Wall clock time and date at job start Tue Mar 31 2020 10:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.50693 * 109.47486 * 179.72204 * 6 4 3 8 8 N 1.27980 * 125.05980 * 89.69508 * 7 6 4 9 9 N 1.37938 * 115.12097 * 179.80466 * 8 7 6 10 10 H 0.97000 * 122.80939 * 180.20188 * 9 8 7 11 11 C 1.33675 * 114.37475 * 0.48664 * 9 8 7 12 12 N 1.33191 * 125.23467 * 179.75025 * 11 9 8 13 13 C 1.33571 * 119.99514 * 179.97438 * 12 11 9 14 14 O 1.21886 * 120.00031 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99306 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99646 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47200 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99403 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99818 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00466 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99647 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47439 * 60.00140 * 21 19 17 23 23 H 1.48496 * 109.47341 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47227 * 300.00491 * 21 19 17 25 25 S 1.70863 * 109.52523 * 359.74731 * 11 9 8 26 26 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 27 27 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 29 29 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 30 30 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 31 31 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 32 32 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 33 33 H 0.97004 * 120.00272 * 359.97438 * 15 13 12 34 34 H 1.09005 * 109.47297 * 300.00078 * 16 15 13 35 35 H 1.09004 * 109.47191 * 59.99708 * 16 15 13 36 36 H 0.96997 * 120.00196 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4255 2.8585 0.0106 8 7 6.1630 2.8177 -1.0346 9 7 7.5193 2.7514 -0.7921 10 1 8.1792 2.7186 -1.5022 11 6 7.8476 2.7300 0.5035 12 7 9.0894 2.6635 0.9805 13 6 9.2981 2.6488 2.2997 14 8 8.3522 2.6959 3.0670 15 7 10.5547 2.5810 2.7824 16 6 10.7837 2.5644 4.2293 17 6 12.2636 2.4847 4.5028 18 1 12.9634 2.4504 3.6810 19 6 12.7239 2.4568 5.8022 20 7 11.8716 2.4991 6.8028 21 14 14.5582 2.3588 6.1412 22 1 15.2354 3.5389 5.5460 23 1 14.7904 2.3418 7.6078 24 1 15.1073 1.1173 5.5391 25 16 6.4292 2.8013 1.4534 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 3.5878 3.4722 -0.8839 32 1 3.5816 3.4669 0.8960 33 1 11.3074 2.5424 2.1717 34 1 10.3806 3.4755 4.6715 35 1 10.2867 1.6980 4.6659 36 1 12.1955 2.4791 7.7169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488894039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:04 Heat of formation + Delta-G solvation = -37.627558 kcal Electronic energy + Delta-G solvation = -22442.123032 eV Core-core repulsion = 18668.839218 eV Total energy + Delta-G solvation = -3773.283814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98300 -40.37313 -39.20164 -37.12033 -35.05864 -34.06010 -32.85538 -32.30198 -31.98115 -29.63250 -27.35474 -25.33077 -23.96940 -22.76405 -22.12292 -20.74401 -20.31524 -19.03196 -18.23405 -17.65753 -17.25478 -16.85465 -16.77196 -15.97043 -15.74062 -15.25569 -14.77531 -14.62555 -14.46681 -14.38996 -13.66911 -13.23972 -13.18129 -13.05735 -12.59012 -12.26958 -12.13310 -12.01706 -11.96531 -11.39113 -11.15042 -10.94588 -10.89348 -10.83136 -10.82011 -10.24179 -10.04524 -9.79963 -9.38658 -9.01691 -8.75082 -8.36482 -7.63612 -6.14133 -4.20630 0.76609 0.86197 1.32182 1.42688 1.79088 1.97192 2.39369 3.28619 3.32636 3.34716 3.70106 4.10173 4.13459 4.28839 4.40670 4.46893 4.52674 4.56229 4.80265 4.86093 5.01899 5.22000 5.26431 5.34847 5.53856 5.67723 6.01772 6.59209 6.80759 7.28635 7.31325 7.39361 7.53126 7.57175 7.70918 7.98856 8.67056 8.81684 9.26214 9.46833 10.96138 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.002377 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.360626 B =11778.868169 C =12437.486447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.355 6.355 4 C 0.466 3.534 5 O -0.490 6.490 6 C -0.024 4.024 7 C -0.002 4.002 8 N -0.210 5.210 9 N -0.488 5.488 10 H 0.450 0.550 11 C 0.355 3.645 12 N -0.609 5.609 13 C 0.655 3.345 14 O -0.595 6.595 15 N -0.683 5.683 16 C 0.260 3.740 17 C -0.543 4.543 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 S 0.232 5.768 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.398 0.602 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.640 0.081 -17.115 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.272 6.272 4 C 0.306 3.694 5 O -0.376 6.376 6 C -0.065 4.065 7 C -0.301 4.301 8 N -0.026 5.026 9 N -0.218 5.218 10 H 0.297 0.703 11 C -0.027 4.027 12 N -0.367 5.367 13 C 0.351 3.649 14 O -0.479 6.479 15 N -0.330 5.330 16 C 0.139 3.861 17 C -0.581 4.581 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 S 0.463 5.537 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.231 0.769 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.489 -0.247 -16.273 27.760 hybrid contribution 1.789 -0.321 -0.641 1.928 sum -20.699 -0.567 -16.915 26.737 Atomic orbital electron populations 1.21816 0.92361 1.03171 1.03637 1.23103 0.95454 0.79608 1.03030 1.86459 1.23662 1.33008 1.84114 1.23122 0.81064 0.91898 0.73289 1.90768 1.60310 1.42724 1.43841 1.19618 0.84809 0.93204 1.08875 1.28098 1.00965 1.02826 0.98193 1.74278 0.87930 1.16027 1.24339 1.45722 1.03810 1.67176 1.05081 0.70253 1.24534 0.96656 0.91666 0.89888 1.68266 1.14057 1.37067 1.17342 1.16882 0.85452 0.79164 0.83385 1.90706 1.40593 1.57691 1.58921 1.45466 1.04385 1.72277 1.10912 1.19146 0.96533 0.97872 0.72550 1.21186 0.91134 1.53114 0.92698 0.91789 1.24939 0.98588 0.94696 0.95773 1.69962 1.34364 1.48821 0.99191 0.86437 0.84288 0.78750 0.77208 1.20041 1.21064 1.20045 1.87043 0.91777 1.74846 1.00042 0.91422 0.90087 0.91271 0.91038 0.90792 0.84472 0.84161 0.76874 0.95315 0.95341 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 10.29 37.15 0.38 -0.25 16 2 C 0.06 0.41 6.19 37.15 0.23 0.64 16 3 O -0.36 -2.80 10.22 -39.26 -0.40 -3.20 16 4 C 0.47 4.35 7.95 36.00 0.29 4.63 16 5 O -0.49 -6.49 15.78 -18.76 -0.30 -6.79 16 6 C -0.02 -0.16 6.42 -29.04 -0.19 -0.35 16 7 C 0.00 -0.02 6.11 -13.89 -0.08 -0.11 16 8 N -0.21 -2.45 12.07 33.21 0.40 -2.05 16 9 N -0.49 -6.19 6.83 29.39 0.20 -5.99 16 10 H 0.45 4.55 8.96 -184.20 -1.65 2.90 16 11 C 0.35 5.80 8.16 -89.31 -0.73 5.07 16 12 N -0.61 -11.83 10.59 -18.27 -0.19 -12.02 16 13 C 0.66 15.10 8.46 -87.99 -0.74 14.36 16 14 O -0.60 -14.73 13.63 5.02 0.07 -14.66 16 15 N -0.68 -16.25 5.55 -66.67 -0.37 -16.62 16 16 C 0.26 7.21 5.43 -5.19 -0.03 7.18 16 17 C -0.54 -15.28 9.28 -34.44 -0.32 -15.60 16 18 H 0.06 1.70 7.60 -52.49 -0.40 1.30 16 19 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 21 Si 0.91 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 S 0.23 3.47 19.94 -107.50 -2.14 1.32 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 8.59 8.42 -40.82 -0.34 8.24 16 34 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 339.06 15.07 5.11 5.11 Total: -1.00 -36.30 339.06 -8.53 -44.83 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.33 Total: 2.17 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: -1.29 Total: 17.30 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.77 Total: -62.41 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.63 Total: -24.65 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.14 Total: 1.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.30 -8.53 -44.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488894039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.206 kcal (2) G-P(sol) polarization free energy of solvation -36.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds