Wall clock time and date at job start Tue Mar 31 2020 10:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47336 * 2 1 4 4 N 1.46498 * 109.47445 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99728 * 275.06753 * 4 3 2 6 6 H 1.07995 * 119.99906 * 321.49166 * 5 4 3 7 7 C 1.38809 * 119.99904 * 141.49412 * 5 4 3 8 8 N 1.31621 * 119.99877 * 340.72620 * 7 5 4 9 9 Si 1.86798 * 120.00218 * 160.73067 * 7 5 4 10 10 H 1.48504 * 109.47115 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47474 * 119.99881 * 9 7 5 12 12 H 1.48502 * 109.47204 * 239.99989 * 9 7 5 13 13 C 1.46497 * 120.00303 * 95.06295 * 4 3 2 14 14 C 1.50707 * 109.46895 * 89.99830 * 13 4 3 15 15 C 1.38161 * 120.02637 * 260.00243 * 14 13 4 16 16 C 1.38338 * 120.04508 * 179.97438 * 15 14 13 17 17 Cl 1.73605 * 119.95991 * 180.02562 * 16 15 14 18 18 C 1.38392 * 120.08565 * 0.02562 * 16 15 14 19 19 C 1.38125 * 120.03931 * 359.97438 * 18 16 15 20 20 N 1.48004 * 120.01809 * 179.74677 * 19 18 16 21 21 O 1.21798 * 120.00057 * 0.02562 * 20 19 18 22 22 O 1.21798 * 120.00159 * 180.02562 * 20 19 18 23 23 C 1.38710 * 120.01640 * 80.02575 * 14 13 4 24 24 O 1.35919 * 120.04266 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.47347 * 300.00034 * 1 2 3 26 26 H 1.09002 * 109.47433 * 60.00144 * 1 2 3 27 27 H 1.09003 * 109.47069 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47347 * 239.99966 * 2 1 3 29 29 H 1.09002 * 109.47433 * 119.99856 * 2 1 3 30 30 H 1.09001 * 109.46931 * 59.99711 * 3 2 1 31 31 H 1.09002 * 109.46742 * 300.00280 * 3 2 1 32 32 H 0.97003 * 120.00122 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47210 * 330.00509 * 13 4 3 34 34 H 1.08993 * 109.47527 * 210.00265 * 13 4 3 35 35 H 1.07999 * 119.97389 * 0.02562 * 15 14 13 36 36 H 1.07997 * 119.98268 * 180.02562 * 18 16 15 37 37 H 0.96698 * 114.00311 * 269.99933 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3376 1.1804 6 1 3.8266 1.8439 2.0623 7 6 5.3519 0.5806 1.2439 8 7 5.5981 -0.3256 0.3216 9 14 6.5658 0.8477 2.6384 10 1 6.0600 1.9163 3.5370 11 1 6.7221 -0.4133 3.4070 12 1 7.8805 1.2529 2.0793 13 6 4.2370 1.5547 -1.2646 14 6 4.4880 3.0085 -1.5724 15 6 3.6805 3.6735 -2.4750 16 6 3.9102 5.0081 -2.7575 17 17 2.8939 5.8417 -3.8915 18 6 4.9492 5.6796 -2.1372 19 6 5.7586 5.0182 -1.2342 20 7 6.8731 5.7354 -0.5754 21 8 7.0765 6.9092 -0.8289 22 8 7.5870 5.1518 0.2204 23 6 5.5302 3.6797 -0.9500 24 8 6.3256 3.0272 -0.0618 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 6.4097 -0.8549 0.3662 33 1 3.6476 1.1101 -2.0666 34 1 5.1894 1.0314 -1.1807 35 1 2.8690 3.1512 -2.9598 36 1 5.1268 6.7216 -2.3586 37 1 6.0133 3.0715 0.8523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398193.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:28 Heat of formation + Delta-G solvation = -24.715389 kcal Electronic energy + Delta-G solvation = -24814.879216 eV Core-core repulsion = 21007.818859 eV Total energy + Delta-G solvation = -3807.060358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.33135 -41.14743 -38.50536 -37.86254 -37.58857 -37.13280 -34.62465 -33.82977 -32.26354 -31.19063 -27.69287 -27.63576 -27.29615 -24.24409 -23.62709 -22.75417 -21.60005 -20.26086 -19.83478 -19.36412 -18.65391 -18.57402 -17.50415 -17.10981 -16.66264 -16.29147 -15.83673 -15.50154 -15.30012 -14.80297 -14.49480 -14.20296 -13.94787 -13.66559 -13.22368 -13.06166 -12.78136 -12.72703 -12.63965 -12.56168 -12.51168 -12.30250 -12.27140 -12.16991 -12.04846 -11.83296 -11.78934 -11.63103 -11.29427 -10.58527 -10.52372 -9.83231 -8.60960 -7.88886 -5.49316 -1.30566 -0.31358 0.18708 0.22625 0.89059 1.41540 1.51744 1.57174 1.98884 2.46897 2.84067 3.21146 3.40473 3.61000 3.70004 3.75245 3.84261 4.30192 4.32960 4.37725 4.50231 4.56847 4.70767 4.72757 4.85872 4.99832 5.02003 5.13387 5.23889 5.29119 5.32506 5.51339 5.62724 5.64259 5.80823 6.41296 6.47644 6.49758 7.13562 7.79966 8.33162 9.08543 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.010293 B = 0.006900 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.730082 B = 4056.935891 C = 6350.674474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.145 3.855 4 N -0.586 5.586 5 C -0.277 4.277 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.895 5.895 9 Si 0.916 3.084 10 H -0.263 1.263 11 H -0.295 1.295 12 H -0.286 1.286 13 C 0.183 3.817 14 C -0.101 4.101 15 C -0.033 4.033 16 C -0.040 4.040 17 Cl -0.026 7.026 18 C -0.046 4.046 19 C -0.087 4.087 20 N 0.039 4.961 21 O -0.157 6.157 22 O -0.193 6.193 23 C 0.192 3.808 24 O -0.474 6.474 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.252 0.748 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.176 0.824 36 H 0.178 0.822 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.300 8.630 -7.911 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.020 3.980 4 N -0.305 5.305 5 C -0.406 4.406 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.536 5.536 9 Si 0.745 3.255 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.212 1.212 13 C 0.056 3.944 14 C -0.106 4.106 15 C -0.053 4.053 16 C -0.068 4.068 17 Cl 0.003 6.997 18 C -0.066 4.066 19 C -0.172 4.172 20 N 0.553 4.447 21 O -0.376 6.376 22 O -0.400 6.400 23 C 0.143 3.857 24 O -0.289 6.289 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.193 0.807 36 H 0.195 0.805 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -8.448 8.043 -8.730 14.570 hybrid contribution 1.190 0.048 1.559 1.962 sum -7.258 8.091 -7.171 13.022 Atomic orbital electron populations 1.21671 0.94526 1.01483 1.01973 1.21888 0.95739 0.99355 0.99953 1.21115 0.83143 0.94333 0.99388 1.43933 1.00675 1.83638 1.02297 1.19128 1.06835 1.24796 0.89889 0.92590 1.25487 1.01388 0.94467 0.98090 1.69962 1.25926 1.21250 1.36462 0.86053 0.80851 0.77826 0.80793 1.18750 1.22254 1.21207 1.19843 1.00201 0.86585 0.87768 1.21642 0.91935 1.01535 0.95456 1.21549 0.98159 0.91866 0.93733 1.20531 0.95348 0.93185 0.97739 1.98398 1.65968 1.77504 1.57811 1.20748 0.91467 1.02088 0.92257 1.21632 0.95732 0.92799 1.07024 1.43557 1.01191 1.00608 0.99304 1.94434 1.76000 1.00028 1.67090 1.94622 1.45592 1.69280 1.30525 1.18444 0.89074 0.86302 0.91863 1.84756 1.48839 1.74386 1.20924 0.92788 0.91649 0.92961 0.94180 0.95222 0.94377 0.91970 0.93802 0.92095 0.89807 0.80701 0.80489 0.73522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.13 -4.41 6.23 30.59 0.19 -4.22 16 3 C 0.15 5.02 5.67 86.38 0.49 5.51 16 4 N -0.59 -24.32 2.41 -706.34 -1.70 -26.02 16 5 C -0.28 -13.06 7.94 84.03 0.67 -12.39 16 6 H 0.06 2.70 7.90 -2.91 -0.02 2.68 16 7 C 0.01 0.32 3.83 84.86 0.33 0.65 16 8 N -0.89 -47.17 11.40 21.65 0.25 -46.92 16 9 Si 0.92 41.35 27.93 68.60 1.92 43.27 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 11 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 C 0.18 7.15 5.07 85.64 0.43 7.58 16 14 C -0.10 -3.38 5.48 -19.77 -0.11 -3.49 16 15 C -0.03 -0.84 9.45 22.28 0.21 -0.63 16 16 C -0.04 -0.93 6.32 22.33 0.14 -0.79 16 17 Cl -0.03 -0.47 28.95 -2.72 -0.08 -0.55 16 18 C -0.05 -1.18 9.33 22.28 0.21 -0.97 16 19 C -0.09 -2.91 6.86 36.47 0.25 -2.66 16 20 N 0.04 1.43 4.45 -46.25 -0.21 1.22 16 21 O -0.16 -5.40 18.45 18.89 0.35 -5.05 16 22 O -0.19 -7.99 17.24 25.61 0.44 -7.55 16 23 C 0.19 7.12 6.66 22.50 0.15 7.26 16 24 O -0.47 -20.44 9.15 -71.48 -0.65 -21.10 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.33 8.08 -2.39 -0.02 1.31 16 31 H 0.06 1.80 8.03 -2.39 -0.02 1.78 16 32 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 33 H 0.06 2.14 7.93 -2.38 -0.02 2.12 16 34 H 0.08 4.01 5.21 -2.39 -0.01 3.99 16 35 H 0.18 3.38 8.04 -2.91 -0.02 3.36 16 36 H 0.18 3.82 7.61 -2.91 -0.02 3.80 16 37 H 0.40 17.29 5.95 -74.06 -0.44 16.85 16 Total: -1.00 -55.73 331.85 4.66 -51.07 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.67 Total: 18.53 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 3.67 Total: -6.90 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -1.66 Total: -71.72 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: 0.14 Total: -33.70 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.92 Total: 43.27 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -55.73 4.66 -51.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398193.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.356 kcal (2) G-P(sol) polarization free energy of solvation -55.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds