Wall clock time and date at job start Tue Mar 31 2020 10:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 120.00353 * 2 1 4 4 C 1.38211 * 120.00319 * 180.02562 * 3 2 1 5 5 C 1.38265 * 119.99950 * 359.76249 * 4 3 2 6 6 C 1.38212 * 119.99480 * 0.46327 * 5 4 3 7 7 S 1.76206 * 119.99882 * 179.78940 * 6 5 4 8 8 O 1.42094 * 104.27917 * 153.65724 * 7 6 5 9 9 O 1.42106 * 104.27486 * 25.79952 * 7 6 5 10 10 C 1.81396 * 104.45095 * 269.72978 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 7 13 13 S 1.81408 * 109.46799 * 180.02562 * 12 11 10 14 14 C 1.81401 * 102.99864 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47130 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99861 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99888 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00302 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99788 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46874 * 90.00310 * 19 17 15 21 21 H 1.48498 * 109.46956 * 209.99962 * 19 17 15 22 22 H 1.48500 * 109.47318 * 330.00246 * 19 17 15 23 23 C 1.38215 * 120.00071 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47151 * 270.02874 * 1 2 3 25 25 H 1.09006 * 109.46788 * 30.02849 * 1 2 3 26 26 H 1.08998 * 109.46957 * 150.02552 * 1 2 3 27 27 H 1.07997 * 119.99758 * 359.96586 * 3 2 1 28 28 H 1.07992 * 120.00028 * 179.97438 * 4 3 2 29 29 H 1.07992 * 119.99914 * 180.25647 * 5 4 3 30 30 H 1.09002 * 109.47134 * 59.99640 * 10 7 6 31 31 H 1.08998 * 109.46953 * 300.00378 * 10 7 6 32 32 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 33 33 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 34 34 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 36 36 H 1.09007 * 109.47294 * 299.99976 * 14 13 12 37 37 H 1.08997 * 109.47110 * 59.99656 * 14 13 12 38 38 H 0.97001 * 120.00368 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.99815 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2718 -0.0001 0.0039 6 6 3.5806 -1.1970 -0.0008 7 16 4.4615 -2.7230 -0.0008 8 8 3.5659 -3.6447 0.6054 9 8 5.7085 -2.4078 0.6035 10 6 4.6867 -3.1158 -1.7574 11 6 5.4491 -4.4355 -1.8913 12 6 5.6396 -4.7663 -3.3729 13 16 6.5429 -6.3315 -3.5316 14 6 6.6676 -6.5502 -5.3280 15 6 7.4052 -7.8296 -5.6283 16 1 7.7635 -8.4489 -4.8193 17 6 7.6226 -8.2095 -6.9357 18 7 7.1867 -7.4551 -7.9208 19 14 8.5375 -9.7951 -7.3079 20 1 7.5673 -10.9152 -7.4047 21 1 9.2640 -9.6568 -8.5956 22 1 9.5082 -10.0737 -6.2192 23 6 2.1981 -1.1970 0.0005 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6584 2.1326 -0.0006 28 1 4.1204 2.1326 -0.0010 29 1 5.3517 -0.0001 0.0077 30 1 5.2537 -2.3186 -2.2381 31 1 3.7122 -3.2084 -2.2367 32 1 4.8825 -5.2328 -1.4104 33 1 6.4237 -4.3422 -1.4120 34 1 4.6652 -4.8594 -3.8526 35 1 6.2064 -3.9689 -3.8533 36 1 5.6673 -6.5983 -5.7586 37 1 7.2089 -5.7084 -5.7598 38 1 7.3393 -7.7225 -8.8407 39 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:20 Heat of formation + Delta-G solvation = -67.854462 kcal Electronic energy + Delta-G solvation = -20318.033924 eV Core-core repulsion = 17057.439837 eV Total energy + Delta-G solvation = -3260.594088 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73746 -37.27472 -36.11682 -34.95675 -33.34651 -33.16473 -31.68187 -28.59055 -27.82169 -27.44805 -23.81007 -23.22682 -22.30208 -21.66825 -19.06024 -17.88814 -16.84275 -16.51968 -16.39824 -16.24592 -15.71572 -15.19053 -14.93290 -14.69377 -14.50110 -14.29034 -13.65219 -13.53701 -13.10148 -12.77402 -12.74222 -12.67786 -12.52341 -12.30825 -12.23865 -12.16220 -12.10857 -11.93361 -11.64717 -11.10340 -11.05937 -10.87049 -10.84221 -10.56648 -9.95358 -9.74050 -9.53692 -9.22455 -8.91006 -8.63172 -6.74514 -6.21346 -4.25441 -0.19850 0.44549 0.85144 2.51833 2.68299 3.02739 3.25797 3.31384 3.37082 3.67878 3.82384 3.87998 4.28737 4.34289 4.35784 4.50156 4.55870 4.59480 4.81089 4.83393 4.94929 5.04306 5.15275 5.16018 5.22900 5.28682 5.43328 5.43775 5.62127 5.66543 5.69519 5.82675 5.89578 5.98140 6.08322 6.41372 7.06224 7.07648 7.73697 7.98988 8.76615 9.37823 10.90020 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.028178 B = 0.002221 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.428820 B =12602.940576 C =12905.090019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.108 4.108 3 C -0.069 4.069 4 C -0.137 4.137 5 C -0.030 4.030 6 C -0.654 4.654 7 S 2.495 3.505 8 O -0.935 6.935 9 O -0.934 6.934 10 C -0.597 4.597 11 C -0.095 4.095 12 C -0.083 4.083 13 S -0.309 6.309 14 C 0.093 3.907 15 C -0.512 4.512 16 H 0.068 0.932 17 C 0.065 3.935 18 N -0.894 5.894 19 Si 0.907 3.093 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.026 4.026 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.129 0.871 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.319 19.600 14.614 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.109 4.109 3 C -0.087 4.087 4 C -0.156 4.156 5 C -0.049 4.049 6 C -0.740 4.740 7 S 2.676 3.324 8 O -0.932 6.932 9 O -0.932 6.932 10 C -0.729 4.729 11 C -0.135 4.135 12 C -0.233 4.233 13 S -0.082 6.082 14 C -0.054 4.054 15 C -0.552 4.552 16 H 0.086 0.914 17 C -0.139 4.139 18 N -0.532 5.532 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.045 4.045 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.698 18.529 15.957 27.107 hybrid contribution -0.368 0.755 -2.025 2.192 sum -12.066 19.285 13.932 26.675 Atomic orbital electron populations 1.20836 0.90351 1.03334 1.02833 1.20088 0.96703 0.93100 1.00960 1.21387 0.94484 0.97862 0.95000 1.21311 0.94447 0.98394 1.01405 1.21005 1.00534 0.91136 0.92224 1.30684 1.06024 1.19704 1.17579 1.05537 0.74657 0.74231 0.77989 1.93575 1.64908 1.61426 1.73273 1.93578 1.42645 1.83594 1.73347 1.30336 1.10875 1.07935 1.23730 1.21106 1.01040 0.93167 0.98170 1.23126 1.03020 0.99794 0.97312 1.86695 1.74509 1.27310 1.19703 1.21048 1.00356 1.00907 0.83066 1.20693 1.36671 1.05416 0.92387 0.91383 1.24972 0.95643 0.97653 0.95653 1.69949 1.45909 1.37930 0.99436 0.86335 0.79787 0.82608 0.77837 1.20325 1.20988 1.19498 1.20897 0.92000 0.98997 0.92572 0.90771 0.91221 0.90951 0.85283 0.84930 0.83957 0.84419 0.84436 0.89311 0.89310 0.90438 0.90428 0.94591 0.94580 0.92494 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 36.00 0.36 -0.25 16 2 C -0.11 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.07 -0.48 9.70 -39.58 -0.38 -0.86 16 4 C -0.14 -0.99 10.05 -39.58 -0.40 -1.39 16 5 C -0.03 -0.26 9.47 -39.58 -0.37 -0.64 16 6 C -0.65 -6.23 5.66 -39.58 -0.22 -6.45 16 7 S 2.50 26.57 5.16 -107.50 -0.55 26.02 16 8 O -0.93 -12.56 17.13 -57.54 -0.99 -13.54 16 9 O -0.93 -12.55 17.12 -57.54 -0.98 -13.53 16 10 C -0.60 -5.43 5.98 37.16 0.22 -5.21 16 11 C -0.10 -1.22 5.23 -26.73 -0.14 -1.36 16 12 C -0.08 -1.31 5.94 37.16 0.22 -1.09 16 13 S -0.31 -6.65 21.66 -107.50 -2.33 -8.98 16 14 C 0.09 2.40 5.70 36.00 0.21 2.61 16 15 C -0.51 -14.45 9.13 -34.44 -0.31 -14.77 16 16 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 17 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 19 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.03 -0.23 9.13 -39.58 -0.36 -0.59 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 26 H 0.07 0.34 8.09 -51.93 -0.42 -0.07 16 27 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 28 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 29 H 0.14 1.07 7.56 -52.49 -0.40 0.67 16 30 H 0.14 0.97 8.14 -51.92 -0.42 0.54 16 31 H 0.14 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 39 H 0.14 1.12 7.57 -52.49 -0.40 0.72 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -34.94 359.26 -11.45 -46.39 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.82 Total: -3.21 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: -1.90 Total: -29.73 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.74 Total: -25.16 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -1.97 Total: -27.08 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 19.92 SS G_CDS: -2.88 Total: 17.04 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.94 -11.45 -46.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.464 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds