Wall clock time and date at job start Tue Mar 31 2020 10:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46964 * 2 1 4 4 S 1.81397 * 109.46928 * 119.99644 * 2 1 3 5 5 C 1.81399 * 103.00248 * 295.00007 * 4 2 1 6 6 C 1.52998 * 109.47160 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47106 * 180.02562 * 6 5 4 8 8 H 1.08001 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99933 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00228 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99703 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47549 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46997 * 120.00270 * 11 9 7 14 14 H 1.48505 * 109.47158 * 239.99966 * 11 9 7 15 15 C 1.50690 * 109.47383 * 239.99920 * 2 1 3 16 16 C 1.38235 * 120.00265 * 119.99816 * 15 2 1 17 17 C 1.38241 * 120.00144 * 180.02562 * 16 15 2 18 18 C 1.38228 * 119.99681 * 359.97438 * 17 16 15 19 19 S 1.76203 * 119.99649 * 179.97438 * 18 17 16 20 20 C 1.81404 * 104.44838 * 90.00553 * 19 18 17 21 21 O 1.42100 * 104.28012 * 333.93528 * 19 18 17 22 22 O 1.42100 * 104.27885 * 206.07639 * 19 18 17 23 23 C 1.38234 * 120.00757 * 0.25984 * 18 17 16 24 24 C 1.38235 * 120.00049 * 300.02287 * 15 2 1 25 25 H 1.09000 * 109.47083 * 300.00403 * 1 2 3 26 26 H 1.08998 * 109.46874 * 60.00291 * 1 2 3 27 27 H 1.08996 * 109.46791 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47365 * 300.00386 * 5 4 2 29 29 H 1.09002 * 109.46874 * 60.00392 * 5 4 2 30 30 H 1.08998 * 109.47331 * 300.00449 * 6 5 4 31 31 H 1.09007 * 109.47295 * 60.00262 * 6 5 4 32 32 H 0.96995 * 119.99945 * 179.97438 * 10 9 7 33 33 H 1.07998 * 120.00298 * 0.02562 * 16 15 2 34 34 H 1.07998 * 119.99727 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.47124 * 299.99881 * 20 19 18 36 36 H 1.09001 * 109.46975 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.47147 * 59.99966 * 20 19 18 38 38 H 1.08001 * 120.00506 * 179.72371 * 23 18 17 39 39 H 1.08000 * 120.00004 * 359.97438 * 24 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8550 1.4812 5 6 1.5664 0.2154 2.8309 6 6 2.0038 -0.3783 4.1714 7 6 1.5312 0.5107 5.2927 8 1 0.9749 1.4095 5.0714 9 6 1.8100 0.1771 6.6012 10 7 2.4888 -0.9166 6.8707 11 14 1.2248 1.2794 7.9911 12 1 0.4890 2.4394 7.4267 13 1 0.3237 0.5106 8.8867 14 1 2.3959 1.7644 8.7649 15 6 2.0324 -0.7104 -1.2303 16 6 2.8271 -0.0386 -2.1403 17 6 3.2875 -0.6902 -3.2693 18 6 2.9536 -2.0136 -3.4879 19 16 3.5399 -2.8438 -4.9272 20 6 5.1255 -3.5642 -4.4199 21 8 3.7448 -1.8033 -5.8731 22 8 2.5794 -3.8652 -5.1584 23 6 2.1549 -2.6840 -2.5805 24 6 1.6981 -2.0337 -1.4493 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.0000 1.2086 2.7141 29 1 0.4791 0.2882 2.8037 30 1 1.5698 -1.3713 4.2879 31 1 3.0911 -0.4515 4.1989 32 1 2.6852 -1.1511 7.7912 33 1 3.0883 0.9953 -1.9693 34 1 3.9081 -0.1651 -3.9804 35 1 5.8016 -2.7693 -4.1049 36 1 5.5650 -4.1030 -5.2593 37 1 4.9630 -4.2529 -3.5907 38 1 1.8903 -3.7167 -2.7536 39 1 1.0772 -2.5586 -0.7384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191025298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:25 Heat of formation + Delta-G solvation = -83.470800 kcal Electronic energy + Delta-G solvation = -20574.916095 eV Core-core repulsion = 17313.644832 eV Total energy + Delta-G solvation = -3261.271263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.49164 -38.12699 -36.97754 -35.80372 -35.45632 -32.94984 -32.09215 -30.84644 -30.16792 -27.30796 -25.53696 -23.90858 -23.38846 -22.19525 -20.02280 -18.82274 -18.68709 -17.52368 -17.18395 -17.09023 -16.52496 -16.45105 -15.85621 -15.60395 -15.55731 -15.24981 -14.64563 -14.35724 -14.25259 -14.10545 -13.92674 -13.88391 -13.54740 -13.43578 -13.13273 -13.03108 -12.98484 -12.84430 -12.63808 -12.36686 -12.20230 -12.08988 -12.01606 -11.73862 -11.57600 -11.24769 -10.79452 -10.62755 -10.10932 -10.03843 -8.67760 -8.24763 -6.38070 -0.85209 -0.34184 0.29690 0.81723 1.40314 1.40509 1.53799 1.67491 1.92989 2.39123 2.46539 3.04357 3.08822 3.20136 3.40672 3.66735 3.92710 3.97939 4.12832 4.13623 4.22928 4.24520 4.34244 4.36712 4.50054 4.64134 4.69447 4.75014 4.87815 4.96295 4.99212 5.05632 5.08556 5.16829 5.37110 5.43522 5.48437 5.72590 5.80856 6.09683 6.76647 7.31647 8.87177 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.035407 B = 0.002296 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.608001 B =12193.814914 C =12465.382581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.019 4.019 3 H 0.105 0.895 4 S -0.294 6.294 5 C -0.050 4.050 6 C 0.045 3.955 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.971 3.029 12 H -0.259 1.259 13 H -0.278 1.278 14 H -0.278 1.278 15 C -0.019 4.019 16 C -0.133 4.133 17 C -0.029 4.029 18 C -0.664 4.664 19 S 2.512 3.488 20 C -0.628 4.628 21 O -0.973 6.973 22 O -0.976 6.976 23 C -0.032 4.032 24 C -0.134 4.134 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.078 0.922 30 H -0.004 1.004 31 H -0.005 1.005 32 H 0.265 0.735 33 H 0.151 0.849 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -1.844 -24.161 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 H 0.124 0.876 4 S -0.064 6.064 5 C -0.198 4.198 6 C 0.007 3.993 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.197 4.197 10 N -0.571 5.571 11 Si 0.795 3.205 12 H -0.183 1.183 13 H -0.204 1.204 14 H -0.203 1.203 15 C -0.020 4.020 16 C -0.153 4.153 17 C -0.048 4.048 18 C -0.750 4.750 19 S 2.695 3.305 20 C -0.782 4.782 21 O -0.970 6.970 22 O -0.974 6.974 23 C -0.051 4.051 24 C -0.154 4.154 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.169 0.831 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.173 0.827 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.536 -2.900 -24.721 25.140 hybrid contribution -0.642 1.477 1.977 2.550 sum 2.894 -1.423 -22.744 22.971 Atomic orbital electron populations 1.22079 0.91252 1.03614 1.03124 1.22179 0.99801 1.01304 0.91437 0.87636 1.87101 1.76622 1.40648 1.01999 1.23359 1.02677 0.99173 0.94579 1.18665 0.95235 0.95358 0.90061 1.21572 1.35802 1.09004 0.91609 0.91487 1.26015 0.95016 0.96753 1.01944 1.70113 1.40608 1.26047 1.20356 0.85315 0.78161 0.78756 0.78298 1.18280 1.20361 1.20338 1.19717 0.94772 0.94322 0.93202 1.21430 0.97930 1.01599 0.94356 1.21188 0.95436 0.92238 0.95908 1.30708 1.14954 1.07172 1.22180 1.04700 0.78086 0.74016 0.73689 1.30061 1.18441 1.14908 1.14774 1.93535 1.87344 1.56964 1.59202 1.93537 1.60018 1.59450 1.84373 1.21122 0.92181 1.00548 0.91227 1.21328 1.01367 0.94502 0.98233 0.92029 0.89911 0.91341 0.90670 0.90356 0.98547 0.98640 0.92570 0.83126 0.81955 0.82918 0.82688 0.83264 0.82722 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.91 71.98 0.64 -2.54 16 2 C -0.02 -0.48 3.01 29.85 0.09 -0.39 16 3 H 0.11 2.39 7.88 -2.39 -0.02 2.38 16 4 S -0.29 -10.27 20.76 -56.49 -1.17 -11.44 16 5 C -0.05 -2.02 5.57 71.98 0.40 -1.62 16 6 C 0.05 2.38 4.98 29.85 0.15 2.53 16 7 C -0.54 -30.04 9.11 25.60 0.23 -29.80 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.00 0.07 5.46 84.66 0.46 0.53 16 10 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 11 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 15 C -0.02 -0.43 4.78 -19.87 -0.09 -0.52 16 16 C -0.13 -2.56 9.67 22.27 0.22 -2.34 16 17 C -0.03 -0.50 9.47 22.27 0.21 -0.29 16 18 C -0.66 -11.64 5.66 22.27 0.13 -11.52 16 19 S 2.51 35.68 5.80 -56.49 -0.33 35.35 16 20 C -0.63 -2.93 10.80 113.37 1.22 -1.70 16 21 O -0.97 -19.73 17.13 -127.65 -2.19 -21.92 16 22 O -0.98 -20.80 17.12 -127.65 -2.19 -22.98 16 23 C -0.03 -0.63 9.47 22.27 0.21 -0.42 16 24 C -0.13 -3.05 8.78 22.27 0.20 -2.86 16 25 H 0.06 1.46 6.92 -2.39 -0.02 1.44 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.56 7.39 -2.39 -0.02 1.54 16 28 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.08 2.99 7.14 -2.39 -0.02 2.97 16 30 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 32 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.15 2.25 7.95 -2.91 -0.02 2.23 16 34 H 0.16 2.03 7.57 -2.91 -0.02 2.01 16 35 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.16 2.51 7.56 -2.91 -0.02 2.48 16 39 H 0.13 3.07 7.58 -2.91 -0.02 3.05 16 Total: -1.00 -76.81 353.66 1.54 -75.28 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.03 Total: 7.37 kcal Atomic # 6 Polarization: -55.01 SS G_CDS: 4.06 Total: -50.95 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.28 Total: -55.98 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -4.37 Total: -44.90 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 25.41 SS G_CDS: -1.50 Total: 23.91 kcal Total: -76.81 1.54 -75.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191025298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.193 kcal (2) G-P(sol) polarization free energy of solvation -76.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds