Wall clock time and date at job start Tue Mar 31 2020 10:19:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52991 * 109.47511 * 2 1
4 4 H 1.08995 * 109.47260 * 305.85059 * 3 2 1
5 5 C 1.50703 * 109.47411 * 185.84901 * 3 2 1
6 6 H 1.08003 * 120.00458 * 243.39924 * 5 3 2
7 7 C 1.37883 * 119.99844 * 63.39811 * 5 3 2
8 8 N 1.31513 * 119.99936 * 196.04942 * 7 5 3
9 9 Si 1.86795 * 119.99706 * 16.04683 * 7 5 3
10 10 H 1.48502 * 109.47100 * 92.79093 * 9 7 5
11 11 H 1.48502 * 109.47206 * 212.78655 * 9 7 5
12 12 H 1.48501 * 109.47756 * 332.78877 * 9 7 5
13 13 N 1.46904 * 109.47137 * 65.85051 * 3 2 1
14 14 C 1.46899 * 111.00309 * 258.53215 * 13 3 2
15 15 C 1.50697 * 109.47395 * 175.32684 * 14 13 3
16 16 C 1.38167 * 120.01824 * 260.27568 * 15 14 13
17 17 C 1.38343 * 120.04040 * 180.27815 * 16 15 14
18 18 Cl 1.73605 * 119.95811 * 179.73892 * 17 16 15
19 19 C 1.38387 * 120.08848 * 359.72140 * 17 16 15
20 20 C 1.38124 * 120.03645 * 359.97438 * 19 17 16
21 21 N 1.48014 * 120.01971 * 180.02562 * 20 19 17
22 22 O 1.21796 * 119.99573 * 359.97269 * 21 20 19
23 23 O 1.21800 * 119.99962 * 179.97438 * 21 20 19
24 24 C 1.38695 * 120.02359 * 79.99650 * 15 14 13
25 25 O 1.35922 * 120.04171 * 359.97438 * 24 15 14
26 26 H 1.08995 * 109.48026 * 175.81635 * 1 2 3
27 27 H 1.09008 * 109.46907 * 295.82327 * 1 2 3
28 28 H 1.09007 * 109.46960 * 55.81583 * 1 2 3
29 29 H 1.09003 * 109.46856 * 239.99805 * 2 1 3
30 30 H 1.09003 * 109.46966 * 120.00834 * 2 1 3
31 31 H 0.97001 * 119.99852 * 179.97438 * 8 7 5
32 32 H 1.00897 * 110.99918 * 134.57436 * 13 3 2
33 33 H 1.09000 * 109.46737 * 55.31789 * 14 13 3
34 34 H 1.09006 * 109.46355 * 295.32760 * 14 13 3
35 35 H 1.08003 * 119.98248 * 0.02562 * 16 15 14
36 36 H 1.07991 * 119.98427 * 180.02562 * 19 17 16
37 37 H 0.96698 * 114.00264 * 269.72058 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.5938 1.9856 -0.8329
5 6 3.5401 1.4448 -0.1448
6 1 4.1587 1.8358 0.6495
7 6 4.1228 0.9478 -1.2913
8 7 5.4047 0.6544 -1.3034
9 14 3.0914 0.6912 -2.8274
10 1 3.1672 1.9028 -3.6827
11 1 3.6081 -0.4796 -3.5808
12 1 1.6788 0.4463 -2.4401
13 7 1.6691 2.0930 1.2638
14 6 0.5007 2.9650 1.0840
15 6 0.0804 3.5235 2.4190
16 6 -0.9774 2.9565 3.1035
17 6 -1.3672 3.4725 4.3265
18 17 -2.7010 2.7626 5.1815
19 6 -0.6953 4.5537 4.8693
20 6 0.3667 5.1192 4.1909
21 7 1.0855 6.2752 4.7722
22 8 0.7403 6.7282 5.8487
23 8 2.0222 6.7734 4.1738
24 6 0.7589 4.6035 2.9641
25 8 1.8036 5.1587 2.2950
26 1 -0.3635 -1.0248 -0.0750
27 1 -0.3633 0.4477 0.9251
28 1 -0.3633 0.5774 -0.8502
29 1 1.8933 -0.5139 -0.8900
30 1 1.8933 -0.5140 0.8899
31 1 5.8146 0.3044 -2.1099
32 1 2.4478 2.6065 1.6483
33 1 -0.3200 2.3891 0.6563
34 1 0.7585 3.7839 0.4123
35 1 -1.5028 2.1124 2.6817
36 1 -1.0007 4.9549 5.8243
37 1 2.6614 4.7683 2.5114
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000184091410.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:19:25
Heat of formation + Delta-G solvation = -44.775330 kcal
Electronic energy + Delta-G solvation = -23988.774049 eV
Core-core repulsion = 20180.843827 eV
Total energy + Delta-G solvation = -3807.930222 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 314.087 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-43.38114 -41.35066 -38.66069 -38.26371 -37.66687 -37.25857 -34.95687 -33.83955
-32.46189 -31.27745 -29.24330 -27.72574 -26.24180 -24.19990 -23.79705 -22.84323
-21.46806 -20.35243 -19.88634 -19.51754 -18.94100 -18.68415 -17.71688 -17.28860
-17.01915 -16.45201 -15.82058 -15.62166 -15.37964 -14.80204 -14.60616 -14.22337
-14.10322 -13.90428 -13.70605 -13.28193 -13.01686 -12.81005 -12.73961 -12.70207
-12.62803 -12.50436 -12.31746 -12.22745 -12.09768 -11.77548 -11.62765 -11.22495
-11.08420 -10.72997 -10.57684 -10.01563 -9.18784 -8.32511 -6.31826 -1.39506
-0.50274 0.09663 0.14480 0.82626 1.34410 1.39715 1.47628 1.82372
2.34756 2.58688 3.02393 3.05087 3.48582 3.51728 3.60499 3.66426
4.05343 4.20182 4.27632 4.50853 4.55573 4.59647 4.65135 4.69372
4.87800 4.88751 4.94800 5.19867 5.26996 5.31790 5.41131 5.56842
5.82719 5.97393 6.25556 6.42012 6.42805 6.60614 6.82192 7.33744
8.83629
Molecular weight = 314.09amu
Principal moments of inertia in cm(-1)
A = 0.015112 B = 0.004070 C = 0.003344
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1852.434989 B = 6877.959859 C = 8370.465590
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.111 4.111
3 C 0.199 3.801
4 H 0.009 0.991
5 C -0.538 4.538
6 H 0.040 0.960
7 C 0.024 3.976
8 N -0.939 5.939
9 Si 0.922 3.078
10 H -0.282 1.282
11 H -0.291 1.291
12 H -0.220 1.220
13 N -0.669 5.669
14 C 0.097 3.903
15 C -0.087 4.087
16 C -0.013 4.013
17 C -0.044 4.044
18 Cl -0.024 7.024
19 C -0.033 4.033
20 C -0.080 4.080
21 N 0.036 4.964
22 O -0.171 6.171
23 O -0.168 6.168
24 C 0.189 3.811
25 O -0.482 6.482
26 H 0.054 0.946
27 H 0.072 0.928
28 H 0.046 0.954
29 H 0.034 0.966
30 H 0.047 0.953
31 H 0.265 0.735
32 H 0.333 0.667
33 H 0.106 0.894
34 H 0.042 0.958
35 H 0.181 0.819
36 H 0.178 0.822
37 H 0.419 0.581
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.626 3.900 10.082 21.535
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.149 4.149
3 C 0.090 3.910
4 H 0.026 0.974
5 C -0.576 4.576
6 H 0.058 0.942
7 C -0.175 4.175
8 N -0.578 5.578
9 Si 0.746 3.254
10 H -0.208 1.208
11 H -0.217 1.217
12 H -0.142 1.142
13 N -0.299 5.299
14 C -0.032 4.032
15 C -0.089 4.089
16 C -0.032 4.032
17 C -0.072 4.072
18 Cl 0.005 6.995
19 C -0.053 4.053
20 C -0.165 4.165
21 N 0.552 4.448
22 O -0.385 6.385
23 O -0.381 6.381
24 C 0.141 3.859
25 O -0.296 6.296
26 H 0.073 0.927
27 H 0.090 0.910
28 H 0.065 0.935
29 H 0.053 0.947
30 H 0.066 0.934
31 H 0.074 0.926
32 H 0.150 0.850
33 H 0.124 0.876
34 H 0.060 0.940
35 H 0.199 0.801
36 H 0.195 0.805
37 H 0.282 0.718
Dipole moment (debyes) X Y Z Total
from point charges -19.709 3.034 9.744 22.195
hybrid contribution 1.540 0.732 -0.837 1.900
sum -18.169 3.766 8.907 20.582
Atomic orbital electron populations
1.21822 0.95032 1.01392 1.01774 1.21776 0.95902 0.97571 0.99688
1.19329 0.92447 0.92169 0.87104 0.97352 1.21532 0.91821 1.41411
1.02800 0.94194 1.25717 0.95712 0.94034 1.02062 1.70120 1.13907
1.44366 1.29362 0.86253 0.82230 0.77441 0.79445 1.20828 1.21700
1.14228 1.60681 1.08042 1.32984 1.28225 1.21020 0.96021 0.95570
0.90604 1.20163 0.96602 0.93456 0.98647 1.21590 0.92996 0.97684
0.90911 1.20549 0.94847 0.96632 0.95162 1.98428 1.42742 1.82265
1.76051 1.20883 0.90676 0.93070 1.00658 1.21489 1.02384 0.95169
0.97455 1.43534 1.00037 1.01259 1.00005 1.94502 1.70537 1.64797
1.08666 1.94608 1.19778 1.61818 1.61943 1.18258 0.90829 0.90184
0.86658 1.84769 1.17823 1.61779 1.65277 0.92676 0.90950 0.93464
0.94697 0.93410 0.92644 0.84950 0.87580 0.94000 0.80121 0.80454
0.71811
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.91 8.74 71.98 0.63 -3.28 16
2 C -0.11 -4.14 4.85 30.59 0.15 -3.99 16
3 C 0.20 7.97 1.75 44.17 0.08 8.05 16
4 H 0.01 0.36 6.35 -2.39 -0.02 0.34 16
5 C -0.54 -27.80 9.03 25.60 0.23 -27.57 16
6 H 0.04 2.29 7.67 -2.91 -0.02 2.27 16
7 C 0.02 1.30 5.31 84.66 0.45 1.75 16
8 N -0.94 -55.99 13.96 21.45 0.30 -55.70 16
9 Si 0.92 40.86 25.76 68.60 1.77 42.63 16
10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16
11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16
12 H -0.22 -8.56 5.49 99.48 0.55 -8.02 16
13 N -0.67 -21.65 6.07 -499.47 -3.03 -24.68 16
14 C 0.10 2.43 4.82 85.56 0.41 2.84 16
15 C -0.09 -1.84 5.45 -19.77 -0.11 -1.94 16
16 C -0.01 -0.21 9.45 22.28 0.21 0.00 16
17 C -0.04 -0.70 6.32 22.33 0.14 -0.56 16
18 Cl -0.02 -0.32 28.95 -2.72 -0.08 -0.40 16
19 C -0.03 -0.60 9.33 22.28 0.21 -0.39 16
20 C -0.08 -1.88 6.86 36.47 0.25 -1.63 16
21 N 0.04 1.00 4.45 -46.24 -0.21 0.79 16
22 O -0.17 -4.78 18.45 18.89 0.35 -4.43 16
23 O -0.17 -5.22 17.24 25.61 0.44 -4.77 16
24 C 0.19 4.49 6.66 22.50 0.15 4.64 16
25 O -0.48 -12.50 10.71 -71.52 -0.77 -13.26 16
26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16
27 H 0.07 1.69 6.66 -2.38 -0.02 1.67 16
28 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16
29 H 0.03 1.41 4.88 -2.39 -0.01 1.40 16
30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16
32 H 0.33 11.30 7.68 -89.70 -0.69 10.61 16
33 H 0.11 2.30 5.89 -2.39 -0.01 2.29 16
34 H 0.04 1.17 7.85 -2.38 -0.02 1.15 16
35 H 0.18 2.08 8.04 -2.91 -0.02 2.06 16
36 H 0.18 2.67 7.61 -2.92 -0.02 2.64 16
37 H 0.42 8.96 8.83 -74.06 -0.65 8.31 16
Total: -1.00 -63.97 328.06 1.22 -62.75
By element:
Atomic # 1 Polarization: 19.51 SS G_CDS: -0.36 Total: 19.16 kcal
Atomic # 6 Polarization: -24.88 SS G_CDS: 2.80 Total: -22.08 kcal
Atomic # 7 Polarization: -76.64 SS G_CDS: -2.94 Total: -79.58 kcal
Atomic # 8 Polarization: -22.49 SS G_CDS: 0.02 Total: -22.47 kcal
Atomic # 14 Polarization: 40.86 SS G_CDS: 1.77 Total: 42.63 kcal
Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal
Total: -63.97 1.22 -62.75 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000184091410.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.972 kcal
(2) G-P(sol) polarization free energy of solvation -63.965 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.993 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.747 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.775 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds