Wall clock time and date at job start Tue Mar 31 2020 10:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.50693 * 109.47486 * 179.72204 * 6 4 3 8 8 N 1.27980 * 125.05980 * 89.69508 * 7 6 4 9 9 N 1.37938 * 115.12097 * 179.80466 * 8 7 6 10 10 H 0.97000 * 122.80939 * 180.20188 * 9 8 7 11 11 C 1.33675 * 114.37475 * 0.48664 * 9 8 7 12 12 N 1.33191 * 125.23467 * 179.75025 * 11 9 8 13 13 C 1.33571 * 119.99514 * 179.97438 * 12 11 9 14 14 O 1.21886 * 120.00031 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99306 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99646 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47200 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99403 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99818 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00466 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99647 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47439 * 60.00140 * 21 19 17 23 23 H 1.48496 * 109.47341 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47227 * 300.00491 * 21 19 17 25 25 S 1.70863 * 109.52523 * 359.74731 * 11 9 8 26 26 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 27 27 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 29 29 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 30 30 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 31 31 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 32 32 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 33 33 H 0.97004 * 120.00272 * 359.97438 * 15 13 12 34 34 H 1.09005 * 109.47297 * 300.00078 * 16 15 13 35 35 H 1.09004 * 109.47191 * 59.99708 * 16 15 13 36 36 H 0.96997 * 120.00196 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4255 2.8585 0.0106 8 7 6.1630 2.8177 -1.0346 9 7 7.5193 2.7514 -0.7921 10 1 8.1792 2.7186 -1.5022 11 6 7.8476 2.7300 0.5035 12 7 9.0894 2.6635 0.9805 13 6 9.2981 2.6488 2.2997 14 8 8.3522 2.6959 3.0670 15 7 10.5547 2.5810 2.7824 16 6 10.7837 2.5644 4.2293 17 6 12.2636 2.4847 4.5028 18 1 12.9634 2.4504 3.6810 19 6 12.7239 2.4568 5.8022 20 7 11.8716 2.4991 6.8028 21 14 14.5582 2.3588 6.1412 22 1 15.2354 3.5389 5.5460 23 1 14.7904 2.3418 7.6078 24 1 15.1073 1.1173 5.5391 25 16 6.4292 2.8013 1.4534 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 3.5878 3.4722 -0.8839 32 1 3.5816 3.4669 0.8960 33 1 11.3074 2.5424 2.1717 34 1 10.3806 3.4755 4.6715 35 1 10.2867 1.6980 4.6659 36 1 12.1955 2.4791 7.7169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488894039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:04 Heat of formation + Delta-G solvation = -66.324499 kcal Electronic energy + Delta-G solvation = -22443.367425 eV Core-core repulsion = 18668.839218 eV Total energy + Delta-G solvation = -3774.528207 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 314.088 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.88111 -41.46116 -40.79097 -37.86887 -36.64167 -35.70762 -34.41573 -33.88225 -32.60875 -30.59277 -29.33865 -26.70159 -24.82735 -24.47564 -22.89646 -22.38297 -21.24483 -20.55785 -19.18695 -18.94975 -18.43846 -18.00355 -17.62087 -17.57533 -17.06370 -17.01241 -16.52299 -15.94952 -15.35187 -15.32528 -15.05053 -14.41927 -14.10495 -14.08448 -13.83967 -13.59175 -13.56114 -13.01269 -12.86237 -12.78136 -12.64351 -12.47637 -12.42623 -12.13147 -11.70006 -11.53237 -11.52637 -11.35579 -11.00541 -10.81655 -10.62078 -10.12979 -9.27773 -8.30341 -6.47005 -0.46849 -0.38213 0.17019 0.24927 0.92828 1.07153 1.42351 1.47063 1.55208 1.67869 2.25349 2.43476 2.45447 3.02460 3.04123 3.49587 3.78417 4.03379 4.10241 4.13134 4.28446 4.38343 4.45992 4.86871 4.97214 5.03357 5.17264 5.21007 5.38050 5.43826 5.51290 5.55502 5.67124 5.81771 6.16888 6.60421 6.61732 6.85229 7.22129 7.57442 8.81763 Molecular weight = 314.09amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.002377 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.360626 B =11778.868169 C =12437.486447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.348 6.348 4 C 0.469 3.531 5 O -0.537 6.537 6 C -0.024 4.024 7 C 0.026 3.974 8 N -0.206 5.206 9 N -0.468 5.468 10 H 0.462 0.538 11 C 0.351 3.649 12 N -0.629 5.629 13 C 0.654 3.346 14 O -0.628 6.628 15 N -0.688 5.688 16 C 0.282 3.718 17 C -0.561 4.561 18 H 0.080 0.920 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.988 3.012 22 H -0.263 1.263 23 H -0.281 1.281 24 H -0.264 1.264 25 S 0.208 5.792 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.407 0.593 34 H -0.006 1.006 35 H -0.009 1.009 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.560 0.626 -18.990 30.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.265 6.265 4 C 0.311 3.689 5 O -0.427 6.427 6 C -0.064 4.064 7 C -0.273 4.273 8 N -0.021 5.021 9 N -0.198 5.198 10 H 0.312 0.688 11 C -0.030 4.030 12 N -0.391 5.391 13 C 0.350 3.650 14 O -0.513 6.513 15 N -0.337 5.337 16 C 0.159 3.841 17 C -0.598 4.598 18 H 0.098 0.902 19 C -0.194 4.194 20 N -0.565 5.565 21 Si 0.810 3.190 22 H -0.187 1.187 23 H -0.206 1.206 24 H -0.189 1.189 25 S 0.441 5.559 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.198 0.802 32 H 0.194 0.806 33 H 0.243 0.757 34 H 0.012 0.988 35 H 0.009 0.991 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.487 0.314 -18.255 29.748 hybrid contribution 1.706 -0.496 -0.228 1.791 sum -21.781 -0.182 -18.483 28.567 Atomic orbital electron populations 1.21825 0.90207 1.04289 1.04039 1.23310 0.97133 0.79012 1.02553 1.86470 1.22794 1.33694 1.83521 1.23551 0.81217 0.92245 0.71849 1.90767 1.61286 1.44377 1.46264 1.20042 0.81301 0.92399 1.12706 1.28598 1.02654 1.00715 0.95383 1.74380 0.87076 1.16749 1.23926 1.45906 1.04783 1.64914 1.04175 0.68781 1.24697 0.96446 0.90642 0.91207 1.68222 1.15604 1.40357 1.14894 1.17120 0.84712 0.78519 0.84688 1.90694 1.41425 1.58773 1.60424 1.45116 1.05464 1.73749 1.09356 1.18573 0.96375 0.94486 0.74670 1.21541 0.91287 1.53355 0.93651 0.90222 1.26050 1.04298 0.93707 0.95319 1.70116 1.37102 1.49511 0.99813 0.85172 0.77219 0.79418 0.77175 1.18711 1.20612 1.18863 1.87148 0.92244 1.74098 1.02449 0.90777 0.88658 0.91039 0.91300 0.91642 0.80180 0.80557 0.75736 0.98795 0.99077 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 71.98 0.74 -0.19 16 2 C 0.05 0.65 6.19 71.98 0.45 1.09 16 3 O -0.35 -4.70 10.22 -51.41 -0.53 -5.23 16 4 C 0.47 7.69 7.95 71.23 0.57 8.26 16 5 O -0.54 -13.69 15.78 21.94 0.35 -13.35 16 6 C -0.02 -0.23 6.42 29.10 0.19 -0.05 16 7 C 0.03 0.50 6.11 88.67 0.54 1.05 16 8 N -0.21 -4.28 12.07 -48.73 -0.59 -4.87 16 9 N -0.47 -11.15 6.83 -60.91 -0.42 -11.57 16 10 H 0.46 8.58 8.96 -214.68 -1.92 6.65 16 11 C 0.35 11.37 8.16 179.89 1.47 12.83 16 12 N -0.63 -24.86 10.59 -330.52 -3.50 -28.36 16 13 C 0.65 31.34 8.46 179.43 1.52 32.86 16 14 O -0.63 -32.54 13.63 -4.95 -0.07 -32.61 16 15 N -0.69 -34.15 5.55 -482.97 -2.68 -36.84 16 16 C 0.28 16.49 5.43 85.63 0.46 16.95 16 17 C -0.56 -32.22 9.28 25.60 0.24 -31.99 16 18 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 19 C 0.01 0.36 5.46 84.66 0.46 0.82 16 20 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 21 Si 0.99 43.73 29.54 68.60 2.03 45.76 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 25 S 0.21 6.11 19.94 -56.49 -1.13 4.98 16 26 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.07 0.90 8.13 -2.38 -0.02 0.88 16 31 H 0.18 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.18 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.41 18.12 8.42 -92.71 -0.78 17.34 16 34 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 35 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -82.53 339.06 -1.17 -83.70 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -1.55 Total: 13.36 kcal Atomic # 6 Polarization: 35.00 SS G_CDS: 6.63 Total: 41.63 kcal Atomic # 7 Polarization: -131.34 SS G_CDS: -6.90 Total: -138.25 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.25 Total: -51.19 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -1.13 Total: 4.98 kcal Total: -82.53 -1.17 -83.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488894039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.373 kcal (2) G-P(sol) polarization free energy of solvation -82.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds