Wall clock time and date at job start Tue Mar 31 2020 10:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.36633 * 125.45332 * 148.01971 * 3 2 1 5 5 C 1.37613 * 113.26576 * 179.97438 * 4 3 2 6 6 C 1.33720 * 115.09469 * 359.97438 * 5 4 3 7 7 C 1.50700 * 124.50544 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47424 * 90.00769 * 7 6 5 9 9 C 1.46898 * 111.00248 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.38299 * 119.93062 * 269.73127 * 10 9 8 12 12 C 1.38104 * 120.06808 * 179.72620 * 11 10 9 13 13 C 1.38884 * 119.92949 * 0.56361 * 12 11 10 14 14 O 1.35747 * 120.06670 * 179.68424 * 13 12 11 15 15 C 1.34830 * 116.99703 * 174.48844 * 14 13 12 16 16 H 1.08000 * 120.00274 * 5.05760 * 15 14 13 17 17 C 1.38659 * 119.99992 * 185.05449 * 15 14 13 18 18 N 1.31550 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99925 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47145 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46735 * 119.99940 * 19 17 15 22 22 H 1.48499 * 109.47152 * 240.00179 * 19 17 15 23 23 C 1.38875 * 119.85840 * 359.70732 * 13 12 11 24 24 C 1.38094 * 119.93651 * 0.02562 * 23 13 12 25 25 S 1.70613 * 110.97925 * 0.27183 * 6 5 4 26 26 H 1.07997 * 123.36651 * 359.96506 * 4 3 2 27 27 H 1.07999 * 122.45061 * 180.02562 * 5 4 3 28 28 H 1.08994 * 109.47406 * 329.99897 * 7 6 5 29 29 H 1.09008 * 109.46834 * 210.00228 * 7 6 5 30 30 H 1.00902 * 110.99774 * 56.03492 * 8 7 6 31 31 H 1.09000 * 109.46988 * 59.99865 * 9 8 7 32 32 H 1.08994 * 109.47006 * 300.00220 * 9 8 7 33 33 H 1.07995 * 119.96585 * 359.97438 * 11 10 9 34 34 H 1.08003 * 120.03457 * 180.27214 * 12 11 10 35 35 H 0.97003 * 120.00129 * 180.02562 * 18 17 15 36 36 H 1.08008 * 120.03256 * 179.97438 * 23 13 12 37 37 H 1.07995 * 119.96949 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3601 0.9451 -0.5895 5 6 4.7053 0.6995 -0.4351 6 6 5.0045 -0.4054 0.2560 7 6 6.4059 -0.8746 0.5509 8 7 6.8600 -0.2930 1.8212 9 6 8.2253 -0.7299 2.1421 10 6 8.6558 -0.1141 3.4484 11 6 9.2992 1.1101 3.4552 12 6 9.6899 1.6798 4.6511 13 6 9.4466 1.0165 5.8468 14 8 9.8352 1.5709 7.0233 15 6 9.4682 0.9313 8.1521 16 1 8.9623 -0.0211 8.0930 17 6 9.7402 1.4962 9.3888 18 7 10.3561 2.6564 9.4608 19 14 9.2310 0.6104 10.9527 20 1 8.5591 -0.6666 10.6019 21 1 10.4346 0.3263 11.7748 22 1 8.2952 1.4670 11.7244 23 6 8.8054 -0.2153 5.8360 24 6 8.4122 -0.7772 4.6374 25 16 3.5886 -1.2168 0.7537 26 1 2.9695 1.7988 -1.1233 27 1 5.4639 1.3520 -0.8417 28 1 7.0716 -0.5583 -0.2521 29 1 6.4169 -1.9621 0.6248 30 1 6.2228 -0.5186 2.5704 31 1 8.9038 -0.4128 1.3502 32 1 8.2485 -1.8163 2.2270 33 1 9.4926 1.6231 2.5247 34 1 10.1884 2.6379 4.6561 35 1 10.5467 3.0515 10.3260 36 1 8.6151 -0.7338 6.7642 37 1 7.9131 -1.7348 4.6285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176964510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:54 Heat of formation + Delta-G solvation = 61.395096 kcal Electronic energy + Delta-G solvation = -21048.477403 eV Core-core repulsion = 17690.336797 eV Total energy + Delta-G solvation = -3358.140606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.15626 -38.74061 -37.26202 -36.70994 -35.43599 -32.40392 -31.47201 -30.19483 -29.27014 -26.75293 -25.47222 -24.13029 -22.99677 -21.97967 -21.26817 -20.48693 -18.68160 -18.00448 -17.03859 -16.79471 -15.72179 -15.33634 -15.14601 -14.73132 -14.55602 -14.37580 -14.21615 -13.86493 -13.66906 -13.57631 -13.36025 -12.91721 -12.75400 -12.74347 -12.64394 -12.38313 -12.02453 -11.89542 -11.58122 -11.30652 -11.24134 -10.84135 -10.67943 -10.63591 -10.44085 -9.36046 -9.16202 -8.95768 -8.86292 -8.53571 -8.20143 -7.22098 -6.47858 -4.06655 0.06101 0.79029 1.45018 2.00844 2.19906 2.26312 2.55943 2.96747 3.10230 3.11983 3.17419 3.57379 3.94138 4.11910 4.39420 4.65043 4.77032 4.97667 5.06410 5.10366 5.23436 5.25802 5.33347 5.35971 5.56280 5.67138 5.74641 5.79062 5.85304 5.96274 6.18615 6.39449 6.67074 6.80730 6.89633 7.01815 7.08037 7.20067 7.24398 7.36746 7.41859 7.79959 7.97185 8.97888 9.67838 10.70131 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.002302 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.942234 B =12159.370251 C =13014.877859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.284 3.716 3 C -0.176 4.176 4 C -0.054 4.054 5 C -0.131 4.131 6 C -0.184 4.184 7 C 0.123 3.877 8 N -0.679 5.679 9 C 0.119 3.881 10 C -0.188 4.188 11 C -0.050 4.050 12 C -0.195 4.195 13 C 0.157 3.843 14 O -0.177 6.177 15 C -0.392 4.392 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.235 4.235 24 C -0.065 4.065 25 S 0.244 5.756 26 H 0.153 0.847 27 H 0.152 0.848 28 H 0.095 0.905 29 H 0.042 0.958 30 H 0.344 0.656 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.270 0.730 36 H 0.126 0.874 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.476 -7.902 -19.170 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.032 4.032 3 C -0.297 4.297 4 C -0.090 4.090 5 C -0.162 4.162 6 C -0.305 4.305 7 C -0.007 4.007 8 N -0.311 5.311 9 C -0.009 4.009 10 C -0.189 4.189 11 C -0.069 4.069 12 C -0.214 4.214 13 C 0.103 3.897 14 O -0.080 6.080 15 C -0.468 4.468 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.254 4.254 24 C -0.084 4.084 25 S 0.512 5.488 26 H 0.170 0.830 27 H 0.169 0.831 28 H 0.113 0.887 29 H 0.060 0.940 30 H 0.163 0.837 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.144 0.856 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.064 -8.315 -18.378 22.543 hybrid contribution 0.297 0.049 0.335 0.451 sum -9.767 -8.266 -18.043 22.119 Atomic orbital electron populations 1.81306 1.11231 1.07454 1.08843 1.24333 0.90984 0.94122 0.93713 1.20340 0.89169 1.05422 1.14759 1.20762 0.92327 0.98155 0.97777 1.19918 0.96035 0.97968 1.02234 1.24257 1.00587 1.01098 1.04519 1.20478 0.88995 0.96392 0.94860 1.60658 1.04099 1.62613 1.03748 1.20640 0.88721 0.96054 0.95471 1.19048 1.08632 0.98072 0.93186 1.20460 0.96171 0.93956 0.96328 1.20237 1.09152 1.01663 0.90361 1.19416 0.91389 0.91337 0.87599 1.83980 1.65132 1.48058 1.10855 1.21373 1.39413 1.04458 0.81547 0.89011 1.25299 0.96580 0.96111 0.98555 1.70044 1.37829 1.15958 1.25791 0.85648 0.78508 0.78979 0.80293 1.19111 1.20139 1.20106 1.21118 1.07950 0.97973 0.98387 1.20584 0.97818 0.98008 0.91959 1.83269 0.92989 1.22217 1.50359 0.82952 0.83081 0.88658 0.94008 0.83722 0.90801 0.95174 0.87006 0.86545 0.92032 0.85633 0.87934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.02 18.54 41.84 0.78 -4.24 16 2 C 0.28 2.86 15.83 -22.47 -0.36 2.50 16 3 C -0.18 -1.43 6.32 -38.23 -0.24 -1.67 16 4 C -0.05 -0.36 10.24 -40.39 -0.41 -0.78 16 5 C -0.13 -0.91 10.00 -41.39 -0.41 -1.32 16 6 C -0.18 -1.36 5.79 -35.89 -0.21 -1.57 16 7 C 0.12 0.93 6.11 -4.98 -0.03 0.90 16 8 N -0.68 -7.02 6.48 -116.34 -0.75 -7.78 16 9 C 0.12 1.35 5.81 -4.98 -0.03 1.32 16 10 C -0.19 -2.92 5.40 -104.58 -0.56 -3.48 16 11 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 12 C -0.19 -3.99 9.99 -39.39 -0.39 -4.39 16 13 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 14 O -0.18 -4.98 9.76 0.06 0.00 -4.98 16 15 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16 16 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -25.02 13.67 55.48 0.76 -24.26 16 19 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 C -0.23 -4.91 9.17 -39.40 -0.36 -5.27 16 24 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 25 S 0.24 1.75 23.01 -107.50 -2.47 -0.72 16 26 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.28 8.14 -51.92 -0.42 -0.15 16 30 H 0.34 3.71 8.71 -39.29 -0.34 3.37 16 31 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.13 2.65 5.64 -52.48 -0.30 2.36 16 37 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -31.04 348.60 -9.15 -40.20 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.85 Total: 3.87 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -3.84 Total: -22.57 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.78 Total: -36.28 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: 0.00 Total: -4.98 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.47 Total: -0.72 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.04 -9.15 -40.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176964510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.590 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds