Wall clock time and date at job start Tue Mar 31 2020 10:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99490 * 2 1 4 4 C 1.53004 * 109.47069 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46883 * 65.00086 * 4 3 2 6 6 C 1.36946 * 119.99715 * 261.95130 * 5 4 3 7 7 H 1.07994 * 120.00016 * 186.15873 * 6 5 4 8 8 C 1.38810 * 119.99978 * 6.16544 * 6 5 4 9 9 N 1.31622 * 119.99955 * 15.49868 * 8 6 5 10 10 Si 1.86793 * 119.99898 * 195.49727 * 8 6 5 11 11 H 1.48500 * 109.47165 * 59.99994 * 10 8 6 12 12 H 1.48503 * 109.47047 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47446 * 299.99783 * 10 8 6 14 14 C 1.46498 * 120.00380 * 81.95684 * 5 4 3 15 15 C 1.50693 * 109.47400 * 82.92461 * 14 5 4 16 16 C 1.38372 * 120.00610 * 86.01793 * 15 14 5 17 17 Cl 1.73596 * 120.01608 * 359.96132 * 16 15 14 18 18 C 1.38331 * 119.97185 * 179.97438 * 16 15 14 19 19 C 1.38236 * 119.99154 * 0.02562 * 18 16 15 20 20 C 1.38227 * 120.00979 * 359.97438 * 19 18 16 21 21 C 1.38194 * 120.00914 * 266.00244 * 15 14 5 22 22 N 1.48025 * 119.99138 * 0.02562 * 21 15 14 23 23 O 1.21797 * 119.99812 * 186.26896 * 22 21 15 24 24 O 1.21804 * 119.99794 * 6.26017 * 22 21 15 25 25 H 1.08997 * 109.47354 * 59.99987 * 1 2 3 26 26 H 1.09001 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46965 * 299.99423 * 1 2 3 28 28 H 1.08997 * 109.47188 * 59.99934 * 3 2 1 29 29 H 1.09001 * 109.47069 * 300.00141 * 3 2 1 30 30 H 1.08998 * 109.46745 * 305.00209 * 4 3 2 31 31 H 1.08998 * 109.47189 * 184.99454 * 4 3 2 32 32 H 0.97003 * 119.99614 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.46569 * 322.92584 * 14 5 4 34 34 H 1.09002 * 109.47112 * 202.92618 * 14 5 4 35 35 H 1.08010 * 120.00906 * 180.02562 * 18 16 15 36 36 H 1.07995 * 119.99444 * 179.97438 * 19 18 16 37 37 H 1.07995 * 119.98763 * 179.72248 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.2556 -0.7754 -1.2918 7 1 4.6743 -1.2138 -2.1855 8 6 4.0009 -1.5701 -0.1826 9 7 3.2239 -1.1246 0.7819 10 14 4.7610 -3.2719 -0.0587 11 1 6.2412 -3.1560 -0.0848 12 1 4.3364 -3.9124 1.2121 13 1 4.3091 -4.1006 -1.2051 14 6 4.1165 1.3778 -2.4632 15 6 5.4557 2.0687 -2.4512 16 6 6.5742 1.4185 -2.9421 17 17 6.4354 -0.1935 -3.5710 18 6 7.8030 2.0536 -2.9312 19 6 7.9132 3.3370 -2.4296 20 6 6.7955 3.9860 -1.9393 21 6 5.5670 3.3518 -1.9502 22 7 4.3706 4.0474 -1.4248 23 8 4.4439 5.2160 -1.0895 24 8 3.3129 3.4511 -1.3281 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6885 1.8464 0.8899 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5684 0.8409 31 1 3.9784 2.1767 0.0888 32 1 3.0462 -1.6799 1.5571 33 1 3.3228 2.1243 -2.4937 34 1 4.0463 0.7367 -3.3419 35 1 8.6764 1.5468 -3.3146 36 1 8.8726 3.8327 -2.4207 37 1 6.8828 4.9869 -1.5434 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316494024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:11 Heat of formation + Delta-G solvation = 30.098644 kcal Electronic energy + Delta-G solvation = -25547.972896 eV Core-core repulsion = 21743.289453 eV Total energy + Delta-G solvation = -3804.683443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.25784 -40.53166 -38.61943 -37.67360 -37.45532 -36.73609 -33.95353 -32.69943 -32.05607 -30.20715 -28.09687 -26.90851 -26.76230 -24.75324 -23.67118 -23.20162 -21.73830 -19.98179 -19.56167 -18.76725 -18.69430 -17.38892 -17.01110 -16.81439 -16.26566 -16.19005 -16.11030 -15.44809 -15.34466 -14.94269 -14.61887 -14.40371 -13.56028 -13.44142 -13.16308 -13.02414 -12.92546 -12.76825 -12.70267 -12.51982 -12.45759 -12.34229 -12.11747 -11.95062 -11.74315 -11.50056 -11.19088 -11.01157 -10.47016 -10.28779 -9.90475 -9.84613 -8.68492 -7.39605 -4.90305 -1.14396 -0.09975 0.35454 0.44698 1.14985 1.51349 1.53101 1.57825 2.24242 2.64929 3.37007 3.52771 3.55805 3.69529 3.75542 3.87565 3.95468 4.08463 4.42031 4.50352 4.62975 4.67401 4.79096 4.86832 4.91152 4.93707 4.95611 4.98946 5.02974 5.18658 5.27916 5.36131 5.58462 5.86342 5.97226 6.55671 6.67029 7.11480 7.38287 8.04953 8.45699 9.44607 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.007580 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.594464 B = 3693.171056 C = 5400.025201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.082 3.918 4 C 0.164 3.836 5 N -0.575 5.575 6 C -0.250 4.250 7 H 0.083 0.917 8 C -0.043 4.043 9 N -0.870 5.870 10 Si 0.941 3.059 11 H -0.285 1.285 12 H -0.301 1.301 13 H -0.289 1.289 14 C 0.150 3.850 15 C -0.036 4.036 16 C -0.044 4.044 17 Cl -0.047 7.047 18 C -0.052 4.052 19 C -0.098 4.098 20 C -0.053 4.053 21 C -0.054 4.054 22 N 0.033 4.967 23 O -0.169 6.169 24 O -0.183 6.183 25 H 0.025 0.975 26 H 0.070 0.930 27 H 0.029 0.971 28 H 0.011 0.989 29 H 0.020 0.980 30 H 0.098 0.902 31 H 0.010 0.990 32 H 0.236 0.764 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.180 0.820 36 H 0.202 0.798 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.836 9.540 -7.437 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.003 3.997 4 C 0.039 3.961 5 N -0.293 5.293 6 C -0.379 4.379 7 H 0.101 0.899 8 C -0.238 4.238 9 N -0.517 5.517 10 Si 0.772 3.228 11 H -0.211 1.211 12 H -0.228 1.228 13 H -0.215 1.215 14 C 0.022 3.978 15 C -0.042 4.042 16 C -0.072 4.072 17 Cl -0.018 7.018 18 C -0.071 4.071 19 C -0.117 4.117 20 C -0.072 4.072 21 C -0.138 4.138 22 N 0.544 4.456 23 O -0.384 6.384 24 O -0.389 6.389 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.029 0.971 29 H 0.038 0.962 30 H 0.115 0.885 31 H 0.028 0.972 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.197 0.803 36 H 0.219 0.781 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 10.348 8.729 -7.562 15.506 hybrid contribution -0.894 -0.835 0.403 1.288 sum 9.454 7.894 -7.158 14.245 Atomic orbital electron populations 1.22717 0.85905 1.01046 0.98251 1.88830 1.15053 1.25777 1.94406 1.22456 0.97512 0.84247 0.95535 1.21345 0.90585 0.93263 0.90922 1.43931 1.75885 1.04579 1.04940 1.19552 1.34805 0.84193 0.99348 0.89884 1.25303 0.99936 0.99914 0.98693 1.70134 1.36233 1.35312 1.10042 0.85759 0.78522 0.82500 0.76063 1.21148 1.22758 1.21528 1.20417 0.90944 0.95376 0.91025 1.20829 1.00737 0.90796 0.91854 1.20806 0.94475 0.88651 1.03252 1.98395 1.98096 1.20478 1.84794 1.21960 0.95859 0.95036 0.94218 1.21590 0.99564 0.93486 0.97048 1.21497 0.88837 1.01778 0.95135 1.20961 0.86394 0.94849 1.11626 1.43907 1.03037 1.00489 0.98144 1.94417 1.91591 1.00835 1.51593 1.94529 1.18829 1.66735 1.58762 0.95673 0.91121 0.95296 0.97056 0.96226 0.88463 0.97209 0.95280 0.90072 0.91936 0.80269 0.78141 0.80812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 11.01 113.37 1.25 2.02 16 2 O -0.32 -16.70 7.40 -148.98 -1.10 -17.80 16 3 C 0.08 3.96 5.61 71.98 0.40 4.37 16 4 C 0.16 8.23 4.87 86.38 0.42 8.65 16 5 N -0.57 -28.11 2.47 -706.35 -1.75 -29.85 16 6 C -0.25 -13.11 9.22 84.03 0.77 -12.33 16 7 H 0.08 4.21 5.85 -2.91 -0.02 4.19 16 8 C -0.04 -2.33 5.16 84.86 0.44 -1.90 16 9 N -0.87 -49.32 6.74 21.65 0.15 -49.17 16 10 Si 0.94 45.14 29.58 68.60 2.03 47.17 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 C 0.15 6.27 4.92 85.63 0.42 6.69 16 15 C -0.04 -1.25 5.45 -19.85 -0.11 -1.36 16 16 C -0.04 -1.28 6.31 22.32 0.14 -1.14 16 17 Cl -0.05 -1.50 24.99 -2.72 -0.07 -1.56 16 18 C -0.05 -1.01 9.83 22.29 0.22 -0.79 16 19 C -0.10 -1.49 10.05 22.27 0.22 -1.27 16 20 C -0.05 -1.15 9.56 22.27 0.21 -0.94 16 21 C -0.05 -1.70 6.67 36.37 0.24 -1.46 16 22 N 0.03 1.21 4.13 -46.47 -0.19 1.02 16 23 O -0.17 -5.77 18.46 18.89 0.35 -5.42 16 24 O -0.18 -7.52 10.39 18.88 0.20 -7.32 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 26 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.02 0.94 6.68 -2.39 -0.02 0.93 16 30 H 0.10 5.54 5.14 -2.66 -0.01 5.53 16 31 H 0.01 0.49 5.61 -2.39 -0.01 0.47 16 32 H 0.24 13.45 8.31 -92.71 -0.77 12.68 16 33 H 0.08 3.50 4.72 -9.21 -0.04 3.46 16 34 H 0.06 2.60 6.91 -2.39 -0.02 2.59 16 35 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.17 2.91 7.62 -2.91 -0.02 2.88 16 Total: -1.00 -66.24 313.70 5.33 -60.91 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 1.08 Total: 1.49 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 4.64 Total: 0.55 kcal Atomic # 7 Polarization: -76.21 SS G_CDS: -1.79 Total: -78.01 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.56 Total: -30.55 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.07 Total: -1.56 kcal Total: -66.24 5.33 -60.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316494024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.006 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds