Wall clock time and date at job start Tue Mar 31 2020 10:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46964 * 2 1 4 4 S 1.81397 * 109.46928 * 119.99644 * 2 1 3 5 5 C 1.81399 * 103.00248 * 295.00007 * 4 2 1 6 6 C 1.52998 * 109.47160 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47106 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99933 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00228 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99703 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47549 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46997 * 120.00270 * 11 9 7 14 14 H 1.48505 * 109.47158 * 239.99966 * 11 9 7 15 15 C 1.50690 * 109.47383 * 239.99920 * 2 1 3 16 16 C 1.38235 * 120.00265 * 119.99816 * 15 2 1 17 17 C 1.38241 * 120.00144 * 180.02562 * 16 15 2 18 18 C 1.38228 * 119.99681 * 359.97438 * 17 16 15 19 19 S 1.76203 * 119.99649 * 179.97438 * 18 17 16 20 20 C 1.81404 * 104.44838 * 90.00553 * 19 18 17 21 21 O 1.42100 * 104.28012 * 333.93528 * 19 18 17 22 22 O 1.42100 * 104.27885 * 206.07639 * 19 18 17 23 23 C 1.38234 * 120.00757 * 0.25984 * 18 17 16 24 24 C 1.38235 * 120.00049 * 300.02287 * 15 2 1 25 25 H 1.09000 * 109.47083 * 300.00403 * 1 2 3 26 26 H 1.08998 * 109.46874 * 60.00291 * 1 2 3 27 27 H 1.08996 * 109.46791 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47365 * 300.00386 * 5 4 2 29 29 H 1.09002 * 109.46874 * 60.00392 * 5 4 2 30 30 H 1.08998 * 109.47331 * 300.00449 * 6 5 4 31 31 H 1.09007 * 109.47295 * 60.00262 * 6 5 4 32 32 H 0.96995 * 119.99945 * 179.97438 * 10 9 7 33 33 H 1.07998 * 120.00298 * 0.02562 * 16 15 2 34 34 H 1.07998 * 119.99727 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.47124 * 299.99881 * 20 19 18 36 36 H 1.09001 * 109.46975 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.47147 * 59.99966 * 20 19 18 38 38 H 1.08001 * 120.00506 * 179.72371 * 23 18 17 39 39 H 1.08000 * 120.00004 * 359.97438 * 24 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8550 1.4812 5 6 1.5664 0.2154 2.8309 6 6 2.0038 -0.3783 4.1714 7 6 1.5312 0.5107 5.2927 8 1 0.9749 1.4095 5.0714 9 6 1.8100 0.1771 6.6012 10 7 2.4888 -0.9166 6.8707 11 14 1.2248 1.2794 7.9911 12 1 0.4890 2.4394 7.4267 13 1 0.3237 0.5106 8.8867 14 1 2.3959 1.7644 8.7649 15 6 2.0324 -0.7104 -1.2303 16 6 2.8271 -0.0386 -2.1403 17 6 3.2875 -0.6902 -3.2693 18 6 2.9536 -2.0136 -3.4879 19 16 3.5399 -2.8438 -4.9272 20 6 5.1255 -3.5642 -4.4199 21 8 3.7448 -1.8033 -5.8731 22 8 2.5794 -3.8652 -5.1584 23 6 2.1549 -2.6840 -2.5805 24 6 1.6981 -2.0337 -1.4493 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.0000 1.2086 2.7141 29 1 0.4791 0.2882 2.8037 30 1 1.5698 -1.3713 4.2879 31 1 3.0911 -0.4515 4.1989 32 1 2.6852 -1.1511 7.7912 33 1 3.0883 0.9953 -1.9693 34 1 3.9081 -0.1651 -3.9804 35 1 5.8016 -2.7693 -4.1049 36 1 5.5650 -4.1030 -5.2593 37 1 4.9630 -4.2529 -3.5907 38 1 1.8903 -3.7167 -2.7536 39 1 1.0772 -2.5586 -0.7384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191025298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:26 Heat of formation + Delta-G solvation = -61.544357 kcal Electronic energy + Delta-G solvation = -20573.965293 eV Core-core repulsion = 17313.644832 eV Total energy + Delta-G solvation = -3260.320461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.67533 -37.39388 -36.24111 -34.55247 -33.75626 -31.30300 -31.00755 -30.09352 -29.62098 -25.30739 -24.63978 -23.09517 -21.84151 -20.91510 -19.33520 -18.10458 -16.59490 -16.52807 -16.50455 -16.19773 -15.62811 -14.91978 -14.75092 -14.54647 -14.04050 -13.89614 -13.82271 -13.69313 -13.57892 -13.33558 -12.97174 -12.67227 -12.37969 -12.31632 -12.27303 -11.87142 -11.67552 -11.47740 -11.38518 -11.24387 -11.07753 -10.85307 -10.60515 -10.26032 -9.77284 -9.70439 -9.25181 -9.17378 -9.07876 -8.48077 -7.28007 -6.11766 -4.16545 -0.26096 0.51498 1.10348 2.04715 2.55959 3.06426 3.24144 3.25964 3.32050 3.35436 3.65976 3.80335 4.33586 4.37146 4.39793 4.44189 4.61132 4.67201 4.92446 5.08421 5.14968 5.24051 5.24627 5.26098 5.48058 5.55113 5.67507 5.75364 5.84680 5.89751 5.93686 6.06078 6.11216 6.29225 6.60488 6.65627 7.49782 7.57617 7.84176 8.21034 8.88618 9.47787 10.99041 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.035407 B = 0.002296 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.608001 B =12193.814914 C =12465.382581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 H 0.094 0.906 4 S -0.267 6.267 5 C -0.060 4.060 6 C 0.038 3.962 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.060 3.940 10 N -0.890 5.890 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.002 3.998 16 C -0.130 4.130 17 C -0.024 4.024 18 C -0.665 4.665 19 S 2.502 3.498 20 C -0.650 4.650 21 O -0.941 6.941 22 O -0.940 6.940 23 C -0.023 4.023 24 C -0.121 4.121 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.262 0.738 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 -2.775 -22.938 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.165 4.165 3 H 0.112 0.888 4 S -0.036 6.036 5 C -0.208 4.208 6 C -0.001 4.001 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.143 4.143 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.000 4.000 16 C -0.151 4.151 17 C -0.043 4.043 18 C -0.753 4.753 19 S 2.682 3.318 20 C -0.800 4.800 21 O -0.938 6.938 22 O -0.937 6.937 23 C -0.042 4.042 24 C -0.141 4.141 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.096 -3.863 -23.499 24.014 hybrid contribution -0.581 1.857 1.759 2.623 sum 2.514 -2.006 -21.740 21.976 Atomic orbital electron populations 1.22092 0.92155 1.03500 1.02489 1.22151 0.99133 1.01413 0.93854 0.88796 1.87087 1.76101 1.40123 1.00289 1.23756 1.02274 0.98910 0.95877 1.18904 0.97526 0.96693 0.86952 1.21118 1.35901 1.08506 0.90601 0.92404 1.25018 0.95030 0.95308 0.98918 1.69976 1.39243 1.24072 1.19579 0.86464 0.78551 0.80558 0.81997 1.19695 1.20852 1.20860 1.19735 0.93201 0.93953 0.93083 1.21173 0.98738 1.00672 0.94483 1.20860 0.95458 0.92127 0.95834 1.30414 1.15688 1.06909 1.22286 1.05032 0.77035 0.75024 0.74674 1.30223 1.22344 1.14149 1.13269 1.93578 1.86537 1.55641 1.58084 1.93584 1.57200 1.58991 1.83929 1.20919 0.92065 0.99754 0.91428 1.21246 1.00935 0.94290 0.97648 0.91353 0.92058 0.91097 0.91371 0.91157 0.95528 0.95582 0.92784 0.84933 0.84101 0.84904 0.85098 0.84815 0.84006 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.91 37.16 0.33 -1.35 16 2 C -0.04 -0.48 3.01 -27.89 -0.08 -0.57 16 3 H 0.09 1.15 7.88 -51.92 -0.41 0.74 16 4 S -0.27 -4.60 20.76 -107.50 -2.23 -6.84 16 5 C -0.06 -1.20 5.57 37.16 0.21 -1.00 16 6 C 0.04 0.96 4.98 -27.88 -0.14 0.82 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 11 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.00 0.02 4.78 -104.63 -0.50 -0.48 16 16 C -0.13 -1.38 9.67 -39.58 -0.38 -1.76 16 17 C -0.02 -0.23 9.47 -39.58 -0.37 -0.60 16 18 C -0.67 -6.35 5.66 -39.59 -0.22 -6.57 16 19 S 2.50 19.88 5.80 -107.50 -0.62 19.26 16 20 C -0.65 -2.70 10.80 101.05 1.09 -1.61 16 21 O -0.94 -10.21 17.13 -57.54 -0.99 -11.19 16 22 O -0.94 -10.40 17.12 -57.54 -0.98 -11.39 16 23 C -0.02 -0.23 9.47 -39.58 -0.37 -0.61 16 24 C -0.12 -1.41 8.78 -39.58 -0.35 -1.75 16 25 H 0.07 0.84 6.92 -51.93 -0.36 0.48 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.82 7.39 -51.93 -0.38 0.44 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.07 1.34 7.14 -51.92 -0.37 0.97 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.13 1.15 7.95 -52.49 -0.42 0.74 16 34 H 0.14 1.06 7.57 -52.49 -0.40 0.66 16 35 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 36 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 37 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.14 1.19 7.56 -52.49 -0.40 0.79 16 39 H 0.14 1.57 7.58 -52.49 -0.40 1.17 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -34.77 353.66 -10.62 -45.39 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -5.63 Total: -2.60 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: -1.21 Total: -28.51 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.49 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.97 Total: -22.58 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 15.28 SS G_CDS: -2.86 Total: 12.42 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.77 -10.62 -45.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191025298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.155 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds