Wall clock time and date at job start Tue Mar 31 2020 10:19:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52991 * 109.47511 * 2 1
4 4 H 1.08995 * 109.47260 * 305.85059 * 3 2 1
5 5 C 1.50703 * 109.47411 * 185.84901 * 3 2 1
6 6 H 1.08003 * 120.00458 * 243.39924 * 5 3 2
7 7 C 1.37883 * 119.99844 * 63.39811 * 5 3 2
8 8 N 1.31513 * 119.99936 * 196.04942 * 7 5 3
9 9 Si 1.86795 * 119.99706 * 16.04683 * 7 5 3
10 10 H 1.48502 * 109.47100 * 92.79093 * 9 7 5
11 11 H 1.48502 * 109.47206 * 212.78655 * 9 7 5
12 12 H 1.48501 * 109.47756 * 332.78877 * 9 7 5
13 13 N 1.46904 * 109.47137 * 65.85051 * 3 2 1
14 14 C 1.46899 * 111.00309 * 258.53215 * 13 3 2
15 15 C 1.50697 * 109.47395 * 175.32684 * 14 13 3
16 16 C 1.38167 * 120.01824 * 260.27568 * 15 14 13
17 17 C 1.38343 * 120.04040 * 180.27815 * 16 15 14
18 18 Cl 1.73605 * 119.95811 * 179.73892 * 17 16 15
19 19 C 1.38387 * 120.08848 * 359.72140 * 17 16 15
20 20 C 1.38124 * 120.03645 * 359.97438 * 19 17 16
21 21 N 1.48014 * 120.01971 * 180.02562 * 20 19 17
22 22 O 1.21796 * 119.99573 * 359.97269 * 21 20 19
23 23 O 1.21800 * 119.99962 * 179.97438 * 21 20 19
24 24 C 1.38695 * 120.02359 * 79.99650 * 15 14 13
25 25 O 1.35922 * 120.04171 * 359.97438 * 24 15 14
26 26 H 1.08995 * 109.48026 * 175.81635 * 1 2 3
27 27 H 1.09008 * 109.46907 * 295.82327 * 1 2 3
28 28 H 1.09007 * 109.46960 * 55.81583 * 1 2 3
29 29 H 1.09003 * 109.46856 * 239.99805 * 2 1 3
30 30 H 1.09003 * 109.46966 * 120.00834 * 2 1 3
31 31 H 0.97001 * 119.99852 * 179.97438 * 8 7 5
32 32 H 1.00897 * 110.99918 * 134.57436 * 13 3 2
33 33 H 1.09000 * 109.46737 * 55.31789 * 14 13 3
34 34 H 1.09006 * 109.46355 * 295.32760 * 14 13 3
35 35 H 1.08003 * 119.98248 * 0.02562 * 16 15 14
36 36 H 1.07991 * 119.98427 * 180.02562 * 19 17 16
37 37 H 0.96698 * 114.00264 * 269.72058 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.5938 1.9856 -0.8329
5 6 3.5401 1.4448 -0.1448
6 1 4.1587 1.8358 0.6495
7 6 4.1228 0.9478 -1.2913
8 7 5.4047 0.6544 -1.3034
9 14 3.0914 0.6912 -2.8274
10 1 3.1672 1.9028 -3.6827
11 1 3.6081 -0.4796 -3.5808
12 1 1.6788 0.4463 -2.4401
13 7 1.6691 2.0930 1.2638
14 6 0.5007 2.9650 1.0840
15 6 0.0804 3.5235 2.4190
16 6 -0.9774 2.9565 3.1035
17 6 -1.3672 3.4725 4.3265
18 17 -2.7010 2.7626 5.1815
19 6 -0.6953 4.5537 4.8693
20 6 0.3667 5.1192 4.1909
21 7 1.0855 6.2752 4.7722
22 8 0.7403 6.7282 5.8487
23 8 2.0222 6.7734 4.1738
24 6 0.7589 4.6035 2.9641
25 8 1.8036 5.1587 2.2950
26 1 -0.3635 -1.0248 -0.0750
27 1 -0.3633 0.4477 0.9251
28 1 -0.3633 0.5774 -0.8502
29 1 1.8933 -0.5139 -0.8900
30 1 1.8933 -0.5140 0.8899
31 1 5.8146 0.3044 -2.1099
32 1 2.4478 2.6065 1.6483
33 1 -0.3200 2.3891 0.6563
34 1 0.7585 3.7839 0.4123
35 1 -1.5028 2.1124 2.6817
36 1 -1.0007 4.9549 5.8243
37 1 2.6614 4.7683 2.5114
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000184091410.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:19:26
Heat of formation + Delta-G solvation = -25.977993 kcal
Electronic energy + Delta-G solvation = -23987.958935 eV
Core-core repulsion = 20180.843827 eV
Total energy + Delta-G solvation = -3807.115108 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.087 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.33523 -40.39834 -37.77515 -36.88569 -36.65235 -36.32124 -33.57008 -32.13838
-31.33408 -30.21969 -27.70485 -26.72130 -24.91961 -22.87128 -22.64581 -21.80822
-19.90635 -19.30801 -18.81026 -18.55237 -17.63433 -17.11734 -16.74894 -16.36722
-15.51623 -15.44412 -14.54753 -14.31906 -13.89609 -13.69642 -13.29485 -13.11077
-13.01570 -12.56470 -12.38395 -11.92830 -11.76017 -11.73120 -11.66776 -11.60043
-11.43751 -11.18067 -10.99788 -10.92569 -10.83090 -10.43637 -10.00703 -9.86145
-9.52936 -9.32315 -9.13074 -8.57672 -7.78522 -6.26968 -4.23837 -0.40488
0.36229 1.07993 1.12783 1.62940 2.70392 3.17280 3.27463 3.29621
3.48549 3.98851 4.27835 4.29226 4.37842 4.52689 4.84823 5.02321
5.05555 5.12520 5.26512 5.42385 5.64697 5.85330 5.87146 5.88890
5.94024 6.08499 6.23550 6.47086 6.58322 6.83251 6.84098 7.15757
7.26350 7.44241 7.55521 7.70010 8.03827 8.38155 8.78644 9.37881
10.85543
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.015112 B = 0.004070 C = 0.003344
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1852.434989 B = 6877.959859 C = 8370.465590
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.109 4.109
3 C 0.194 3.806
4 H 0.008 0.992
5 C -0.540 4.540
6 H 0.076 0.924
7 C 0.082 3.918
8 N -0.885 5.885
9 Si 0.863 3.137
10 H -0.281 1.281
11 H -0.286 1.286
12 H -0.251 1.251
13 N -0.672 5.672
14 C 0.091 3.909
15 C -0.079 4.079
16 C -0.029 4.029
17 C -0.049 4.049
18 Cl -0.042 7.042
19 C -0.044 4.044
20 C -0.067 4.067
21 N 0.034 4.966
22 O -0.174 6.174
23 O -0.131 6.131
24 C 0.194 3.806
25 O -0.467 6.467
26 H 0.037 0.963
27 H 0.052 0.948
28 H 0.038 0.962
29 H 0.052 0.948
30 H 0.060 0.940
31 H 0.266 0.734
32 H 0.336 0.664
33 H 0.088 0.912
34 H 0.053 0.947
35 H 0.157 0.843
36 H 0.163 0.837
37 H 0.412 0.588
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.990 4.619 9.767 18.478
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.148 4.148
3 C 0.085 3.915
4 H 0.026 0.974
5 C -0.578 4.578
6 H 0.094 0.906
7 C -0.123 4.123
8 N -0.521 5.521
9 Si 0.690 3.310
10 H -0.207 1.207
11 H -0.212 1.212
12 H -0.175 1.175
13 N -0.304 5.304
14 C -0.038 4.038
15 C -0.081 4.081
16 C -0.049 4.049
17 C -0.076 4.076
18 Cl -0.013 7.013
19 C -0.064 4.064
20 C -0.152 4.152
21 N 0.554 4.446
22 O -0.385 6.385
23 O -0.352 6.352
24 C 0.146 3.854
25 O -0.281 6.281
26 H 0.056 0.944
27 H 0.071 0.929
28 H 0.058 0.942
29 H 0.071 0.929
30 H 0.079 0.921
31 H 0.075 0.925
32 H 0.154 0.846
33 H 0.107 0.893
34 H 0.071 0.929
35 H 0.174 0.826
36 H 0.181 0.819
37 H 0.274 0.726
Dipole moment (debyes) X Y Z Total
from point charges -16.083 3.728 9.444 19.020
hybrid contribution 0.460 0.508 -0.914 1.142
sum -15.623 4.236 8.530 18.297
Atomic orbital electron populations
1.21898 0.98701 0.99785 1.00365 1.21868 0.92627 0.99184 1.01101
1.19486 0.95829 0.90762 0.85389 0.97448 1.21138 0.89133 1.43307
1.04191 0.90629 1.24880 0.94767 0.93852 0.98768 1.69977 1.11710
1.41877 1.28524 0.87205 0.82206 0.77996 0.83635 1.20691 1.21205
1.17486 1.60735 1.07194 1.31954 1.30471 1.21052 0.97049 0.96222
0.89453 1.20410 0.95502 0.93133 0.99101 1.21351 0.94235 0.97909
0.91357 1.20567 0.94688 0.97117 0.95268 1.98410 1.43761 1.82659
1.76440 1.20663 0.91819 0.93429 1.00464 1.21432 1.01472 0.95295
0.96978 1.43292 1.00189 1.00936 1.00191 1.94533 1.70851 1.64601
1.08510 1.94604 1.18540 1.60581 1.61521 1.18119 0.90894 0.89876
0.86531 1.84801 1.17126 1.61189 1.64936 0.94391 0.92906 0.94240
0.92934 0.92134 0.92454 0.84554 0.89348 0.92911 0.82553 0.81938
0.72600
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.38 8.74 37.16 0.32 -2.05 16
2 C -0.11 -2.16 4.85 -26.74 -0.13 -2.29 16
3 C 0.19 4.00 1.75 -68.87 -0.12 3.88 16
4 H 0.01 0.17 6.35 -51.93 -0.33 -0.16 16
5 C -0.54 -13.68 9.03 -34.44 -0.31 -13.99 16
6 H 0.08 2.07 7.67 -52.48 -0.40 1.66 16
7 C 0.08 2.18 5.31 -17.82 -0.09 2.08 16
8 N -0.88 -25.45 13.96 55.43 0.77 -24.68 16
9 Si 0.86 19.85 25.76 -169.99 -4.38 15.47 16
10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16
11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16
12 H -0.25 -5.36 5.49 56.52 0.31 -5.05 16
13 N -0.67 -11.31 6.07 -109.22 -0.66 -11.97 16
14 C 0.09 1.26 4.82 -4.98 -0.02 1.23 16
15 C -0.08 -0.93 5.45 -104.48 -0.57 -1.50 16
16 C -0.03 -0.29 9.45 -39.57 -0.37 -0.67 16
17 C -0.05 -0.47 6.32 -39.49 -0.25 -0.72 16
18 Cl -0.04 -0.36 28.95 -51.86 -1.50 -1.86 16
19 C -0.04 -0.45 9.33 -39.57 -0.37 -0.82 16
20 C -0.07 -0.83 6.86 -79.80 -0.55 -1.38 16
21 N 0.03 0.48 4.45 34.03 0.15 0.63 16
22 O -0.17 -2.50 18.45 -29.46 -0.54 -3.05 16
23 O -0.13 -1.98 17.24 -36.49 -0.63 -2.61 16
24 C 0.19 2.40 6.66 -39.23 -0.26 2.14 16
25 O -0.47 -5.97 10.71 -41.62 -0.45 -6.42 16
26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16
27 H 0.05 0.75 6.66 -51.92 -0.35 0.40 16
28 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16
29 H 0.05 1.12 4.88 -51.93 -0.25 0.86 16
30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16
32 H 0.34 5.68 7.68 -39.29 -0.30 5.38 16
33 H 0.09 1.14 5.89 -51.93 -0.31 0.84 16
34 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16
35 H 0.16 1.31 8.04 -52.48 -0.42 0.89 16
36 H 0.16 1.45 7.61 -52.49 -0.40 1.05 16
37 H 0.41 4.16 8.83 45.56 0.40 4.56 16
LS Contribution 328.06 15.07 4.94 4.94
Total: -1.00 -28.91 328.06 -8.28 -37.19
By element:
Atomic # 1 Polarization: 9.69 SS G_CDS: -3.26 Total: 6.43 kcal
Atomic # 6 Polarization: -11.35 SS G_CDS: -2.73 Total: -14.08 kcal
Atomic # 7 Polarization: -36.28 SS G_CDS: 0.26 Total: -36.02 kcal
Atomic # 8 Polarization: -10.46 SS G_CDS: -1.62 Total: -12.08 kcal
Atomic # 14 Polarization: 19.85 SS G_CDS: -4.38 Total: 15.47 kcal
Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -28.91 -8.28 -37.19 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000184091410.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.214 kcal
(2) G-P(sol) polarization free energy of solvation -28.913 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.700 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.978 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds