Wall clock time and date at job start Tue Mar 31 2020 10:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30217 * 126.78744 * 2 1 4 4 O 1.20920 * 111.64565 * 180.28588 * 3 2 1 5 5 C 1.34072 * 111.55372 * 359.70684 * 4 3 2 6 6 Cl 1.73599 * 126.79841 * 180.02562 * 5 4 3 7 7 C 1.35678 * 106.40290 * 359.97438 * 5 4 3 8 8 C 1.50696 * 128.00956 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46955 * 90.03091 * 8 7 5 10 10 C 1.50707 * 109.47017 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99658 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.47584 * 134.49657 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.12025 * 155.36378 * 13 12 10 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49296 * 0.02562 * 12 10 9 25 25 H 1.09008 * 109.46997 * 270.19859 * 1 2 3 26 26 H 1.08994 * 109.47459 * 30.19967 * 1 2 3 27 27 H 1.09002 * 109.46891 * 150.20095 * 1 2 3 28 28 H 1.09002 * 109.47561 * 330.02503 * 8 7 5 29 29 H 1.09004 * 109.47099 * 210.02496 * 8 7 5 30 30 H 1.08992 * 109.47552 * 59.99932 * 9 8 7 31 31 H 1.08994 * 109.47209 * 299.99398 * 9 8 7 32 32 H 1.09003 * 113.76727 * 41.05948 * 13 12 10 33 33 H 1.09000 * 113.86995 * 269.68290 * 13 12 10 34 34 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 35 35 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 36 36 H 1.08994 * 113.77423 * 90.33340 * 24 12 10 37 37 H 1.09010 * 113.76672 * 318.93187 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0429 0.0000 4 8 3.4540 0.7270 -0.0056 5 6 3.6037 -0.6053 -0.0038 6 17 5.1013 -1.4834 -0.0095 7 6 2.3531 -1.1314 0.0045 8 6 1.9582 -2.5857 0.0102 9 6 1.8319 -3.0741 1.4546 10 6 1.4363 -4.5284 1.4604 11 8 1.2721 -5.1162 0.4123 12 7 1.2660 -5.1758 2.6301 13 6 0.8926 -6.5535 3.0049 14 6 1.6365 -6.2842 4.3255 15 8 3.0183 -6.6468 4.2917 16 6 0.9208 -6.8097 5.5432 17 1 0.0163 -7.3889 5.4298 18 6 1.4206 -6.5512 6.8018 19 7 2.3493 -5.6343 6.9650 20 14 0.7789 -7.5032 8.2753 21 1 1.4723 -7.0399 9.5041 22 1 -0.6815 -7.2735 8.4152 23 1 1.0355 -8.9525 8.0781 24 6 1.3772 -4.7915 4.0507 25 1 -0.3633 0.0036 1.0277 26 1 -0.3634 0.8881 -0.5169 27 1 -0.3633 -0.8918 -0.5107 28 1 2.7191 -3.1710 -0.5061 29 1 1.0014 -2.7044 -0.4984 30 1 1.0709 -2.4890 1.9708 31 1 2.7886 -2.9555 1.9632 32 1 1.3599 -7.3192 2.3857 33 1 -0.1803 -6.7019 3.1273 34 1 3.5189 -6.3614 5.0683 35 1 2.6216 -5.0812 6.2160 36 1 0.4463 -4.4210 4.4798 37 1 2.2317 -4.1500 4.2667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332010763.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:46 Heat of formation + Delta-G solvation = -19.016062 kcal Electronic energy + Delta-G solvation = -23673.425400 eV Core-core repulsion = 19866.612184 eV Total energy + Delta-G solvation = -3806.813216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.20759 -41.38271 -39.43719 -38.34214 -36.93181 -36.10151 -34.32198 -34.26702 -31.99807 -30.25713 -29.71691 -27.27485 -27.17622 -25.62395 -22.74857 -22.50839 -21.86034 -20.21167 -19.65230 -18.98254 -18.85242 -18.02466 -17.17152 -17.02200 -16.63123 -16.34634 -15.72031 -15.63306 -15.27319 -14.53620 -14.40515 -14.27084 -14.24732 -13.96362 -13.75233 -13.63357 -13.59103 -13.37223 -13.28411 -12.95955 -12.91263 -12.61231 -12.36643 -12.31958 -11.90254 -11.90191 -11.21030 -11.14594 -11.02242 -10.71284 -10.37727 -10.19012 -9.62462 -8.65883 -6.46646 -0.05746 0.02623 0.90538 1.56492 1.62332 1.65913 1.85511 1.87303 2.44713 2.57120 2.91321 2.94129 3.29378 3.42866 3.57150 3.66686 3.90425 3.94389 4.06944 4.12351 4.35865 4.40612 4.44856 4.57235 4.63162 4.65281 4.68136 4.72302 4.82731 4.88983 4.96320 5.00919 5.17933 5.76358 6.10749 6.47776 6.75158 6.89821 6.94468 7.06692 7.29097 8.67251 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.018759 B = 0.003107 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.223542 B = 9009.707747 C = 9122.365835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.039 3.961 3 N -0.368 5.368 4 O 0.099 5.901 5 C 0.000 4.000 6 Cl 0.059 6.941 7 C -0.167 4.167 8 C -0.019 4.019 9 C -0.119 4.119 10 C 0.527 3.473 11 O -0.589 6.589 12 N -0.635 5.635 13 C 0.121 3.879 14 C 0.196 3.804 15 O -0.577 6.577 16 C -0.633 4.633 17 H 0.061 0.939 18 C 0.001 3.999 19 N -0.916 5.916 20 Si 1.107 2.893 21 H -0.285 1.285 22 H -0.269 1.269 23 H -0.279 1.279 24 C 0.087 3.913 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.374 0.626 35 H 0.265 0.735 36 H 0.093 0.907 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 11.054 -10.460 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 N -0.077 5.077 4 O 0.034 5.966 5 C -0.090 4.090 6 Cl 0.087 6.913 7 C -0.172 4.172 8 C -0.057 4.057 9 C -0.158 4.158 10 C 0.319 3.681 11 O -0.471 6.471 12 N -0.368 5.368 13 C -0.001 4.001 14 C 0.155 3.845 15 O -0.384 6.384 16 C -0.671 4.671 17 H 0.079 0.921 18 C -0.200 4.200 19 N -0.553 5.553 20 Si 0.930 3.070 21 H -0.211 1.211 22 H -0.195 1.195 23 H -0.205 1.205 24 C -0.036 4.036 25 H 0.115 0.885 26 H 0.108 0.892 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.223 0.777 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.099 11.630 -10.170 15.488 hybrid contribution 0.452 -0.417 -1.096 1.256 sum -0.647 11.213 -11.265 15.908 Atomic orbital electron populations 1.20437 0.83034 1.05355 1.05034 1.23841 1.00485 0.87161 1.00465 1.73947 0.88770 1.23704 1.21284 1.84892 1.22225 1.20963 1.68499 1.24790 0.91674 0.84834 1.07735 1.98477 1.27649 1.68549 1.96576 1.20868 0.89943 0.98172 1.08210 1.19588 1.04227 0.86460 0.95430 1.21514 1.04616 0.90515 0.99195 1.20836 0.76280 0.89619 0.81400 1.90635 1.54811 1.69979 1.31646 1.50192 1.67017 1.13609 1.06012 1.23257 0.99861 0.83806 0.93205 1.20372 0.80287 0.90615 0.93228 1.86238 1.22595 1.82485 1.47082 1.22471 1.13386 1.38898 0.92348 0.92074 1.27012 0.93896 0.95929 1.03212 1.71019 1.30226 1.18856 1.35186 0.83031 0.76260 0.75066 0.72640 1.21056 1.19454 1.20469 1.24214 1.01457 1.00662 0.77292 0.88480 0.89169 0.88223 0.89990 0.88279 0.86956 0.88576 0.92071 0.88069 0.77734 0.92341 0.88897 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.39 71.24 0.74 -0.39 16 2 C 0.04 0.81 7.32 43.55 0.32 1.13 16 3 N -0.37 -8.87 12.07 -49.42 -0.60 -9.46 16 4 O 0.10 2.35 11.20 71.34 0.80 3.15 16 5 C 0.00 -0.01 8.12 67.23 0.55 0.54 16 6 Cl 0.06 1.19 29.23 -2.72 -0.08 1.11 16 7 C -0.17 -3.60 5.58 -19.71 -0.11 -3.71 16 8 C -0.02 -0.43 4.90 29.85 0.15 -0.28 16 9 C -0.12 -3.03 5.43 29.85 0.16 -2.87 16 10 C 0.53 18.56 8.06 87.66 0.71 19.27 16 11 O -0.59 -23.98 16.71 -3.03 -0.05 -24.03 16 12 N -0.63 -24.21 3.61 -840.07 -3.03 -27.24 16 13 C 0.12 5.01 8.22 86.48 0.71 5.72 16 14 C 0.20 8.82 1.08 -10.87 -0.01 8.81 16 15 O -0.58 -27.63 13.45 -148.98 -2.00 -29.64 16 16 C -0.63 -30.90 8.56 25.60 0.22 -30.68 16 17 H 0.06 2.96 7.85 -2.91 -0.02 2.94 16 18 C 0.00 0.07 5.26 84.65 0.45 0.52 16 19 N -0.92 -46.49 12.80 21.45 0.27 -46.21 16 20 Si 1.11 44.00 29.93 68.60 2.05 46.06 16 21 H -0.29 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 24 C 0.09 3.35 7.05 86.49 0.61 3.96 16 25 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 1.15 7.65 -2.39 -0.02 1.14 16 28 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 29 H 0.10 2.11 7.61 -2.39 -0.02 2.09 16 30 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.10 3.86 8.09 -2.39 -0.02 3.84 16 34 H 0.37 17.62 6.95 -74.06 -0.52 17.11 16 35 H 0.27 13.08 5.53 -92.70 -0.51 12.57 16 36 H 0.09 3.49 8.09 -2.39 -0.02 3.47 16 37 H 0.07 2.70 7.80 -2.38 -0.02 2.68 16 Total: -1.00 -59.61 338.68 2.71 -56.90 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.86 Total: 27.38 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 4.48 Total: 2.00 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -3.35 Total: -82.91 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -1.26 Total: -50.53 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.05 Total: 46.06 kcal Atomic # 17 Polarization: 1.19 SS G_CDS: -0.08 Total: 1.11 kcal Total: -59.61 2.71 -56.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332010763.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.882 kcal (2) G-P(sol) polarization free energy of solvation -59.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds