Wall clock time and date at job start Tue Mar 31 2020 10:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.36633 * 125.45332 * 148.01971 * 3 2 1 5 5 C 1.37613 * 113.26576 * 179.97438 * 4 3 2 6 6 C 1.33720 * 115.09469 * 359.97438 * 5 4 3 7 7 C 1.50700 * 124.50544 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47424 * 90.00769 * 7 6 5 9 9 C 1.46898 * 111.00248 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.38299 * 119.93062 * 269.73127 * 10 9 8 12 12 C 1.38104 * 120.06808 * 179.72620 * 11 10 9 13 13 C 1.38884 * 119.92949 * 0.56361 * 12 11 10 14 14 O 1.35747 * 120.06670 * 179.68424 * 13 12 11 15 15 C 1.34830 * 116.99703 * 174.48844 * 14 13 12 16 16 H 1.08000 * 120.00274 * 5.05760 * 15 14 13 17 17 C 1.38659 * 119.99992 * 185.05449 * 15 14 13 18 18 N 1.31550 * 119.99982 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99925 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47145 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46735 * 119.99940 * 19 17 15 22 22 H 1.48499 * 109.47152 * 240.00179 * 19 17 15 23 23 C 1.38875 * 119.85840 * 359.70732 * 13 12 11 24 24 C 1.38094 * 119.93651 * 0.02562 * 23 13 12 25 25 S 1.70613 * 110.97925 * 0.27183 * 6 5 4 26 26 H 1.07997 * 123.36651 * 359.96506 * 4 3 2 27 27 H 1.07999 * 122.45061 * 180.02562 * 5 4 3 28 28 H 1.08994 * 109.47406 * 329.99897 * 7 6 5 29 29 H 1.09008 * 109.46834 * 210.00228 * 7 6 5 30 30 H 1.00902 * 110.99774 * 56.03492 * 8 7 6 31 31 H 1.09000 * 109.46988 * 59.99865 * 9 8 7 32 32 H 1.08994 * 109.47006 * 300.00220 * 9 8 7 33 33 H 1.07995 * 119.96585 * 359.97438 * 11 10 9 34 34 H 1.08003 * 120.03457 * 180.27214 * 12 11 10 35 35 H 0.97003 * 120.00129 * 180.02562 * 18 17 15 36 36 H 1.08008 * 120.03256 * 179.97438 * 23 13 12 37 37 H 1.07995 * 119.96949 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3601 0.9451 -0.5895 5 6 4.7053 0.6995 -0.4351 6 6 5.0045 -0.4054 0.2560 7 6 6.4059 -0.8746 0.5509 8 7 6.8600 -0.2930 1.8212 9 6 8.2253 -0.7299 2.1421 10 6 8.6558 -0.1141 3.4484 11 6 9.2992 1.1101 3.4552 12 6 9.6899 1.6798 4.6511 13 6 9.4466 1.0165 5.8468 14 8 9.8352 1.5709 7.0233 15 6 9.4682 0.9313 8.1521 16 1 8.9623 -0.0211 8.0930 17 6 9.7402 1.4962 9.3888 18 7 10.3561 2.6564 9.4608 19 14 9.2310 0.6104 10.9527 20 1 8.5591 -0.6666 10.6019 21 1 10.4346 0.3263 11.7748 22 1 8.2952 1.4670 11.7244 23 6 8.8054 -0.2153 5.8360 24 6 8.4122 -0.7772 4.6374 25 16 3.5886 -1.2168 0.7537 26 1 2.9695 1.7988 -1.1233 27 1 5.4639 1.3520 -0.8417 28 1 7.0716 -0.5583 -0.2521 29 1 6.4169 -1.9621 0.6248 30 1 6.2228 -0.5186 2.5704 31 1 8.9038 -0.4128 1.3502 32 1 8.2485 -1.8163 2.2270 33 1 9.4926 1.6231 2.5247 34 1 10.1884 2.6379 4.6561 35 1 10.5467 3.0515 10.3260 36 1 8.6151 -0.7338 6.7642 37 1 7.9131 -1.7348 4.6285 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176964510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:53 Heat of formation + Delta-G solvation = 42.371291 kcal Electronic energy + Delta-G solvation = -21049.302337 eV Core-core repulsion = 17690.336797 eV Total energy + Delta-G solvation = -3358.965540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74982 -39.38190 -38.59854 -37.64261 -36.42225 -34.29024 -32.45080 -31.71973 -30.36758 -27.80473 -27.10706 -25.15736 -23.70967 -23.51984 -21.95976 -21.81873 -19.82919 -19.31613 -18.77885 -17.38003 -16.76614 -16.42358 -16.24785 -15.92294 -15.71020 -15.55520 -15.43431 -15.12258 -15.08128 -14.60510 -14.36146 -14.18010 -13.94426 -13.70923 -13.50388 -13.41877 -13.25208 -12.96655 -12.73830 -12.55426 -12.36250 -12.22257 -12.10786 -11.96599 -11.77343 -11.13218 -10.78962 -9.77366 -9.71576 -9.49242 -9.27824 -8.85690 -8.45764 -6.13516 -0.52968 0.20298 0.66271 0.72768 0.90688 1.35712 1.43356 1.46533 1.53809 1.81966 2.18520 2.25947 2.82806 2.89394 3.15082 3.57261 3.57397 3.82391 4.10810 4.12022 4.24361 4.28691 4.45562 4.56553 4.63971 4.68725 4.78600 4.84043 4.87680 5.05402 5.15170 5.18902 5.26810 5.36944 5.45249 5.62858 5.76265 5.86107 6.05742 6.08037 6.30710 6.33465 6.43248 6.99432 7.81823 8.77853 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.002302 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.942234 B =12159.370251 C =13014.877859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.304 3.696 3 C -0.199 4.199 4 C -0.042 4.042 5 C -0.134 4.134 6 C -0.186 4.186 7 C 0.126 3.874 8 N -0.690 5.690 9 C 0.123 3.877 10 C -0.157 4.157 11 C -0.045 4.045 12 C -0.209 4.209 13 C 0.112 3.888 14 O -0.235 6.235 15 C -0.410 4.410 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.251 1.251 21 H -0.269 1.269 22 H -0.270 1.270 23 C -0.245 4.245 24 C -0.062 4.062 25 S 0.253 5.747 26 H 0.171 0.829 27 H 0.167 0.833 28 H 0.111 0.889 29 H 0.057 0.943 30 H 0.341 0.659 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.147 0.853 34 H 0.109 0.891 35 H 0.272 0.728 36 H 0.115 0.885 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.068 -9.961 -21.774 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.011 4.011 3 C -0.320 4.320 4 C -0.079 4.079 5 C -0.164 4.164 6 C -0.306 4.306 7 C -0.004 4.004 8 N -0.322 5.322 9 C -0.005 4.005 10 C -0.158 4.158 11 C -0.064 4.064 12 C -0.228 4.228 13 C 0.061 3.939 14 O -0.142 6.142 15 C -0.487 4.487 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.174 1.174 21 H -0.194 1.194 22 H -0.195 1.195 23 C -0.265 4.265 24 C -0.081 4.081 25 S 0.521 5.479 26 H 0.188 0.812 27 H 0.184 0.816 28 H 0.129 0.871 29 H 0.075 0.925 30 H 0.159 0.841 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.165 0.835 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.677 -10.413 -21.049 25.797 hybrid contribution 0.449 0.604 0.711 1.036 sum -10.227 -9.809 -20.338 24.788 Atomic orbital electron populations 1.81317 1.12595 1.09113 1.10708 1.24597 0.91309 0.92782 0.92367 1.20446 0.88269 1.06789 1.16516 1.21030 0.92270 0.98013 0.96613 1.20130 0.96258 0.98020 1.02023 1.24382 1.00639 1.01214 1.04414 1.20544 0.89003 0.97192 0.93684 1.60568 1.03448 1.63363 1.04796 1.20647 0.89785 0.96914 0.93158 1.19639 1.04677 0.96538 0.94933 1.20885 0.94954 0.94462 0.96079 1.20500 1.09557 1.01788 0.90953 1.19989 0.93523 0.93040 0.87311 1.83941 1.68145 1.49976 1.12136 1.21842 1.39613 1.04989 0.82226 0.88120 1.26584 0.96513 0.96995 1.02129 1.70189 1.40762 1.18354 1.26719 0.84534 0.78361 0.78131 0.75210 1.17415 1.19369 1.19481 1.21230 1.08149 0.97268 0.99812 1.20979 0.96956 0.99295 0.90866 1.83264 0.92775 1.21800 1.50029 0.81196 0.81582 0.87115 0.92516 0.84063 0.88829 0.93124 0.83485 0.87283 0.91910 0.86719 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.16 18.54 19.00 0.35 -10.81 16 2 C 0.30 5.86 15.83 88.33 1.40 7.25 16 3 C -0.20 -2.83 6.32 23.14 0.15 -2.68 16 4 C -0.04 -0.45 10.24 21.75 0.22 -0.23 16 5 C -0.13 -1.35 10.00 21.10 0.21 -1.14 16 6 C -0.19 -2.02 5.79 24.66 0.14 -1.88 16 7 C 0.13 1.25 6.11 85.56 0.52 1.77 16 8 N -0.69 -10.77 6.48 -522.00 -3.38 -14.15 16 9 C 0.12 2.09 5.81 85.56 0.50 2.59 16 10 C -0.16 -4.24 5.40 -19.83 -0.11 -4.34 16 11 C -0.05 -1.41 9.69 22.25 0.22 -1.19 16 12 C -0.21 -8.65 9.99 22.39 0.22 -8.42 16 13 C 0.11 5.47 6.65 22.58 0.15 5.62 16 14 O -0.24 -14.14 9.76 -22.71 -0.22 -14.36 16 15 C -0.41 -23.84 9.49 67.92 0.64 -23.20 16 16 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 17 C -0.03 -1.42 5.49 84.84 0.47 -0.96 16 18 N -0.92 -56.71 13.67 21.61 0.30 -56.42 16 19 Si 1.02 42.78 29.55 68.60 2.03 44.81 16 20 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 23 C -0.25 -10.28 9.17 22.39 0.21 -10.08 16 24 C -0.06 -1.94 9.69 22.25 0.22 -1.73 16 25 S 0.25 2.97 23.01 -56.49 -1.30 1.67 16 26 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 27 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 28 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.34 5.81 8.71 -89.69 -0.78 5.02 16 31 H 0.09 1.33 8.08 -2.39 -0.02 1.32 16 32 H 0.05 0.72 8.08 -2.39 -0.02 0.70 16 33 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.12 4.96 5.64 -2.91 -0.02 4.94 16 37 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -73.77 348.60 3.27 -70.50 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.34 Total: 17.38 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 5.15 Total: -38.62 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -2.73 Total: -81.39 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.22 Total: -14.36 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.30 Total: 1.67 kcal Total: -73.77 3.27 -70.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176964510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.872 kcal (2) G-P(sol) polarization free energy of solvation -73.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds