Wall clock time and date at job start Tue Mar 31 2020 10:23:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09005 * 109.46964 * 2 1
4 4 S 1.81397 * 109.46928 * 119.99644 * 2 1 3
5 5 C 1.81399 * 103.00248 * 295.00007 * 4 2 1
6 6 C 1.52998 * 109.47160 * 179.97438 * 5 4 2
7 7 C 1.50700 * 109.47106 * 180.02562 * 6 5 4
8 8 H 1.08001 * 120.00071 * 359.97438 * 7 6 5
9 9 C 1.37882 * 119.99933 * 180.02562 * 7 6 5
10 10 N 1.31514 * 120.00228 * 0.02562 * 9 7 6
11 11 Si 1.86799 * 119.99703 * 179.97438 * 9 7 6
12 12 H 1.48501 * 109.47549 * 0.02562 * 11 9 7
13 13 H 1.48502 * 109.46997 * 120.00270 * 11 9 7
14 14 H 1.48505 * 109.47158 * 239.99966 * 11 9 7
15 15 C 1.50690 * 109.47383 * 239.99920 * 2 1 3
16 16 C 1.38235 * 120.00265 * 119.99816 * 15 2 1
17 17 C 1.38241 * 120.00144 * 180.02562 * 16 15 2
18 18 C 1.38228 * 119.99681 * 359.97438 * 17 16 15
19 19 S 1.76203 * 119.99649 * 179.97438 * 18 17 16
20 20 C 1.81404 * 104.44838 * 90.00553 * 19 18 17
21 21 O 1.42100 * 104.28012 * 333.93528 * 19 18 17
22 22 O 1.42100 * 104.27885 * 206.07639 * 19 18 17
23 23 C 1.38234 * 120.00757 * 0.25984 * 18 17 16
24 24 C 1.38235 * 120.00049 * 300.02287 * 15 2 1
25 25 H 1.09000 * 109.47083 * 300.00403 * 1 2 3
26 26 H 1.08998 * 109.46874 * 60.00291 * 1 2 3
27 27 H 1.08996 * 109.46791 * 180.02562 * 1 2 3
28 28 H 1.08998 * 109.47365 * 300.00386 * 5 4 2
29 29 H 1.09002 * 109.46874 * 60.00392 * 5 4 2
30 30 H 1.08998 * 109.47331 * 300.00449 * 6 5 4
31 31 H 1.09007 * 109.47295 * 60.00262 * 6 5 4
32 32 H 0.96995 * 119.99945 * 179.97438 * 10 9 7
33 33 H 1.07998 * 120.00298 * 0.02562 * 16 15 2
34 34 H 1.07998 * 119.99727 * 179.97438 * 17 16 15
35 35 H 1.09002 * 109.47124 * 299.99881 * 20 19 18
36 36 H 1.09001 * 109.46975 * 180.02562 * 20 19 18
37 37 H 1.09004 * 109.47147 * 59.99966 * 20 19 18
38 38 H 1.08001 * 120.00506 * 179.72371 * 23 18 17
39 39 H 1.08000 * 120.00004 * 359.97438 * 24 15 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 16 2.1346 -0.8550 1.4812
5 6 1.5664 0.2154 2.8309
6 6 2.0038 -0.3783 4.1714
7 6 1.5312 0.5107 5.2927
8 1 0.9749 1.4095 5.0714
9 6 1.8100 0.1771 6.6012
10 7 2.4888 -0.9166 6.8707
11 14 1.2248 1.2794 7.9911
12 1 0.4890 2.4394 7.4267
13 1 0.3237 0.5106 8.8867
14 1 2.3959 1.7644 8.7649
15 6 2.0324 -0.7104 -1.2303
16 6 2.8271 -0.0386 -2.1403
17 6 3.2875 -0.6902 -3.2693
18 6 2.9536 -2.0136 -3.4879
19 16 3.5399 -2.8438 -4.9272
20 6 5.1255 -3.5642 -4.4199
21 8 3.7448 -1.8033 -5.8731
22 8 2.5794 -3.8652 -5.1584
23 6 2.1549 -2.6840 -2.5805
24 6 1.6981 -2.0337 -1.4493
25 1 -0.3633 0.5139 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0276 0.0005
28 1 2.0000 1.2086 2.7141
29 1 0.4791 0.2882 2.8037
30 1 1.5698 -1.3713 4.2879
31 1 3.0911 -0.4515 4.1989
32 1 2.6852 -1.1511 7.7912
33 1 3.0883 0.9953 -1.9693
34 1 3.9081 -0.1651 -3.9804
35 1 5.8016 -2.7693 -4.1049
36 1 5.5650 -4.1030 -5.2593
37 1 4.9630 -4.2529 -3.5907
38 1 1.8903 -3.7167 -2.7536
39 1 1.0772 -2.5586 -0.7384
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000191025298.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:23:26
Heat of formation + Delta-G solvation = -61.544357 kcal
Electronic energy + Delta-G solvation = -20573.965293 eV
Core-core repulsion = 17313.644832 eV
Total energy + Delta-G solvation = -3260.320461 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 314.080 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-39.67533 -37.39388 -36.24111 -34.55247 -33.75626 -31.30300 -31.00755 -30.09352
-29.62098 -25.30739 -24.63978 -23.09517 -21.84151 -20.91510 -19.33520 -18.10458
-16.59490 -16.52807 -16.50455 -16.19773 -15.62811 -14.91978 -14.75092 -14.54647
-14.04050 -13.89614 -13.82271 -13.69313 -13.57892 -13.33558 -12.97174 -12.67227
-12.37969 -12.31632 -12.27303 -11.87142 -11.67552 -11.47740 -11.38518 -11.24387
-11.07753 -10.85307 -10.60515 -10.26032 -9.77284 -9.70439 -9.25181 -9.17378
-9.07876 -8.48077 -7.28007 -6.11766 -4.16545 -0.26096 0.51498 1.10348
2.04715 2.55959 3.06426 3.24144 3.25964 3.32050 3.35436 3.65976
3.80335 4.33586 4.37146 4.39793 4.44189 4.61132 4.67201 4.92446
5.08421 5.14968 5.24051 5.24627 5.26098 5.48058 5.55113 5.67507
5.75364 5.84680 5.89751 5.93686 6.06078 6.11216 6.29225 6.60488
6.65627 7.49782 7.57617 7.84176 8.21034 8.88618 9.47787 10.99041
Molecular weight = 314.08amu
Principal moments of inertia in cm(-1)
A = 0.035407 B = 0.002296 C = 0.002246
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 790.608001 B =12193.814914 C =12465.382581
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.037 4.037
3 H 0.094 0.906
4 S -0.267 6.267
5 C -0.060 4.060
6 C 0.038 3.962
7 C -0.521 4.521
8 H 0.058 0.942
9 C 0.060 3.940
10 N -0.890 5.890
11 Si 0.897 3.103
12 H -0.272 1.272
13 H -0.283 1.283
14 H -0.283 1.283
15 C 0.002 3.998
16 C -0.130 4.130
17 C -0.024 4.024
18 C -0.665 4.665
19 S 2.502 3.498
20 C -0.650 4.650
21 O -0.941 6.941
22 O -0.940 6.940
23 C -0.023 4.023
24 C -0.121 4.121
25 H 0.067 0.933
26 H 0.060 0.940
27 H 0.070 0.930
28 H 0.068 0.932
29 H 0.070 0.930
30 H 0.026 0.974
31 H 0.026 0.974
32 H 0.262 0.738
33 H 0.133 0.867
34 H 0.141 0.859
35 H 0.132 0.868
36 H 0.131 0.869
37 H 0.133 0.867
38 H 0.142 0.858
39 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.854 -2.775 -22.938 23.281
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.165 4.165
3 H 0.112 0.888
4 S -0.036 6.036
5 C -0.208 4.208
6 C -0.001 4.001
7 C -0.561 4.561
8 H 0.076 0.924
9 C -0.143 4.143
10 N -0.529 5.529
11 Si 0.724 3.276
12 H -0.197 1.197
13 H -0.209 1.209
14 H -0.209 1.209
15 C 0.000 4.000
16 C -0.151 4.151
17 C -0.043 4.043
18 C -0.753 4.753
19 S 2.682 3.318
20 C -0.800 4.800
21 O -0.938 6.938
22 O -0.937 6.937
23 C -0.042 4.042
24 C -0.141 4.141
25 H 0.086 0.914
26 H 0.079 0.921
27 H 0.089 0.911
28 H 0.086 0.914
29 H 0.088 0.912
30 H 0.045 0.955
31 H 0.044 0.956
32 H 0.072 0.928
33 H 0.151 0.849
34 H 0.159 0.841
35 H 0.151 0.849
36 H 0.149 0.851
37 H 0.152 0.848
38 H 0.160 0.840
39 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 3.096 -3.863 -23.499 24.014
hybrid contribution -0.581 1.857 1.759 2.623
sum 2.514 -2.006 -21.740 21.976
Atomic orbital electron populations
1.22092 0.92155 1.03500 1.02489 1.22151 0.99133 1.01413 0.93854
0.88796 1.87087 1.76101 1.40123 1.00289 1.23756 1.02274 0.98910
0.95877 1.18904 0.97526 0.96693 0.86952 1.21118 1.35901 1.08506
0.90601 0.92404 1.25018 0.95030 0.95308 0.98918 1.69976 1.39243
1.24072 1.19579 0.86464 0.78551 0.80558 0.81997 1.19695 1.20852
1.20860 1.19735 0.93201 0.93953 0.93083 1.21173 0.98738 1.00672
0.94483 1.20860 0.95458 0.92127 0.95834 1.30414 1.15688 1.06909
1.22286 1.05032 0.77035 0.75024 0.74674 1.30223 1.22344 1.14149
1.13269 1.93578 1.86537 1.55641 1.58084 1.93584 1.57200 1.58991
1.83929 1.20919 0.92065 0.99754 0.91428 1.21246 1.00935 0.94290
0.97648 0.91353 0.92058 0.91097 0.91371 0.91157 0.95528 0.95582
0.92784 0.84933 0.84101 0.84904 0.85098 0.84815 0.84006 0.84291
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.68 8.91 37.16 0.33 -1.35 16
2 C -0.04 -0.48 3.01 -27.89 -0.08 -0.57 16
3 H 0.09 1.15 7.88 -51.92 -0.41 0.74 16
4 S -0.27 -4.60 20.76 -107.50 -2.23 -6.84 16
5 C -0.06 -1.20 5.57 37.16 0.21 -1.00 16
6 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16
7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16
8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16
9 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16
10 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16
11 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16
12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
15 C 0.00 0.02 4.78 -104.63 -0.50 -0.48 16
16 C -0.13 -1.38 9.67 -39.58 -0.38 -1.76 16
17 C -0.02 -0.23 9.47 -39.58 -0.37 -0.60 16
18 C -0.67 -6.35 5.66 -39.59 -0.22 -6.57 16
19 S 2.50 19.88 5.80 -107.50 -0.62 19.26 16
20 C -0.65 -2.70 10.80 101.05 1.09 -1.61 16
21 O -0.94 -10.21 17.13 -57.54 -0.99 -11.19 16
22 O -0.94 -10.40 17.12 -57.54 -0.98 -11.39 16
23 C -0.02 -0.23 9.47 -39.58 -0.37 -0.61 16
24 C -0.12 -1.41 8.78 -39.58 -0.35 -1.75 16
25 H 0.07 0.84 6.92 -51.93 -0.36 0.48 16
26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
27 H 0.07 0.82 7.39 -51.93 -0.38 0.44 16
28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16
29 H 0.07 1.34 7.14 -51.92 -0.37 0.97 16
30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
31 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16
32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
33 H 0.13 1.15 7.95 -52.49 -0.42 0.74 16
34 H 0.14 1.06 7.57 -52.49 -0.40 0.66 16
35 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16
36 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16
37 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16
38 H 0.14 1.19 7.56 -52.49 -0.40 0.79 16
39 H 0.14 1.57 7.58 -52.49 -0.40 1.17 16
LS Contribution 353.66 15.07 5.33 5.33
Total: -1.00 -34.77 353.66 -10.62 -45.39
By element:
Atomic # 1 Polarization: 3.03 SS G_CDS: -5.63 Total: -2.60 kcal
Atomic # 6 Polarization: -27.30 SS G_CDS: -1.21 Total: -28.51 kcal
Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.49 kcal
Atomic # 8 Polarization: -20.61 SS G_CDS: -1.97 Total: -22.58 kcal
Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal
Atomic # 16 Polarization: 15.28 SS G_CDS: -2.86 Total: 12.42 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -34.77 -10.62 -45.39 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000191025298.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.155 kcal
(2) G-P(sol) polarization free energy of solvation -34.767 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.922 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.389 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.544 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds