Wall clock time and date at job start Tue Mar 31 2020 10:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00114 * 2 1 4 4 H 1.48493 * 109.47207 * 269.99841 * 3 2 1 5 5 H 1.48496 * 109.47085 * 30.00291 * 3 2 1 6 6 H 1.48507 * 109.46891 * 150.00217 * 3 2 1 7 7 C 1.37878 * 119.99580 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47243 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.47228 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00143 * 180.02562 * 11 10 9 13 13 O 1.21595 * 119.99859 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00409 * 180.02562 * 12 11 10 15 15 C 1.40133 * 120.00114 * 185.31151 * 14 12 11 16 16 C 1.38837 * 120.00259 * 33.30763 * 15 14 12 17 17 C 1.38176 * 120.07160 * 180.02562 * 16 15 14 18 18 C 1.38548 * 120.11611 * 0.27746 * 17 16 15 19 19 C 1.39277 * 119.94395 * 359.45026 * 18 17 16 20 20 C 1.38502 * 119.89372 * 0.54349 * 19 18 17 21 21 O 1.36513 * 108.64509 * 180.35356 * 19 18 17 22 22 C 1.44339 * 105.37365 * 342.29951 * 21 19 18 23 23 F 1.39902 * 111.04020 * 268.97595 * 22 21 19 24 24 F 1.39895 * 110.40333 * 146.04953 * 22 21 19 25 25 O 1.36602 * 131.44368 * 179.72712 * 18 17 16 26 26 H 0.97007 * 119.99857 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47182 * 59.99891 * 9 7 2 28 28 H 1.08999 * 109.46682 * 300.00008 * 9 7 2 29 29 H 1.09006 * 109.46988 * 60.00077 * 10 9 7 30 30 H 1.08992 * 109.46912 * 300.00201 * 10 9 7 31 31 H 0.97002 * 119.99992 * 0.02562 * 11 10 9 32 32 H 0.96997 * 119.99464 * 5.31848 * 14 12 11 33 33 H 1.08001 * 119.96332 * 359.97438 * 16 15 14 34 34 H 1.07996 * 119.94181 * 179.97438 * 17 16 15 35 35 H 1.08002 * 120.01176 * 179.70479 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5126 -4.9308 0.0001 12 6 2.1864 -6.0980 0.0007 13 8 3.4023 -6.0981 0.0012 14 7 1.5125 -7.2653 0.0008 15 6 2.2086 -8.4762 0.1138 16 6 3.3685 -8.5419 0.8739 17 6 4.0563 -9.7351 0.9858 18 6 3.5939 -10.8677 0.3355 19 6 2.4274 -10.8063 -0.4231 20 6 1.7387 -9.6099 -0.5346 21 8 2.1834 -12.0422 -0.9491 22 6 3.4347 -12.7546 -0.8489 23 9 4.2029 -12.5857 -2.0060 24 9 3.2045 -14.1132 -0.6075 25 8 4.0822 -12.1423 0.2819 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 -0.8903 28 1 0.6246 -2.5570 0.8897 29 1 2.8718 -3.6045 0.8895 30 1 2.8717 -3.6044 -0.8904 31 1 0.5426 -4.9308 0.0000 32 1 0.5457 -7.2670 -0.0775 33 1 3.7341 -7.6592 1.3775 34 1 4.9586 -9.7837 1.5773 35 1 0.8366 -9.5590 -1.1262 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273191154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:47 Heat of formation + Delta-G solvation = -187.894310 kcal Electronic energy + Delta-G solvation = -24754.190640 eV Core-core repulsion = 20388.257633 eV Total energy + Delta-G solvation = -4365.933007 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.091 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.65422 -49.11512 -43.38518 -41.58445 -39.07496 -38.14702 -36.61424 -35.56406 -34.77335 -31.91444 -31.56117 -29.77509 -26.79185 -26.32871 -24.76197 -24.23452 -22.96637 -22.24577 -20.50078 -20.29019 -20.07883 -19.48987 -18.84520 -18.38522 -17.64783 -17.09837 -16.63544 -16.49613 -16.39830 -16.03321 -15.85749 -15.82207 -15.36616 -15.25140 -15.19802 -15.12403 -15.07679 -14.75238 -14.42318 -14.26792 -14.13075 -13.32557 -13.18640 -12.91575 -12.57933 -12.50169 -12.22175 -11.67713 -11.51572 -11.33223 -11.16358 -10.57969 -10.12169 -10.00719 -9.11868 -8.21942 -6.31275 -0.26150 -0.07042 0.46668 0.93183 1.44264 1.44544 1.54599 1.59776 1.91704 2.42768 2.44953 2.68350 2.79734 3.06525 3.13688 3.19022 3.56596 3.76371 3.94193 4.16644 4.29353 4.50662 4.56589 4.69032 4.78985 4.91308 5.03478 5.07629 5.25009 5.29857 5.51528 5.63661 5.70890 5.80259 5.92117 6.19406 6.82475 6.95523 7.37961 7.42366 8.89697 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.048455 B = 0.002033 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.712768 B =13768.282144 C =13966.709044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.022 3.978 10 C 0.159 3.841 11 N -0.722 5.722 12 C 0.701 3.299 13 O -0.611 6.611 14 N -0.668 5.668 15 C 0.192 3.808 16 C -0.110 4.110 17 C -0.051 4.051 18 C -0.013 4.013 19 C 0.035 3.965 20 C -0.103 4.103 21 O -0.290 6.290 22 C 0.570 3.430 23 F -0.156 7.156 24 F -0.115 7.115 25 O -0.293 6.293 26 H 0.265 0.735 27 H 0.010 0.990 28 H 0.011 0.989 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.411 0.589 32 H 0.429 0.571 33 H 0.149 0.851 34 H 0.167 0.833 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.131 -24.551 0.368 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.035 3.965 11 N -0.376 5.376 12 C 0.402 3.598 13 O -0.490 6.490 14 N -0.317 5.317 15 C 0.095 3.905 16 C -0.131 4.131 17 C -0.070 4.070 18 C -0.057 4.057 19 C -0.009 4.009 20 C -0.124 4.124 21 O -0.210 6.210 22 C 0.462 3.538 23 F -0.138 7.138 24 F -0.096 7.096 25 O -0.213 6.213 26 H 0.074 0.926 27 H 0.028 0.972 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.247 0.753 32 H 0.269 0.731 33 H 0.166 0.834 34 H 0.185 0.815 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.013 -24.576 0.388 24.763 hybrid contribution -0.550 0.498 -0.323 0.809 sum 2.464 -24.078 0.064 24.203 Atomic orbital electron populations 1.70050 1.07460 1.27898 1.51185 1.25834 0.95762 1.02986 0.94608 0.85490 0.78701 0.78719 0.78417 1.19949 1.20778 1.19005 1.21475 0.93670 0.91884 1.51191 0.92157 1.19147 0.94321 0.91587 0.96544 1.21155 0.94597 0.80514 1.00215 1.45219 1.10788 1.04138 1.77491 1.16003 0.85232 0.80817 0.77758 1.90919 1.12996 1.86684 1.58409 1.42382 1.11212 1.01828 1.76300 1.17068 0.93851 0.84568 0.94986 1.21164 0.95436 0.97772 0.98721 1.20150 1.00995 0.86621 0.99251 1.19709 0.95831 0.84832 1.05327 1.19231 0.96637 0.85615 0.99449 1.19713 1.03994 0.86543 1.02147 1.87668 1.29722 1.23899 1.79696 1.21933 0.76884 0.78230 0.76776 1.93272 1.75184 1.95274 1.50043 1.93247 1.93780 1.28592 1.94021 1.87613 1.64852 1.23978 1.44820 0.92639 0.97194 0.97087 0.93076 0.93352 0.75280 0.73107 0.83362 0.81522 0.80813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.53 13.29 21.45 0.28 -52.25 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.96 42.27 29.54 68.60 2.03 44.30 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.54 -28.91 9.11 25.60 0.23 -28.67 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.01 5.09 29.85 0.15 1.16 16 10 C 0.16 6.14 5.61 86.38 0.48 6.63 16 11 N -0.72 -21.17 5.56 -478.54 -2.66 -23.83 16 12 C 0.70 19.85 8.30 179.06 1.49 21.33 16 13 O -0.61 -21.87 14.03 -4.01 -0.06 -21.93 16 14 N -0.67 -12.68 5.35 -317.10 -1.70 -14.38 16 15 C 0.19 3.77 6.28 38.09 0.24 4.01 16 16 C -0.11 -2.35 8.65 22.40 0.19 -2.15 16 17 C -0.05 -0.96 10.05 22.33 0.22 -0.74 16 18 C -0.01 -0.27 7.15 22.59 0.16 -0.11 16 19 C 0.03 0.70 7.14 22.58 0.16 0.86 16 20 C -0.10 -1.72 9.97 22.47 0.22 -1.49 16 21 O -0.29 -6.05 11.37 -76.20 -0.87 -6.92 16 22 C 0.57 11.69 3.70 113.37 0.42 12.11 16 23 F -0.16 -3.27 17.58 44.97 0.79 -2.48 16 24 F -0.12 -2.18 17.56 44.97 0.79 -1.39 16 25 O -0.29 -6.33 11.35 -77.26 -0.88 -7.21 16 26 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 27 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.41 9.74 8.49 -92.71 -0.79 8.95 16 32 H 0.43 4.90 8.83 -92.71 -0.82 4.08 16 33 H 0.15 3.61 6.40 -2.91 -0.02 3.59 16 34 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -64.86 321.92 1.75 -63.11 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -0.42 Total: 9.20 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 4.44 Total: 13.77 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -4.07 Total: -90.46 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.80 Total: -36.05 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 1.58 Total: -3.87 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -64.86 1.75 -63.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273191154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.787 kcal (2) G-P(sol) polarization free energy of solvation -64.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds