Wall clock time and date at job start Tue Mar 31 2020 10:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42096 * 110.54461 * 2 1 4 4 O 1.42105 * 110.53894 * 223.25609 * 2 1 3 5 5 C 1.76199 * 104.44805 * 111.63011 * 2 1 3 6 6 C 1.38254 * 120.00075 * 269.90555 * 5 2 1 7 7 C 1.38204 * 119.99816 * 179.97438 * 6 5 2 8 8 C 1.38262 * 120.00535 * 0.13864 * 7 6 5 9 9 C 1.38207 * 119.99549 * 359.95204 * 8 7 6 10 10 C 1.50701 * 119.99822 * 180.02562 * 9 8 7 11 11 S 1.81398 * 109.47126 * 269.97520 * 10 9 8 12 12 C 1.81394 * 103.00163 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47158 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.46990 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47042 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99943 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00233 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00205 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47169 * 59.99722 * 19 17 15 21 21 H 1.48501 * 109.46918 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46758 * 299.99876 * 19 17 15 23 23 C 1.38220 * 119.99875 * 90.00066 * 5 2 1 24 24 H 1.09004 * 109.47330 * 308.37293 * 1 2 3 25 25 H 1.09002 * 109.47583 * 68.36888 * 1 2 3 26 26 H 1.08996 * 109.47896 * 188.36914 * 1 2 3 27 27 H 1.07997 * 119.99692 * 0.06811 * 6 5 2 28 28 H 1.08013 * 119.99933 * 180.11390 * 7 6 5 29 29 H 1.07991 * 120.00050 * 179.97438 * 8 7 6 30 30 H 1.08993 * 109.47341 * 29.98219 * 10 9 8 31 31 H 1.09001 * 109.46864 * 149.98303 * 10 9 8 32 32 H 1.09001 * 109.47666 * 300.00399 * 12 11 10 33 33 H 1.09006 * 109.46709 * 60.00388 * 12 11 10 34 34 H 1.09003 * 109.47330 * 300.00191 * 13 12 11 35 35 H 1.09000 * 109.46598 * 60.00768 * 13 12 11 36 36 H 1.09001 * 109.47694 * 300.00303 * 14 13 12 37 37 H 1.09000 * 109.47236 * 60.00181 * 14 13 12 38 38 H 0.96998 * 119.99883 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.99660 * 0.26988 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9119 5 6 2.2536 -0.6290 1.5861 6 6 2.4280 0.2375 2.6493 7 6 2.7723 -0.2560 3.8935 8 6 2.9452 -1.6158 4.0744 9 6 2.7727 -2.4817 3.0111 10 6 2.9605 -3.9639 3.2084 11 16 4.6919 -4.4016 2.8902 12 6 4.7188 -6.1929 3.1743 13 6 6.1347 -6.7248 2.9430 14 6 6.1572 -8.2358 3.1820 15 6 7.5518 -8.7596 2.9548 16 1 8.3431 -8.0824 2.6688 17 6 7.8178 -10.1034 3.1118 18 7 6.8541 -10.9281 3.4595 19 14 9.5467 -10.7525 2.8308 20 1 10.4837 -10.0889 3.7725 21 1 9.5685 -12.2191 3.0627 22 1 9.9622 -10.4654 1.4343 23 6 2.4260 -1.9884 1.7670 24 1 -0.3634 0.6380 0.8057 25 1 -0.3634 0.3788 -0.9553 26 1 -0.3635 -1.0166 0.1496 27 1 2.2937 1.2997 2.5078 28 1 2.9067 0.4207 4.7245 29 1 3.2146 -2.0012 5.0465 30 1 2.7009 -4.2299 4.2330 31 1 2.3157 -4.5069 2.5174 32 1 4.4153 -6.4028 4.2000 33 1 4.0299 -6.6806 2.4846 34 1 6.4386 -6.5150 1.9174 35 1 6.8232 -6.2371 3.6331 36 1 5.8531 -8.4461 4.2074 37 1 5.4687 -8.7232 2.4917 38 1 7.0412 -11.8734 3.5704 39 1 2.2956 -2.6646 0.9350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419509361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:06 Heat of formation + Delta-G solvation = -63.547340 kcal Electronic energy + Delta-G solvation = -20170.911883 eV Core-core repulsion = 16910.504566 eV Total energy + Delta-G solvation = -3260.407317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.70259 -37.43979 -36.27086 -34.47134 -33.31760 -32.03535 -31.66037 -29.95194 -27.81161 -27.19935 -23.65466 -23.45102 -22.20308 -20.28060 -19.19794 -17.98596 -16.62566 -16.49133 -16.44109 -16.34531 -15.78597 -15.46270 -14.80610 -14.61685 -14.57375 -14.11046 -13.79496 -13.66933 -13.57583 -13.08483 -12.90826 -12.58074 -12.50409 -12.40584 -12.31214 -11.91112 -11.74088 -11.51861 -11.46783 -10.96483 -10.91899 -10.85811 -10.58609 -9.98488 -9.80552 -9.66555 -9.34493 -9.17878 -9.00494 -8.37326 -7.50253 -6.02638 -4.05120 -0.33448 0.45136 0.78103 1.91626 2.49145 2.78908 3.16772 3.33629 3.37398 3.40761 3.59373 3.71527 4.21430 4.30625 4.37964 4.44976 4.55042 4.64490 4.80304 4.84975 5.08675 5.15312 5.25758 5.33279 5.41883 5.47245 5.54743 5.60485 5.66203 5.88849 6.05726 6.09478 6.44145 6.53369 6.69743 7.00103 7.61639 7.73737 7.96128 8.38076 9.01039 9.59098 11.08689 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.002144 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.185603 B =13055.881686 C =13505.008459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.500 3.500 3 O -0.938 6.938 4 O -0.932 6.932 5 C -0.660 4.660 6 C -0.026 4.026 7 C -0.138 4.138 8 C -0.048 4.048 9 C -0.084 4.084 10 C -0.055 4.055 11 S -0.266 6.266 12 C -0.075 4.075 13 C -0.095 4.095 14 C 0.028 3.972 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.008 4.008 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.261 0.739 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.127 24.263 -1.232 30.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.679 3.321 3 O -0.936 6.936 4 O -0.930 6.930 5 C -0.746 4.746 6 C -0.045 4.045 7 C -0.157 4.157 8 C -0.067 4.067 9 C -0.086 4.086 10 C -0.203 4.203 11 S -0.036 6.036 12 C -0.223 4.223 13 C -0.134 4.134 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.029 4.029 24 H 0.150 0.850 25 H 0.150 0.850 26 H 0.151 0.849 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.766 24.956 -2.127 30.140 hybrid contribution -0.529 -1.617 1.059 2.004 sum -17.295 23.340 -1.068 29.069 Atomic orbital electron populations 1.30235 1.25841 1.12137 1.11822 1.05190 0.77823 0.74679 0.74382 1.93584 1.77304 1.36580 1.86096 1.93621 1.77099 1.61460 1.60774 1.30498 1.19385 1.02684 1.22058 1.20943 0.92675 0.99327 0.91583 1.21278 1.01310 0.95477 0.97665 1.21423 0.93105 0.93295 0.98914 1.19419 1.00958 0.94152 0.94040 1.22279 0.98063 0.94496 1.05449 1.87225 1.11241 1.12718 1.92371 1.23672 1.04283 0.90246 1.04061 1.21474 0.90799 0.99702 1.01449 1.19095 0.97363 0.87453 0.97151 1.21186 0.95019 0.93018 1.46746 0.92582 1.25024 0.97164 0.97048 0.95203 1.69950 1.32050 1.03782 1.47788 0.86620 0.84697 0.77649 0.78836 1.20191 1.21277 1.20148 1.20857 0.91719 0.93287 0.97003 0.85022 0.84984 0.84902 0.84101 0.84785 0.84830 0.89009 0.88956 0.90498 0.90408 0.92297 0.92386 0.96471 0.96412 0.92904 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.99 10.80 101.05 1.09 -0.90 16 2 S 2.50 19.15 5.80 -107.50 -0.62 18.53 16 3 O -0.94 -9.90 17.13 -57.54 -0.99 -10.88 16 4 O -0.93 -10.82 17.12 -57.54 -0.99 -11.81 16 5 C -0.66 -5.80 5.66 -39.58 -0.22 -6.02 16 6 C -0.03 -0.21 9.47 -39.59 -0.37 -0.58 16 7 C -0.14 -1.08 10.05 -39.59 -0.40 -1.48 16 8 C -0.05 -0.43 9.70 -39.58 -0.38 -0.81 16 9 C -0.08 -0.87 5.14 -104.63 -0.54 -1.41 16 10 C -0.06 -0.61 6.07 36.01 0.22 -0.39 16 11 S -0.27 -4.08 21.72 -107.50 -2.33 -6.41 16 12 C -0.07 -1.27 5.94 37.16 0.22 -1.04 16 13 C -0.10 -1.99 5.16 -26.73 -0.14 -2.13 16 14 C 0.03 0.73 4.97 -27.89 -0.14 0.59 16 15 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.01 -0.08 9.13 -39.58 -0.36 -0.44 16 24 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 25 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 26 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.14 0.84 7.57 -52.49 -0.40 0.44 16 28 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.09 0.91 8.09 -51.92 -0.42 0.49 16 32 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.14 1.35 7.57 -52.49 -0.40 0.95 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -36.43 359.32 -11.06 -47.49 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -5.83 Total: -4.73 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -1.44 Total: -28.24 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -1.97 Total: -22.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 15.08 SS G_CDS: -2.96 Total: 12.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.43 -11.06 -47.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419509361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.056 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds