Wall clock time and date at job start Tue Mar 31 2020 10:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36007 * 117.00344 * 2 1 4 4 C 1.38604 * 120.05534 * 0.02562 * 3 2 1 5 5 C 1.38269 * 120.10956 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.21856 * 359.95747 * 5 4 3 7 7 C 1.38598 * 120.10670 * 0.02562 * 6 5 4 8 8 O 1.36015 * 120.05576 * 180.02562 * 7 6 5 9 9 C 1.42902 * 116.99706 * 359.97438 * 8 7 6 10 10 C 1.39178 * 120.05507 * 179.97438 * 3 2 1 11 11 S 1.76196 * 120.10995 * 0.26063 * 10 3 2 12 12 C 1.81407 * 102.99850 * 269.72024 * 11 10 3 13 13 C 1.52996 * 109.46990 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46977 * 179.97438 * 13 12 11 15 15 S 1.81005 * 109.47145 * 180.02562 * 14 13 12 16 16 C 1.76195 * 99.99988 * 180.02562 * 15 14 13 17 17 H 1.08008 * 120.00262 * 359.97438 * 16 15 14 18 18 C 1.38801 * 119.99903 * 180.02562 * 16 15 14 19 19 N 1.31626 * 119.99972 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99896 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47367 * 59.99536 * 20 18 16 22 22 H 1.48497 * 109.47271 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47199 * 299.99841 * 20 18 16 24 24 H 1.08997 * 109.46902 * 59.99968 * 1 2 3 25 25 H 1.09003 * 109.47167 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46861 * 299.99978 * 1 2 3 27 27 H 1.08004 * 119.94399 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.89139 * 179.97438 * 5 4 3 29 29 H 1.07993 * 119.94497 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47292 * 300.00241 * 9 8 7 31 31 H 1.08998 * 109.47042 * 59.99989 * 9 8 7 32 32 H 1.08995 * 109.46954 * 180.02562 * 9 8 7 33 33 H 1.08996 * 109.47151 * 299.99872 * 12 11 10 34 34 H 1.08998 * 109.47124 * 59.99599 * 12 11 10 35 35 H 1.08996 * 109.47225 * 300.00018 * 13 12 11 36 36 H 1.08998 * 109.47359 * 59.99933 * 13 12 11 37 37 H 1.09005 * 109.46933 * 300.00048 * 14 13 12 38 38 H 1.08998 * 109.47129 * 59.99794 * 14 13 12 39 39 H 0.97001 * 119.99619 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.2929 2.3750 0.0005 5 6 1.9195 3.6075 0.0000 6 6 3.2999 3.6864 -0.0002 7 6 4.0624 2.5290 -0.0004 8 8 5.4203 2.6078 0.0000 9 6 5.9941 3.9165 0.0000 10 6 3.4364 1.2859 0.0005 11 16 4.4002 -0.1891 -0.0057 12 6 4.6303 -0.5336 1.7604 13 6 5.4620 -1.8069 1.9275 14 6 5.6566 -2.0971 3.4170 15 16 6.6412 -3.6030 3.6147 16 6 6.7074 -3.6967 5.3729 17 1 6.2176 -2.9437 5.9727 18 6 7.3900 -4.7375 5.9872 19 7 7.9873 -5.6548 5.2563 20 14 7.4608 -4.8364 7.8513 21 1 6.0825 -4.9413 8.3942 22 1 8.2443 -6.0317 8.2542 23 1 8.1122 -3.6144 8.3875 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.2143 2.3185 0.0014 28 1 1.3288 4.5117 0.0000 29 1 3.7848 4.6514 -0.0010 30 1 5.6697 4.4555 -0.8901 31 1 5.6692 4.4557 0.8898 32 1 7.0812 3.8365 -0.0002 33 1 5.1480 0.3031 2.2294 34 1 3.6580 -0.6704 2.2336 35 1 4.9439 -2.6434 1.4586 36 1 6.4343 -1.6704 1.4542 37 1 6.1750 -1.2604 3.8855 38 1 4.6845 -2.2333 3.8907 39 1 8.4640 -6.3824 5.6857 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191252985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:44 Heat of formation + Delta-G solvation = -78.821331 kcal Electronic energy + Delta-G solvation = -20604.899756 eV Core-core repulsion = 17343.830109 eV Total energy + Delta-G solvation = -3261.069647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42366 -40.03274 -37.38239 -35.68782 -34.60331 -32.20025 -30.60852 -28.70325 -28.53627 -27.61776 -27.52598 -24.12181 -22.78264 -22.75356 -19.88081 -19.56944 -17.98828 -17.82117 -17.36744 -16.98854 -16.89948 -16.54880 -16.51160 -16.42586 -15.80746 -15.73842 -14.99354 -14.84275 -14.23351 -13.96651 -13.87214 -13.72736 -13.35539 -13.32094 -13.07675 -12.91358 -12.72298 -12.45753 -12.41721 -12.40945 -12.00636 -11.97987 -11.67782 -11.48091 -11.22154 -11.13950 -10.35881 -9.53062 -9.18167 -8.69160 -8.58437 -8.37335 -6.14730 -0.07991 0.36044 0.81465 1.31318 1.41201 1.47938 1.67370 1.76921 1.97079 2.27549 2.62523 2.68197 2.96627 3.30144 3.83437 3.85421 3.94397 4.02253 4.02458 4.14858 4.19873 4.32977 4.34564 4.39089 4.39614 4.39654 4.50267 4.60622 4.71259 4.73931 4.75321 5.00654 5.06489 5.13456 5.16868 5.34103 5.38826 5.45478 6.17612 6.29467 6.33042 7.04086 8.72096 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.002696 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.651733 B =10383.558381 C =11045.843650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.192 3.808 4 C -0.255 4.255 5 C -0.009 4.009 6 C -0.255 4.255 7 C 0.192 3.808 8 O -0.321 6.321 9 C 0.015 3.985 10 C -0.223 4.223 11 S -0.147 6.147 12 C -0.076 4.076 13 C -0.068 4.068 14 C -0.082 4.082 15 S -0.192 6.192 16 C -0.540 4.540 17 H 0.074 0.926 18 C 0.015 3.985 19 N -0.908 5.908 20 Si 0.996 3.004 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.264 1.264 24 H 0.074 0.926 25 H 0.113 0.887 26 H 0.070 0.930 27 H 0.161 0.839 28 H 0.171 0.829 29 H 0.160 0.840 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 23.789 -11.973 30.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.233 6.233 3 C 0.143 3.857 4 C -0.276 4.276 5 C -0.027 4.027 6 C -0.276 4.276 7 C 0.143 3.857 8 O -0.233 6.233 9 C -0.079 4.079 10 C -0.336 4.336 11 S 0.087 5.913 12 C -0.225 4.225 13 C -0.108 4.108 14 C -0.233 4.233 15 S 0.036 5.964 16 C -0.688 4.688 17 H 0.092 0.908 18 C -0.190 4.190 19 N -0.544 5.544 20 Si 0.818 3.182 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.189 1.189 24 H 0.093 0.907 25 H 0.132 0.868 26 H 0.088 0.912 27 H 0.178 0.822 28 H 0.188 0.812 29 H 0.178 0.822 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.379 21.939 -13.647 29.569 hybrid contribution -0.880 1.362 2.855 3.284 sum -15.259 23.301 -10.791 29.870 Atomic orbital electron populations 1.23444 0.75998 1.05687 1.02780 1.86271 1.23650 1.26288 1.87107 1.18903 0.90557 0.85820 0.90461 1.21487 1.01508 0.91280 1.13292 1.21350 0.93587 0.98219 0.89573 1.21483 0.95386 0.97403 1.13294 1.18906 0.83562 0.92815 0.90467 1.86273 1.16752 1.33182 1.87112 1.23443 1.00180 0.81505 1.02780 1.20177 0.93589 0.95625 1.24235 1.85320 1.67821 1.28350 1.09807 1.23409 1.02825 1.00526 0.95758 1.20832 1.00119 0.95920 0.93892 1.23149 1.01617 0.99557 0.98965 1.84680 1.69161 1.31828 1.10722 1.23010 1.40182 1.14731 0.90889 0.90833 1.26103 0.93805 0.94004 1.05092 1.70154 1.33017 1.13156 1.38055 0.85040 0.78900 0.78241 0.76061 1.18848 1.19854 1.18864 0.90738 0.86838 0.91168 0.82203 0.81179 0.82205 0.90737 0.91168 0.86842 0.90397 0.90402 0.91165 0.91175 0.91686 0.91681 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -7.78 9.86 -93.63 -0.92 -8.70 16 3 C 0.19 4.63 6.68 22.58 0.15 4.78 16 4 C -0.26 -4.14 9.04 22.36 0.20 -3.94 16 5 C -0.01 -0.12 10.04 22.28 0.22 0.10 16 6 C -0.26 -4.14 9.04 22.36 0.20 -3.94 16 7 C 0.19 4.62 6.68 22.58 0.15 4.77 16 8 O -0.32 -7.78 9.86 -93.72 -0.92 -8.70 16 9 C 0.02 0.20 9.81 113.37 1.11 1.31 16 10 C -0.22 -6.31 5.72 22.72 0.13 -6.18 16 11 S -0.15 -4.81 20.64 -56.49 -1.17 -5.98 16 12 C -0.08 -2.49 5.90 71.98 0.42 -2.07 16 13 C -0.07 -2.54 5.22 30.59 0.16 -2.38 16 14 C -0.08 -3.57 5.67 71.98 0.41 -3.16 16 15 S -0.19 -10.73 21.44 -56.49 -1.21 -11.95 16 16 C -0.54 -32.14 9.50 67.95 0.65 -31.49 16 17 H 0.07 4.19 7.80 -2.91 -0.02 4.17 16 18 C 0.01 0.87 5.49 84.86 0.47 1.33 16 19 N -0.91 -56.02 13.22 21.65 0.29 -55.73 16 20 Si 1.00 44.69 29.55 68.60 2.03 46.71 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H 0.07 0.70 7.66 -2.39 -0.02 0.69 16 25 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 0.72 7.66 -2.39 -0.02 0.71 16 27 H 0.16 1.60 6.29 -2.91 -0.02 1.58 16 28 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 29 H 0.16 1.60 6.29 -2.91 -0.02 1.58 16 30 H 0.07 0.70 7.66 -2.39 -0.02 0.69 16 31 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.06 2.75 8.14 -2.39 -0.02 2.74 16 38 H 0.06 2.76 8.14 -2.40 -0.02 2.74 16 39 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -76.74 357.05 4.52 -72.22 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.04 Total: 11.68 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 5.39 Total: -39.56 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.29 Total: -55.73 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -1.85 Total: -17.40 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -15.55 SS G_CDS: -2.38 Total: -17.93 kcal Total: -76.74 4.52 -72.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191252985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.599 kcal (2) G-P(sol) polarization free energy of solvation -76.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds