Wall clock time and date at job start Tue Mar 31 2020 10:19:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53002 * 109.47336 * 2 1
4 4 N 1.46498 * 109.47445 * 180.02562 * 3 2 1
5 5 C 1.36939 * 119.99728 * 275.06753 * 4 3 2
6 6 H 1.07995 * 119.99906 * 321.49166 * 5 4 3
7 7 C 1.38809 * 119.99904 * 141.49412 * 5 4 3
8 8 N 1.31621 * 119.99877 * 340.72620 * 7 5 4
9 9 Si 1.86798 * 120.00218 * 160.73067 * 7 5 4
10 10 H 1.48504 * 109.47115 * 359.97438 * 9 7 5
11 11 H 1.48502 * 109.47474 * 119.99881 * 9 7 5
12 12 H 1.48502 * 109.47204 * 239.99989 * 9 7 5
13 13 C 1.46497 * 120.00303 * 95.06295 * 4 3 2
14 14 C 1.50707 * 109.46895 * 89.99830 * 13 4 3
15 15 C 1.38161 * 120.02637 * 260.00243 * 14 13 4
16 16 C 1.38338 * 120.04508 * 179.97438 * 15 14 13
17 17 Cl 1.73605 * 119.95991 * 180.02562 * 16 15 14
18 18 C 1.38392 * 120.08565 * 0.02562 * 16 15 14
19 19 C 1.38125 * 120.03931 * 359.97438 * 18 16 15
20 20 N 1.48004 * 120.01809 * 179.74677 * 19 18 16
21 21 O 1.21798 * 120.00057 * 0.02562 * 20 19 18
22 22 O 1.21798 * 120.00159 * 180.02562 * 20 19 18
23 23 C 1.38710 * 120.01640 * 80.02575 * 14 13 4
24 24 O 1.35919 * 120.04266 * 359.97438 * 23 14 13
25 25 H 1.09001 * 109.47347 * 300.00034 * 1 2 3
26 26 H 1.09002 * 109.47433 * 60.00144 * 1 2 3
27 27 H 1.09003 * 109.47069 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.47347 * 239.99966 * 2 1 3
29 29 H 1.09002 * 109.47433 * 119.99856 * 2 1 3
30 30 H 1.09001 * 109.46931 * 59.99711 * 3 2 1
31 31 H 1.09002 * 109.46742 * 300.00280 * 3 2 1
32 32 H 0.97003 * 120.00122 * 180.02562 * 8 7 5
33 33 H 1.09005 * 109.47210 * 330.00509 * 13 4 3
34 34 H 1.08993 * 109.47527 * 210.00265 * 13 4 3
35 35 H 1.07999 * 119.97389 * 0.02562 * 15 14 13
36 36 H 1.07997 * 119.98268 * 180.02562 * 18 16 15
37 37 H 0.96698 * 114.00311 * 269.99933 * 24 23 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4425 -0.0006
5 6 4.1901 1.3376 1.1804
6 1 3.8266 1.8439 2.0623
7 6 5.3519 0.5806 1.2439
8 7 5.5981 -0.3256 0.3216
9 14 6.5658 0.8477 2.6384
10 1 6.0600 1.9163 3.5370
11 1 6.7221 -0.4133 3.4070
12 1 7.8805 1.2529 2.0793
13 6 4.2370 1.5547 -1.2646
14 6 4.4880 3.0085 -1.5724
15 6 3.6805 3.6735 -2.4750
16 6 3.9102 5.0081 -2.7575
17 17 2.8939 5.8417 -3.8915
18 6 4.9492 5.6796 -2.1372
19 6 5.7586 5.0182 -1.2342
20 7 6.8731 5.7354 -0.5754
21 8 7.0765 6.9092 -0.8289
22 8 7.5870 5.1518 0.2204
23 6 5.5302 3.6797 -0.9500
24 8 6.3256 3.0272 -0.0618
25 1 -0.3634 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 1.8933 -0.5138 -0.8900
29 1 1.8933 -0.5138 0.8900
30 1 1.6766 1.9563 0.8900
31 1 1.6766 1.9563 -0.8900
32 1 6.4097 -0.8549 0.3662
33 1 3.6476 1.1101 -2.0666
34 1 5.1894 1.0314 -1.1807
35 1 2.8690 3.1512 -2.9598
36 1 5.1268 6.7216 -2.3586
37 1 6.0133 3.0715 0.8523
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000092398193.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:19:28
Heat of formation + Delta-G solvation = -13.558029 kcal
Electronic energy + Delta-G solvation = -24814.395397 eV
Core-core repulsion = 21007.818859 eV
Total energy + Delta-G solvation = -3806.576538 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.087 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.87782 -39.76994 -37.22248 -36.35910 -36.21304 -35.78688 -33.18720 -32.29653
-30.79091 -29.80728 -26.32731 -26.12897 -25.74315 -22.78357 -22.27005 -21.35287
-20.13533 -18.81788 -18.35960 -17.95914 -17.19833 -16.89987 -16.12354 -15.83594
-15.00397 -14.87809 -14.40008 -13.95828 -13.86076 -13.34070 -13.21759 -12.92200
-12.71891 -12.29554 -11.67795 -11.56624 -11.42330 -11.29073 -11.22241 -11.13410
-11.03491 -10.93978 -10.79641 -10.74351 -10.52612 -10.25523 -10.21082 -10.13988
-9.86473 -9.26949 -8.76401 -8.53737 -6.91026 -6.10747 -3.68307 0.08010
0.96816 1.54831 1.60404 2.06717 3.17875 3.30568 3.32928 3.38563
4.19283 4.25085 4.66466 4.79888 4.97308 5.08863 5.16665 5.26064
5.61833 5.64740 5.65673 5.72696 5.96211 5.96781 5.99051 6.09986
6.34677 6.38526 6.45055 6.54269 6.61625 6.71730 6.90334 7.10309
7.32093 7.54726 7.94156 7.99669 8.22170 8.85686 9.46099 10.05080
10.89856
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.010293 B = 0.006900 C = 0.004408
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2719.730082 B = 4056.935891 C = 6350.674474
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.137 4.137
3 C 0.147 3.853
4 N -0.573 5.573
5 C -0.285 4.285
6 H 0.066 0.934
7 C 0.034 3.966
8 N -0.865 5.865
9 Si 0.878 3.122
10 H -0.272 1.272
11 H -0.285 1.285
12 H -0.271 1.271
13 C 0.176 3.824
14 C -0.091 4.091
15 C -0.060 4.060
16 C -0.048 4.048
17 Cl -0.059 7.059
18 C -0.063 4.063
19 C -0.079 4.079
20 N 0.039 4.961
21 O -0.189 6.189
22 O -0.140 6.140
23 C 0.218 3.782
24 O -0.457 6.457
25 H 0.047 0.953
26 H 0.044 0.956
27 H 0.043 0.957
28 H 0.052 0.948
29 H 0.064 0.936
30 H 0.041 0.959
31 H 0.035 0.965
32 H 0.261 0.739
33 H 0.047 0.953
34 H 0.121 0.879
35 H 0.145 0.855
36 H 0.155 0.845
37 H 0.407 0.593
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.826 6.395 -5.821 10.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.177 4.177
3 C 0.021 3.979
4 N -0.291 5.291
5 C -0.413 4.413
6 H 0.083 0.917
7 C -0.170 4.170
8 N -0.503 5.503
9 Si 0.705 3.295
10 H -0.196 1.196
11 H -0.212 1.212
12 H -0.196 1.196
13 C 0.049 3.951
14 C -0.096 4.096
15 C -0.081 4.081
16 C -0.076 4.076
17 Cl -0.030 7.030
18 C -0.083 4.083
19 C -0.164 4.164
20 N 0.556 4.444
21 O -0.397 6.397
22 O -0.360 6.360
23 C 0.169 3.831
24 O -0.272 6.272
25 H 0.066 0.934
26 H 0.063 0.937
27 H 0.062 0.938
28 H 0.071 0.929
29 H 0.083 0.917
30 H 0.059 0.941
31 H 0.053 0.947
32 H 0.072 0.928
33 H 0.065 0.935
34 H 0.138 0.862
35 H 0.163 0.837
36 H 0.172 0.828
37 H 0.272 0.728
Dipole moment (debyes) X Y Z Total
from point charges -5.991 5.863 -6.686 10.722
hybrid contribution 0.554 0.469 1.147 1.357
sum -5.437 6.332 -5.539 10.017
Atomic orbital electron populations
1.21762 0.97701 1.00467 1.00687 1.22011 0.93014 1.00276 1.02363
1.21005 0.84709 0.93883 0.98300 1.43807 0.99532 1.82947 1.02772
1.19141 1.07029 1.26035 0.89140 0.91679 1.25229 1.00342 0.94193
0.97212 1.69868 1.25871 1.19660 1.34922 0.86655 0.82376 0.78464
0.81968 1.19645 1.21161 1.19588 1.20128 1.01781 0.85326 0.87816
1.21933 0.91057 1.02792 0.93801 1.21284 0.99179 0.91657 0.95964
1.20529 0.95657 0.93415 0.97956 1.98370 1.67159 1.78247 1.59250
1.20420 0.92578 1.01230 0.94119 1.21552 0.95591 0.93026 1.06272
1.43357 1.00966 1.00606 0.99514 1.94479 1.76652 1.00100 1.68439
1.94594 1.43962 1.68906 1.28545 1.18202 0.88155 0.85488 0.91276
1.84765 1.47881 1.73695 1.20881 0.93428 0.93672 0.93754 0.92877
0.91689 0.94094 0.94685 0.92831 0.93506 0.86218 0.83688 0.82775
0.72815
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16
2 C -0.14 -2.38 6.23 -26.73 -0.17 -2.55 16
3 C 0.15 2.64 5.67 -4.04 -0.02 2.62 16
4 N -0.57 -11.88 2.41 -174.61 -0.42 -12.30 16
5 C -0.28 -6.55 7.94 -15.06 -0.12 -6.67 16
6 H 0.07 1.53 7.90 -52.49 -0.41 1.12 16
7 C 0.03 0.82 3.83 -17.43 -0.07 0.75 16
8 N -0.86 -21.75 11.40 55.49 0.63 -21.12 16
9 Si 0.88 19.16 27.93 -169.99 -4.75 14.41 16
10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16
11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16
12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16
13 C 0.18 3.47 5.07 -5.19 -0.03 3.44 16
14 C -0.09 -1.58 5.48 -104.47 -0.57 -2.15 16
15 C -0.06 -0.87 9.45 -39.57 -0.37 -1.24 16
16 C -0.05 -0.66 6.32 -39.49 -0.25 -0.91 16
17 Cl -0.06 -0.69 28.95 -51.86 -1.50 -2.19 16
18 C -0.06 -0.93 9.33 -39.57 -0.37 -1.30 16
19 C -0.08 -1.38 6.86 -79.81 -0.55 -1.93 16
20 N 0.04 0.73 4.45 34.03 0.15 0.88 16
21 O -0.19 -3.45 18.45 -29.46 -0.54 -3.99 16
22 O -0.14 -2.82 17.24 -36.49 -0.63 -3.45 16
23 C 0.22 4.06 6.66 -39.22 -0.26 3.80 16
24 O -0.46 -9.43 9.15 -41.61 -0.38 -9.81 16
25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16
26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16
30 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16
31 H 0.03 0.56 8.03 -51.93 -0.42 0.15 16
32 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16
33 H 0.05 0.85 7.93 -51.93 -0.41 0.44 16
34 H 0.12 2.77 5.21 -51.93 -0.27 2.50 16
35 H 0.15 1.79 8.04 -52.49 -0.42 1.37 16
36 H 0.15 2.03 7.61 -52.49 -0.40 1.63 16
37 H 0.41 8.27 5.95 45.56 0.27 8.55 16
LS Contribution 331.85 15.07 5.00 5.00
Total: -1.00 -24.73 331.85 -8.58 -33.31
By element:
Atomic # 1 Polarization: 10.79 SS G_CDS: -3.73 Total: 7.06 kcal
Atomic # 6 Polarization: -5.40 SS G_CDS: -2.41 Total: -7.81 kcal
Atomic # 7 Polarization: -32.90 SS G_CDS: 0.36 Total: -32.54 kcal
Atomic # 8 Polarization: -15.69 SS G_CDS: -1.55 Total: -17.25 kcal
Atomic # 14 Polarization: 19.16 SS G_CDS: -4.75 Total: 14.41 kcal
Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal
Total LS contribution 5.00 Total: 5.00 kcal
Total: -24.73 -8.58 -33.31 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000092398193.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.756 kcal
(2) G-P(sol) polarization free energy of solvation -24.735 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.979 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.314 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds