0.94139 0.98142 0.91642 1.60178 1.27784 1.32713 1.00349 1.19508 0.81858 0.93468 0.96162 1.20969 1.32867 0.95443 1.09607 0.93454 1.25271 0.94316 0.99458 0.95097 1.70081 1.33091 1.26882 1.18084 0.86114 0.77998 0.80344 0.80104 1.21035 1.21866 1.19970 1.19732 0.89775 0.90396 0.92731 1.22028 1.01465 0.93211 1.00109 1.21166 0.92917 1.01276 0.89618 1.20877 1.08589 0.92322 0.92903 1.43638 0.98417 1.01159 1.01359 1.94535 1.32211 1.82667 1.30709 1.94486 1.48809 1.11423 1.83030 1.20784 0.98219 0.90218 0.97888 1.21004 0.98744 0.90495 0.96241 1.98431 1.75145 1.27259 1.98006 0.92844 0.94667 0.90374 0.91444 0.94765 0.90356 0.91560 0.97634 0.97300 0.93805 0.81193 0.80308 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.39 -14.08 10.65 -148.98 -1.59 -15.67 16 3 C 0.07 2.21 6.07 71.98 0.44 2.65 16 4 C 0.07 2.16 5.09 86.30 0.44 2.60 16 5 N -0.49 -18.90 3.58 -699.46 -2.50 -21.40 16 6 C 0.21 9.35 4.39 85.56 0.38 9.73 16 7 C -0.55 -27.59 8.37 25.60 0.21 -27.38 16 8 H 0.05 2.37 7.83 -2.91 -0.02 2.35 16 9 C 0.07 3.40 5.38 84.65 0.46 3.86 16 10 N -0.85 -44.97 13.11 21.44 0.28 -44.69 16 11 Si 0.93 42.19 29.55 68.60 2.03 44.21 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 15 C 0.17 5.72 3.69 38.21 0.14 5.86 16 16 C -0.15 -3.81 8.59 22.40 0.19 -3.62 16 17 C -0.03 -0.71 9.55 22.26 0.21 -0.50 16 18 C -0.06 -1.76 6.85 36.40 0.25 -1.51 16 19 N 0.04 1.15 4.45 -46.42 -0.21 0.94 16 20 O -0.19 -6.09 18.44 18.88 0.35 -5.74 16 21 O -0.16 -4.63 18.44 18.89 0.35 -4.29 16 22 C -0.05 -1.52 9.33 22.27 0.21 -1.31 16 23 C -0.04 -1.22 6.34 22.45 0.14 -1.08 16 24 Cl -0.02 -0.69 28.35 -2.72 -0.08 -0.76 16 25 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.03 1.01 7.45 -2.39 -0.02 0.99 16 30 H 0.08 2.97 7.21 -2.39 -0.02 2.95 16 31 H 0.07 1.74 6.77 -2.39 -0.02 1.72 16 32 H 0.01 0.22 7.87 -2.39 -0.02 0.20 16 33 H 0.01 0.44 7.92 -2.39 -0.02 0.42 16 34 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 35 H 0.17 3.61 7.27 -2.91 -0.02 3.59 16 36 H 0.18 3.19 7.60 -2.91 -0.02 3.17 16 37 H 0.16 4.50 7.60 -2.91 -0.02 4.47 16 Total: -1.00 -58.40 340.95 4.04 -54.36 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: 1.10 Total: 1.63 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 4.32 Total: -8.59 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -2.43 Total: -65.15 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.89 Total: -25.70 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.76 kcal Total: -58.40 4.04 -54.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231050.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.186 kcal (2) G-P(sol) polarization free energy of solvation -58.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds