Wall clock time and date at job start Tue Mar 31 2020 10:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42096 * 110.54461 * 2 1 4 4 O 1.42105 * 110.53894 * 223.25609 * 2 1 3 5 5 C 1.76199 * 104.44805 * 111.63011 * 2 1 3 6 6 C 1.38254 * 120.00075 * 269.90555 * 5 2 1 7 7 C 1.38204 * 119.99816 * 179.97438 * 6 5 2 8 8 C 1.38262 * 120.00535 * 0.13864 * 7 6 5 9 9 C 1.38207 * 119.99549 * 359.95204 * 8 7 6 10 10 C 1.50701 * 119.99822 * 180.02562 * 9 8 7 11 11 S 1.81398 * 109.47126 * 269.97520 * 10 9 8 12 12 C 1.81394 * 103.00163 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47158 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.46990 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47042 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99943 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00233 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99696 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00205 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47169 * 59.99722 * 19 17 15 21 21 H 1.48501 * 109.46918 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46758 * 299.99876 * 19 17 15 23 23 C 1.38220 * 119.99875 * 90.00066 * 5 2 1 24 24 H 1.09004 * 109.47330 * 308.37293 * 1 2 3 25 25 H 1.09002 * 109.47583 * 68.36888 * 1 2 3 26 26 H 1.08996 * 109.47896 * 188.36914 * 1 2 3 27 27 H 1.07997 * 119.99692 * 0.06811 * 6 5 2 28 28 H 1.08013 * 119.99933 * 180.11390 * 7 6 5 29 29 H 1.07991 * 120.00050 * 179.97438 * 8 7 6 30 30 H 1.08993 * 109.47341 * 29.98219 * 10 9 8 31 31 H 1.09001 * 109.46864 * 149.98303 * 10 9 8 32 32 H 1.09001 * 109.47666 * 300.00399 * 12 11 10 33 33 H 1.09006 * 109.46709 * 60.00388 * 12 11 10 34 34 H 1.09003 * 109.47330 * 300.00191 * 13 12 11 35 35 H 1.09000 * 109.46598 * 60.00768 * 13 12 11 36 36 H 1.09001 * 109.47694 * 300.00303 * 14 13 12 37 37 H 1.09000 * 109.47236 * 60.00181 * 14 13 12 38 38 H 0.96998 * 119.99883 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.99660 * 0.26988 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9119 5 6 2.2536 -0.6290 1.5861 6 6 2.4280 0.2375 2.6493 7 6 2.7723 -0.2560 3.8935 8 6 2.9452 -1.6158 4.0744 9 6 2.7727 -2.4817 3.0111 10 6 2.9605 -3.9639 3.2084 11 16 4.6919 -4.4016 2.8902 12 6 4.7188 -6.1929 3.1743 13 6 6.1347 -6.7248 2.9430 14 6 6.1572 -8.2358 3.1820 15 6 7.5518 -8.7596 2.9548 16 1 8.3431 -8.0824 2.6688 17 6 7.8178 -10.1034 3.1118 18 7 6.8541 -10.9281 3.4595 19 14 9.5467 -10.7525 2.8308 20 1 10.4837 -10.0889 3.7725 21 1 9.5685 -12.2191 3.0627 22 1 9.9622 -10.4654 1.4343 23 6 2.4260 -1.9884 1.7670 24 1 -0.3634 0.6380 0.8057 25 1 -0.3634 0.3788 -0.9553 26 1 -0.3635 -1.0166 0.1496 27 1 2.2937 1.2997 2.5078 28 1 2.9067 0.4207 4.7245 29 1 3.2146 -2.0012 5.0465 30 1 2.7009 -4.2299 4.2330 31 1 2.3157 -4.5069 2.5174 32 1 4.4153 -6.4028 4.2000 33 1 4.0299 -6.6806 2.4846 34 1 6.4386 -6.5150 1.9174 35 1 6.8232 -6.2371 3.6331 36 1 5.8531 -8.4461 4.2074 37 1 5.4687 -8.7232 2.4917 38 1 7.0412 -11.8734 3.5704 39 1 2.2956 -2.6646 0.9350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419509361.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:05 Heat of formation + Delta-G solvation = -86.879748 kcal Electronic energy + Delta-G solvation = -20171.923652 eV Core-core repulsion = 16910.504566 eV Total energy + Delta-G solvation = -3261.419086 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.080 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.36543 -38.14690 -36.98107 -36.38044 -34.07182 -34.03460 -32.29828 -30.26261 -29.48984 -28.24189 -25.36900 -24.29745 -22.99786 -22.02860 -19.84621 -18.73334 -18.48214 -17.23350 -17.13537 -17.04354 -16.95936 -16.56546 -16.32176 -16.00094 -15.54138 -15.13764 -14.49417 -14.40039 -14.10231 -14.09406 -13.92356 -13.87336 -13.44068 -13.41170 -13.22064 -13.14260 -13.03995 -12.78873 -12.73163 -12.47274 -12.26213 -12.04839 -11.67892 -11.56967 -11.50618 -11.26252 -10.92215 -10.57370 -10.32450 -9.83763 -8.71788 -8.22718 -6.33710 -0.86207 -0.24667 0.02485 0.89304 1.39346 1.42226 1.50275 1.62185 1.92237 2.39864 2.50486 3.04729 3.10506 3.15172 3.53228 3.74609 4.00656 4.02256 4.07831 4.10467 4.11647 4.18244 4.21883 4.45325 4.52494 4.57384 4.72457 4.79706 4.89605 4.95058 4.96779 5.02381 5.10931 5.24999 5.36940 5.46721 5.66197 5.80266 5.80402 6.20868 6.81390 7.35321 8.88778 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.002144 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.185603 B =13055.881686 C =13505.008459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 S 2.500 3.500 3 O -0.975 6.975 4 O -0.983 6.983 5 C -0.663 4.663 6 C -0.030 4.030 7 C -0.138 4.138 8 C -0.055 4.055 9 C -0.102 4.102 10 C -0.040 4.040 11 S -0.299 6.299 12 C -0.066 4.066 13 C -0.082 4.082 14 C 0.032 3.968 15 C -0.547 4.547 16 H 0.057 0.943 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.965 3.035 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.268 1.268 23 C -0.025 4.025 24 H 0.159 0.841 25 H 0.153 0.847 26 H 0.151 0.849 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.147 0.853 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.054 0.946 36 H -0.002 1.002 37 H -0.003 1.003 38 H 0.265 0.735 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.315 25.864 -0.757 32.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.775 4.775 2 S 2.684 3.316 3 O -0.972 6.972 4 O -0.980 6.980 5 C -0.750 4.750 6 C -0.049 4.049 7 C -0.157 4.157 8 C -0.074 4.074 9 C -0.105 4.105 10 C -0.187 4.187 11 S -0.069 6.069 12 C -0.214 4.214 13 C -0.121 4.121 14 C -0.007 4.007 15 C -0.586 4.586 16 H 0.075 0.925 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.789 3.211 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.045 4.045 24 H 0.177 0.823 25 H 0.171 0.829 26 H 0.170 0.830 27 H 0.179 0.821 28 H 0.180 0.820 29 H 0.165 0.835 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.017 0.983 37 H 0.015 0.985 38 H 0.074 0.926 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.900 26.556 -1.647 32.067 hybrid contribution -0.319 -1.983 0.919 2.209 sum -18.219 24.572 -0.728 30.599 Atomic orbital electron populations 1.30017 1.18977 1.14307 1.14247 1.04987 0.80256 0.73056 0.73278 1.93533 1.79778 1.37616 1.86272 1.93558 1.79856 1.62447 1.62156 1.30607 1.19401 1.02273 1.22671 1.21316 0.91807 1.00311 0.91479 1.21642 1.00131 0.95440 0.98472 1.21675 0.92794 0.93817 0.99146 1.19449 1.02459 0.93792 0.94762 1.22339 0.94222 0.95350 1.06776 1.87269 1.16151 1.10780 1.92686 1.23365 1.01545 0.91871 1.04633 1.21173 0.93526 0.96554 1.00799 1.18967 0.95742 0.90669 0.95299 1.21634 0.96295 0.93676 1.46948 0.92492 1.25955 1.01642 0.97329 0.94712 1.70070 1.34309 1.04180 1.48519 0.85508 0.79342 0.77158 0.79105 1.19209 1.20537 1.19324 1.20962 0.92519 0.94050 0.96995 0.82303 0.82854 0.83045 0.82128 0.82024 0.83526 0.87278 0.87895 0.89719 0.90024 0.93008 0.92747 0.98324 0.98467 0.92630 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -1.65 10.80 113.37 1.22 -0.43 16 2 S 2.50 36.31 5.80 -56.49 -0.33 35.99 16 3 O -0.97 -20.08 17.13 -127.65 -2.19 -22.27 16 4 O -0.98 -23.38 17.12 -127.65 -2.19 -25.57 16 5 C -0.66 -10.95 5.66 22.27 0.13 -10.82 16 6 C -0.03 -0.42 9.47 22.27 0.21 -0.21 16 7 C -0.14 -1.83 10.05 22.27 0.22 -1.61 16 8 C -0.05 -0.88 9.70 22.27 0.22 -0.67 16 9 C -0.10 -2.01 5.14 -19.87 -0.10 -2.11 16 10 C -0.04 -0.83 6.07 71.24 0.43 -0.40 16 11 S -0.30 -9.10 21.72 -56.49 -1.23 -10.33 16 12 C -0.07 -2.26 5.94 71.98 0.43 -1.83 16 13 C -0.08 -3.49 5.16 30.59 0.16 -3.34 16 14 C 0.03 1.70 4.97 29.85 0.15 1.85 16 15 C -0.55 -31.77 9.11 25.60 0.23 -31.53 16 16 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 17 C 0.00 0.10 5.46 84.66 0.46 0.56 16 18 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 19 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 C -0.02 -0.48 9.13 22.27 0.20 -0.28 16 24 H 0.16 -0.30 8.14 -2.39 -0.02 -0.32 16 25 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.16 1.54 7.57 -2.91 -0.02 1.52 16 28 H 0.16 1.17 8.06 -2.90 -0.02 1.15 16 29 H 0.15 1.90 8.06 -2.92 -0.02 1.88 16 30 H 0.11 1.90 8.08 -2.39 -0.02 1.88 16 31 H 0.10 1.92 8.09 -2.39 -0.02 1.90 16 32 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.14 2.70 7.57 -2.91 -0.02 2.68 16 Total: -1.00 -80.66 359.32 1.37 -79.29 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.02 Total: 3.24 kcal Atomic # 6 Polarization: -54.77 SS G_CDS: 3.96 Total: -50.80 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.28 Total: -56.38 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -4.37 Total: -47.84 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 27.21 SS G_CDS: -1.55 Total: 25.66 kcal Total: -80.66 1.37 -79.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419509361.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.588 kcal (2) G-P(sol) polarization free energy of solvation -80.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds