Wall clock time and date at job start Tue Mar 31 2020 10:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 120.00353 * 2 1 4 4 C 1.38211 * 120.00319 * 180.02562 * 3 2 1 5 5 C 1.38265 * 119.99950 * 359.76249 * 4 3 2 6 6 C 1.38212 * 119.99480 * 0.46327 * 5 4 3 7 7 S 1.76206 * 119.99882 * 179.78940 * 6 5 4 8 8 O 1.42094 * 104.27917 * 153.65724 * 7 6 5 9 9 O 1.42106 * 104.27486 * 25.79952 * 7 6 5 10 10 C 1.81396 * 104.45095 * 269.72978 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 7 13 13 S 1.81408 * 109.46799 * 180.02562 * 12 11 10 14 14 C 1.81401 * 102.99864 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47130 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99861 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99888 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00302 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99788 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46874 * 90.00310 * 19 17 15 21 21 H 1.48498 * 109.46956 * 209.99962 * 19 17 15 22 22 H 1.48500 * 109.47318 * 330.00246 * 19 17 15 23 23 C 1.38215 * 120.00071 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.47151 * 270.02874 * 1 2 3 25 25 H 1.09006 * 109.46788 * 30.02849 * 1 2 3 26 26 H 1.08998 * 109.46957 * 150.02552 * 1 2 3 27 27 H 1.07997 * 119.99758 * 359.96586 * 3 2 1 28 28 H 1.07992 * 120.00028 * 179.97438 * 4 3 2 29 29 H 1.07992 * 119.99914 * 180.25647 * 5 4 3 30 30 H 1.09002 * 109.47134 * 59.99640 * 10 7 6 31 31 H 1.08998 * 109.46953 * 300.00378 * 10 7 6 32 32 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 33 33 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 34 34 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 35 35 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 36 36 H 1.09007 * 109.47294 * 299.99976 * 14 13 12 37 37 H 1.08997 * 109.47110 * 59.99656 * 14 13 12 38 38 H 0.97001 * 120.00368 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.99815 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2718 -0.0001 0.0039 6 6 3.5806 -1.1970 -0.0008 7 16 4.4615 -2.7230 -0.0008 8 8 3.5659 -3.6447 0.6054 9 8 5.7085 -2.4078 0.6035 10 6 4.6867 -3.1158 -1.7574 11 6 5.4491 -4.4355 -1.8913 12 6 5.6396 -4.7663 -3.3729 13 16 6.5429 -6.3315 -3.5316 14 6 6.6676 -6.5502 -5.3280 15 6 7.4052 -7.8296 -5.6283 16 1 7.7635 -8.4489 -4.8193 17 6 7.6226 -8.2095 -6.9357 18 7 7.1867 -7.4551 -7.9208 19 14 8.5375 -9.7951 -7.3079 20 1 7.5673 -10.9152 -7.4047 21 1 9.2640 -9.6568 -8.5956 22 1 9.5082 -10.0737 -6.2192 23 6 2.1981 -1.1970 0.0005 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6584 2.1326 -0.0006 28 1 4.1204 2.1326 -0.0010 29 1 5.3517 -0.0001 0.0077 30 1 5.2537 -2.3186 -2.2381 31 1 3.7122 -3.2084 -2.2367 32 1 4.8825 -5.2328 -1.4104 33 1 6.4237 -4.3422 -1.4120 34 1 4.6652 -4.8594 -3.8526 35 1 6.2064 -3.9689 -3.8533 36 1 5.6673 -6.5983 -5.7586 37 1 7.2089 -5.7084 -5.7598 38 1 7.3393 -7.7225 -8.8407 39 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413009362.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:16:20 Heat of formation + Delta-G solvation = -89.384596 kcal Electronic energy + Delta-G solvation = -20318.967541 eV Core-core repulsion = 17057.439837 eV Total energy + Delta-G solvation = -3261.527704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29604 -38.21457 -37.06097 -36.00254 -35.29829 -33.86615 -32.26105 -30.69177 -28.91148 -27.92379 -25.32185 -24.38609 -23.05684 -22.59676 -19.88732 -18.73674 -18.50973 -17.68086 -17.34224 -16.98537 -16.90371 -16.51554 -16.21949 -15.83266 -15.24854 -14.89434 -14.76196 -14.55238 -14.54389 -14.19763 -13.88183 -13.69052 -13.35525 -13.26984 -13.21590 -13.15251 -13.10140 -13.04855 -12.75152 -12.55716 -12.17692 -12.08721 -12.02776 -11.86461 -11.64310 -11.27578 -10.75313 -10.71951 -10.32168 -9.78958 -8.51201 -8.34435 -6.47241 -1.01665 -0.18112 0.27568 0.97725 1.40356 1.41195 1.53867 1.88380 2.01560 2.36432 2.41524 2.88595 3.00355 3.10896 3.59334 3.66470 3.81412 3.82934 3.88468 4.06712 4.16790 4.29147 4.36180 4.49709 4.52487 4.63768 4.77283 4.79552 4.83187 4.91016 4.93240 4.94187 4.96967 5.07944 5.22362 5.29170 5.45711 5.56557 5.87913 5.88154 6.60013 7.20839 8.77521 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.028178 B = 0.002221 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.428820 B =12602.940576 C =12905.090019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 C -0.070 4.070 4 C -0.139 4.139 5 C -0.048 4.048 6 C -0.658 4.658 7 S 2.506 3.494 8 O -0.970 6.970 9 O -0.969 6.969 10 C -0.583 4.583 11 C -0.101 4.101 12 C -0.070 4.070 13 S -0.331 6.331 14 C 0.096 3.904 15 C -0.538 4.538 16 H 0.061 0.939 17 C 0.015 3.985 18 N -0.925 5.925 19 Si 0.976 3.024 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.046 4.046 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.148 0.852 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.271 0.729 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.111 21.063 14.629 28.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.116 4.116 3 C -0.088 4.088 4 C -0.158 4.158 5 C -0.067 4.067 6 C -0.747 4.747 7 S 2.691 3.309 8 O -0.967 6.967 9 O -0.966 6.966 10 C -0.715 4.715 11 C -0.141 4.141 12 C -0.220 4.220 13 S -0.104 6.104 14 C -0.051 4.051 15 C -0.577 4.577 16 H 0.079 0.921 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.799 3.201 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.191 1.191 23 C -0.065 4.065 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.093 0.907 27 H 0.176 0.824 28 H 0.176 0.824 29 H 0.166 0.834 30 H 0.183 0.817 31 H 0.182 0.818 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.479 19.969 15.995 28.466 hybrid contribution -0.212 0.458 -1.982 2.045 sum -12.692 20.427 14.013 27.834 Atomic orbital electron populations 1.20905 0.88773 1.04285 1.03464 1.20429 0.98013 0.92916 1.00207 1.21794 0.94580 0.98780 0.93603 1.21671 0.94937 0.98830 1.00332 1.21249 1.01128 0.91513 0.92829 1.30330 1.06180 1.18837 1.19342 1.04881 0.73624 0.74138 0.78262 1.93526 1.65509 1.62989 1.74676 1.93529 1.44181 1.84167 1.74731 1.30215 1.12282 1.06552 1.22500 1.21106 1.01839 0.95251 0.95872 1.23265 1.02730 0.96275 0.99690 1.86572 1.76093 1.31988 1.15759 1.20723 0.98601 0.99534 0.86251 1.21018 1.37445 1.06453 0.92773 0.92087 1.25902 0.96233 1.01114 0.95368 1.70043 1.46718 1.39651 0.99936 0.85280 0.78599 0.78318 0.77879 1.19390 1.19959 1.19087 1.21102 0.91974 0.99956 0.93479 0.90219 0.89610 0.90739 0.82440 0.82434 0.83383 0.81694 0.81779 0.89401 0.89374 0.89140 0.89108 0.96455 0.96441 0.92036 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 71.23 0.71 -0.26 16 2 C -0.11 -1.53 5.88 -19.87 -0.12 -1.64 16 3 C -0.07 -0.76 9.70 22.27 0.22 -0.55 16 4 C -0.14 -1.68 10.05 22.27 0.22 -1.45 16 5 C -0.05 -0.77 9.47 22.27 0.21 -0.56 16 6 C -0.66 -11.92 5.66 22.27 0.13 -11.80 16 7 S 2.51 52.31 5.16 -56.49 -0.29 52.02 16 8 O -0.97 -26.31 17.13 -127.65 -2.19 -28.50 16 9 O -0.97 -26.13 17.12 -127.65 -2.19 -28.31 16 10 C -0.58 -9.41 5.98 71.98 0.43 -8.98 16 11 C -0.10 -2.46 5.23 30.59 0.16 -2.30 16 12 C -0.07 -2.13 5.94 71.98 0.43 -1.70 16 13 S -0.33 -14.35 21.66 -56.49 -1.22 -15.57 16 14 C 0.10 5.10 5.70 71.24 0.41 5.51 16 15 C -0.54 -30.94 9.13 25.60 0.23 -30.70 16 16 H 0.06 3.51 7.71 -2.91 -0.02 3.49 16 17 C 0.01 0.82 5.46 84.66 0.46 1.29 16 18 N -0.92 -54.10 13.29 21.45 0.28 -53.82 16 19 Si 0.98 43.77 29.54 68.60 2.03 45.79 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C -0.05 -0.78 9.13 22.27 0.20 -0.58 16 24 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 0.43 8.09 -2.38 -0.02 0.41 16 26 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 27 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 28 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 29 H 0.15 2.07 7.56 -2.91 -0.02 2.05 16 30 H 0.17 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.14 2.22 7.57 -2.91 -0.02 2.19 16 Total: -1.00 -76.47 359.26 1.14 -75.33 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.02 Total: 6.79 kcal Atomic # 6 Polarization: -57.42 SS G_CDS: 3.70 Total: -53.73 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.28 Total: -53.82 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -4.37 Total: -56.81 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 37.96 SS G_CDS: -1.51 Total: 36.44 kcal Total: -76.47 1.14 -75.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009362.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.058 kcal (2) G-P(sol) polarization free energy of solvation -76.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds