Wall clock time and date at job start Tue Mar 31 2020 10:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47336 * 2 1 4 4 N 1.46498 * 109.47445 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99728 * 275.06753 * 4 3 2 6 6 H 1.07995 * 119.99906 * 321.49166 * 5 4 3 7 7 C 1.38809 * 119.99904 * 141.49412 * 5 4 3 8 8 N 1.31621 * 119.99877 * 340.72620 * 7 5 4 9 9 Si 1.86798 * 120.00218 * 160.73067 * 7 5 4 10 10 H 1.48504 * 109.47115 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47474 * 119.99881 * 9 7 5 12 12 H 1.48502 * 109.47204 * 239.99989 * 9 7 5 13 13 C 1.46497 * 120.00303 * 95.06295 * 4 3 2 14 14 C 1.50707 * 109.46895 * 89.99830 * 13 4 3 15 15 C 1.38161 * 120.02637 * 260.00243 * 14 13 4 16 16 C 1.38338 * 120.04508 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 119.95991 * 180.02562 * 16 15 14 18 18 C 1.38392 * 120.08565 * 0.02562 * 16 15 14 19 19 C 1.38125 * 120.03931 * 359.97438 * 18 16 15 20 20 N 1.48004 * 120.01809 * 179.74677 * 19 18 16 21 21 O 1.21798 * 120.00057 * 0.02562 * 20 19 18 22 22 O 1.21798 * 120.00159 * 180.02562 * 20 19 18 23 23 C 1.38710 * 120.01640 * 80.02575 * 14 13 4 24 24 O 1.35919 * 120.04266 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.47347 * 300.00034 * 1 2 3 26 26 H 1.09002 * 109.47433 * 60.00144 * 1 2 3 27 27 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47347 * 239.99966 * 2 1 3 29 29 H 1.09002 * 109.47433 * 119.99856 * 2 1 3 30 30 H 1.09001 * 109.46931 * 59.99711 * 3 2 1 31 31 H 1.09002 * 109.46742 * 300.00280 * 3 2 1 32 32 H 0.97003 * 120.00122 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47210 * 330.00509 * 13 4 3 34 34 H 1.08993 * 109.47527 * 210.00265 * 13 4 3 35 35 H 1.07999 * 119.97389 * 0.02562 * 15 14 13 36 36 H 1.07997 * 119.98268 * 180.02562 * 18 16 15 37 37 H 0.96698 * 114.00311 * 269.99933 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3376 1.1804 6 1 3.8266 1.8439 2.0623 7 6 5.3519 0.5806 1.2439 8 7 5.5981 -0.3256 0.3216 9 14 6.5658 0.8477 2.6384 10 1 6.0600 1.9163 3.5370 11 1 6.7221 -0.4133 3.4070 12 1 7.8805 1.2529 2.0793 13 6 4.2370 1.5547 -1.2646 14 6 4.4880 3.0085 -1.5724 15 6 3.6805 3.6735 -2.4750 16 6 3.9102 5.0081 -2.7575 17 17 2.8939 5.8417 -3.8915 18 6 4.9492 5.6796 -2.1372 19 6 5.7586 5.0182 -1.2342 20 7 6.8731 5.7354 -0.5754 21 8 7.0765 6.9092 -0.8289 22 8 7.5870 5.1518 0.2204 23 6 5.5302 3.6797 -0.9500 24 8 6.3256 3.0272 -0.0618 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 6.4097 -0.8549 0.3662 33 1 3.6476 1.1101 -2.0666 34 1 5.1894 1.0314 -1.1807 35 1 2.8690 3.1512 -2.9598 36 1 5.1268 6.7216 -2.3586 37 1 6.0133 3.0715 0.8523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:28 Heat of formation + Delta-G solvation = -13.558029 kcal Electronic energy + Delta-G solvation = -24814.395397 eV Core-core repulsion = 21007.818859 eV Total energy + Delta-G solvation = -3806.576538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.87782 -39.76994 -37.22248 -36.35910 -36.21304 -35.78688 -33.18720 -32.29653 -30.79091 -29.80728 -26.32731 -26.12897 -25.74315 -22.78357 -22.27005 -21.35287 -20.13533 -18.81788 -18.35960 -17.95914 -17.19833 -16.89987 -16.12354 -15.83594 -15.00397 -14.87809 -14.40008 -13.95828 -13.86076 -13.34070 -13.21759 -12.92200 -12.71891 -12.29554 -11.67795 -11.56624 -11.42330 -11.29073 -11.22241 -11.13410 -11.03491 -10.93978 -10.79641 -10.74351 -10.52612 -10.25523 -10.21082 -10.13988 -9.86473 -9.26949 -8.76401 -8.53737 -6.91026 -6.10747 -3.68307 0.08010 0.96816 1.54831 1.60404 2.06717 3.17875 3.30568 3.32928 3.38563 4.19283 4.25085 4.66466 4.79888 4.97308 5.08863 5.16665 5.26064 5.61833 5.64740 5.65673 5.72696 5.96211 5.96781 5.99051 6.09986 6.34677 6.38526 6.45055 6.54269 6.61625 6.71730 6.90334 7.10309 7.32093 7.54726 7.94156 7.99669 8.22170 8.85686 9.46099 10.05080 10.89856 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.010293 B = 0.006900 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.730082 B = 4056.935891 C = 6350.674474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C 0.147 3.853 4 N -0.573 5.573 5 C -0.285 4.285 6 H 0.066 0.934 7 C 0.034 3.966 8 N -0.865 5.865 9 Si 0.878 3.122 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.176 3.824 14 C -0.091 4.091 15 C -0.060 4.060 16 C -0.048 4.048 17 Cl -0.059 7.059 18 C -0.063 4.063 19 C -0.079 4.079 20 N 0.039 4.961 21 O -0.189 6.189 22 O -0.140 6.140 23 C 0.218 3.782 24 O -0.457 6.457 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.261 0.739 33 H 0.047 0.953 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 6.395 -5.821 10.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.021 3.979 4 N -0.291 5.291 5 C -0.413 4.413 6 H 0.083 0.917 7 C -0.170 4.170 8 N -0.503 5.503 9 Si 0.705 3.295 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.196 1.196 13 C 0.049 3.951 14 C -0.096 4.096 15 C -0.081 4.081 16 C -0.076 4.076 17 Cl -0.030 7.030 18 C -0.083 4.083 19 C -0.164 4.164 20 N 0.556 4.444 21 O -0.397 6.397 22 O -0.360 6.360 23 C 0.169 3.831 24 O -0.272 6.272 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.138 0.862 35 H 0.163 0.837 36 H 0.172 0.828 37 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.991 5.863 -6.686 10.722 hybrid contribution 0.554 0.469 1.147 1.357 sum -5.437 6.332 -5.539 10.017 Atomic orbital electron populations 1.21762 0.97701 1.00467 1.00687 1.22011 0.93014 1.00276 1.02363 1.21005 0.84709 0.93883 0.98300 1.43807 0.99532 1.82947 1.02772 1.19141 1.07029 1.26035 0.89140 0.91679 1.25229 1.00342 0.94193 0.97212 1.69868 1.25871 1.19660 1.34922 0.86655 0.82376 0.78464 0.81968 1.19645 1.21161 1.19588 1.20128 1.01781 0.85326 0.87816 1.21933 0.91057 1.02792 0.93801 1.21284 0.99179 0.91657 0.95964 1.20529 0.95657 0.93415 0.97956 1.98370 1.67159 1.78247 1.59250 1.20420 0.92578 1.01230 0.94119 1.21552 0.95591 0.93026 1.06272 1.43357 1.00966 1.00606 0.99514 1.94479 1.76652 1.00100 1.68439 1.94594 1.43962 1.68906 1.28545 1.18202 0.88155 0.85488 0.91276 1.84765 1.47881 1.73695 1.20881 0.93428 0.93672 0.93754 0.92877 0.91689 0.94094 0.94685 0.92831 0.93506 0.86218 0.83688 0.82775 0.72815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.14 -2.38 6.23 -26.73 -0.17 -2.55 16 3 C 0.15 2.64 5.67 -4.04 -0.02 2.62 16 4 N -0.57 -11.88 2.41 -174.61 -0.42 -12.30 16 5 C -0.28 -6.55 7.94 -15.06 -0.12 -6.67 16 6 H 0.07 1.53 7.90 -52.49 -0.41 1.12 16 7 C 0.03 0.82 3.83 -17.43 -0.07 0.75 16 8 N -0.86 -21.75 11.40 55.49 0.63 -21.12 16 9 Si 0.88 19.16 27.93 -169.99 -4.75 14.41 16 10 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.18 3.47 5.07 -5.19 -0.03 3.44 16 14 C -0.09 -1.58 5.48 -104.47 -0.57 -2.15 16 15 C -0.06 -0.87 9.45 -39.57 -0.37 -1.24 16 16 C -0.05 -0.66 6.32 -39.49 -0.25 -0.91 16 17 Cl -0.06 -0.69 28.95 -51.86 -1.50 -2.19 16 18 C -0.06 -0.93 9.33 -39.57 -0.37 -1.30 16 19 C -0.08 -1.38 6.86 -79.81 -0.55 -1.93 16 20 N 0.04 0.73 4.45 34.03 0.15 0.88 16 21 O -0.19 -3.45 18.45 -29.46 -0.54 -3.99 16 22 O -0.14 -2.82 17.24 -36.49 -0.63 -3.45 16 23 C 0.22 4.06 6.66 -39.22 -0.26 3.80 16 24 O -0.46 -9.43 9.15 -41.61 -0.38 -9.81 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.03 0.56 8.03 -51.93 -0.42 0.15 16 32 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 33 H 0.05 0.85 7.93 -51.93 -0.41 0.44 16 34 H 0.12 2.77 5.21 -51.93 -0.27 2.50 16 35 H 0.15 1.79 8.04 -52.49 -0.42 1.37 16 36 H 0.15 2.03 7.61 -52.49 -0.40 1.63 16 37 H 0.41 8.27 5.95 45.56 0.27 8.55 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -24.73 331.85 -8.58 -33.31 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -3.73 Total: 7.06 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -2.41 Total: -7.81 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.36 Total: -32.54 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -1.55 Total: -17.25 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.75 Total: 14.41 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -24.73 -8.58 -33.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.756 kcal (2) G-P(sol) polarization free energy of solvation -24.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds