Wall clock time and date at job start Tue Mar 31 2020 10:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48493 * 109.47207 * 269.99841 * 3 2 1 5 5 H 1.48496 * 109.47085 * 30.00291 * 3 2 1 6 6 H 1.48507 * 109.46891 * 150.00217 * 3 2 1 7 7 C 1.37878 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47243 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47228 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00143 * 180.02562 * 11 10 9 13 13 O 1.21595 * 119.99859 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00409 * 180.02562 * 12 11 10 15 15 C 1.40133 * 120.00114 * 185.31151 * 14 12 11 16 16 C 1.38837 * 120.00259 * 33.30763 * 15 14 12 17 17 C 1.38176 * 120.07160 * 180.02562 * 16 15 14 18 18 C 1.38548 * 120.11611 * 0.27746 * 17 16 15 19 19 C 1.39277 * 119.94395 * 359.45026 * 18 17 16 20 20 C 1.38502 * 119.89372 * 0.54349 * 19 18 17 21 21 O 1.36513 * 108.64509 * 180.35356 * 19 18 17 22 22 C 1.44339 * 105.37365 * 342.29951 * 21 19 18 23 23 F 1.39902 * 111.04020 * 268.97595 * 22 21 19 24 24 F 1.39895 * 110.40333 * 146.04953 * 22 21 19 25 25 O 1.36602 * 131.44368 * 179.72712 * 18 17 16 26 26 H 0.97007 * 119.99857 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47182 * 59.99891 * 9 7 2 28 28 H 1.08999 * 109.46682 * 300.00008 * 9 7 2 29 29 H 1.09006 * 109.46988 * 60.00077 * 10 9 7 30 30 H 1.08992 * 109.46912 * 300.00201 * 10 9 7 31 31 H 0.97002 * 119.99992 * 0.02562 * 11 10 9 32 32 H 0.96997 * 119.99464 * 5.31848 * 14 12 11 33 33 H 1.08001 * 119.96332 * 359.97438 * 16 15 14 34 34 H 1.07996 * 119.94181 * 179.97438 * 17 16 15 35 35 H 1.08002 * 120.01176 * 179.70479 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 2.1864 -6.0980 0.0007 13 8 3.4023 -6.0981 0.0012 14 7 1.5125 -7.2653 0.0008 15 6 2.2086 -8.4762 0.1138 16 6 3.3685 -8.5419 0.8739 17 6 4.0563 -9.7351 0.9858 18 6 3.5939 -10.8677 0.3355 19 6 2.4274 -10.8063 -0.4231 20 6 1.7387 -9.6099 -0.5346 21 8 2.1834 -12.0422 -0.9491 22 6 3.4347 -12.7546 -0.8489 23 9 4.2029 -12.5857 -2.0060 24 9 3.2045 -14.1132 -0.6075 25 8 4.0822 -12.1423 0.2819 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8897 29 1 2.8718 -3.6045 0.8895 30 1 2.8717 -3.6044 -0.8904 31 1 0.5426 -4.9308 0.0000 32 1 0.5457 -7.2670 -0.0775 33 1 3.7341 -7.6592 1.3775 34 1 4.9586 -9.7837 1.5773 35 1 0.8366 -9.5590 -1.1262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273191154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:47 Heat of formation + Delta-G solvation = -167.188611 kcal Electronic energy + Delta-G solvation = -24753.292774 eV Core-core repulsion = 20388.257633 eV Total energy + Delta-G solvation = -4365.035141 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.81878 -48.27875 -42.54372 -40.48662 -38.08619 -37.29318 -35.11764 -34.51278 -32.92605 -31.01796 -30.05759 -28.67575 -25.56766 -24.96338 -23.81151 -23.30941 -21.45525 -20.93862 -19.63488 -19.36460 -19.17374 -18.39341 -17.98288 -16.73387 -16.41347 -16.11305 -15.54385 -15.49136 -15.02290 -14.99261 -14.72964 -14.56635 -14.52793 -14.48053 -14.22733 -14.10246 -13.79276 -13.57613 -13.38801 -13.24749 -12.39033 -12.32466 -11.78054 -11.29357 -11.11068 -10.70125 -10.51480 -10.35360 -10.15569 -9.68532 -9.36335 -9.25896 -8.75111 -8.47953 -8.19465 -6.15972 -4.19095 0.60720 0.72573 1.30534 1.79932 2.62458 2.96158 3.25629 3.32235 3.36064 3.40525 3.53426 3.63593 3.86734 4.21654 4.39421 4.39887 4.57162 4.76416 4.95473 5.16142 5.21538 5.45850 5.56881 5.81727 5.94539 6.12050 6.14901 6.24455 6.57721 6.62457 6.72174 6.87223 7.44753 7.52066 7.82096 8.00552 8.20811 8.58585 8.86818 9.46249 10.95555 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.048455 B = 0.002033 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.712768 B =13768.282144 C =13966.709044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.138 3.862 11 N -0.727 5.727 12 C 0.698 3.302 13 O -0.576 6.576 14 N -0.688 5.688 15 C 0.203 3.797 16 C -0.102 4.102 17 C -0.056 4.056 18 C -0.003 4.003 19 C 0.047 3.953 20 C -0.119 4.119 21 O -0.287 6.287 22 C 0.570 3.430 23 F -0.154 7.154 24 F -0.120 7.120 25 O -0.287 6.287 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.397 0.603 32 H 0.411 0.589 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 -24.022 0.490 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.015 3.985 11 N -0.380 5.380 12 C 0.398 3.602 13 O -0.453 6.453 14 N -0.336 5.336 15 C 0.106 3.894 16 C -0.123 4.123 17 C -0.076 4.076 18 C -0.047 4.047 19 C 0.002 3.998 20 C -0.140 4.140 21 O -0.207 6.207 22 C 0.461 3.539 23 F -0.136 7.136 24 F -0.101 7.101 25 O -0.207 6.207 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.231 0.769 32 H 0.247 0.753 33 H 0.179 0.821 34 H 0.165 0.835 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.068 -24.000 0.510 24.200 hybrid contribution -0.551 0.431 -0.369 0.791 sum 2.517 -23.569 0.141 23.703 Atomic orbital electron populations 1.69951 1.06104 1.26973 1.50214 1.24998 0.94910 0.99474 0.94907 0.86496 0.79833 0.82903 0.78239 1.20534 1.21161 1.19688 1.21021 0.93278 0.90246 1.51577 0.92154 1.19339 0.94229 0.90995 0.97946 1.21726 0.95780 0.79883 1.01082 1.45606 1.10240 1.05092 1.77077 1.16025 0.85716 0.80216 0.78256 1.90934 1.11303 1.86061 1.56982 1.42745 1.10392 1.03163 1.77310 1.16990 0.93638 0.84398 0.94377 1.21190 0.94951 0.97805 0.98331 1.20014 1.00603 0.87384 0.99560 1.19512 0.95518 0.84718 1.04982 1.19030 0.96317 0.85297 0.99142 1.19575 1.03649 0.87721 1.03069 1.87680 1.29644 1.23746 1.79616 1.21945 0.76965 0.78083 0.76923 1.93277 1.75113 1.95240 1.49944 1.93238 1.93824 1.28955 1.94064 1.87627 1.64670 1.23763 1.44615 0.92787 0.95881 0.95851 0.92297 0.92347 0.76933 0.75340 0.82095 0.83469 0.83540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -13.86 9.11 -34.44 -0.31 -14.17 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.14 2.66 5.61 -4.04 -0.02 2.64 16 11 N -0.73 -11.00 5.56 -65.23 -0.36 -11.36 16 12 C 0.70 10.28 8.30 -86.92 -0.72 9.56 16 13 O -0.58 -10.47 14.03 5.28 0.07 -10.39 16 14 N -0.69 -7.22 5.35 -14.20 -0.08 -7.29 16 15 C 0.20 2.18 6.28 -83.63 -0.53 1.65 16 16 C -0.10 -1.14 8.65 -39.38 -0.34 -1.48 16 17 C -0.06 -0.56 10.05 -39.49 -0.40 -0.96 16 18 C 0.00 -0.03 7.15 -39.08 -0.28 -0.31 16 19 C 0.05 0.51 7.14 -39.10 -0.28 0.23 16 20 C -0.12 -1.13 9.97 -39.28 -0.39 -1.52 16 21 O -0.29 -3.22 11.37 -45.73 -0.52 -3.74 16 22 C 0.57 6.17 3.70 101.05 0.37 6.54 16 23 F -0.15 -1.69 17.58 2.25 0.04 -1.65 16 24 F -0.12 -1.20 17.56 2.25 0.04 -1.16 16 25 O -0.29 -3.27 11.35 -46.03 -0.52 -3.79 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.40 4.97 8.49 -40.82 -0.35 4.62 16 32 H 0.41 2.89 8.83 -40.82 -0.36 2.53 16 33 H 0.16 1.98 6.40 -52.49 -0.34 1.65 16 34 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -30.64 321.92 -7.02 -37.66 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -3.12 Total: 1.86 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -3.14 Total: 3.82 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.30 Total: -43.19 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.97 Total: -17.92 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.64 -7.02 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273191154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.530 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds