Wall clock time and date at job start Tue Mar 31 2020 10:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86800 * 120.00609 * 2 1 4 4 H 1.48505 * 109.46810 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47043 * 119.99678 * 3 2 1 6 6 H 1.48494 * 109.47018 * 239.99948 * 3 2 1 7 7 C 1.39965 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00209 * 154.81892 * 7 2 1 9 9 C 1.41053 * 119.99832 * 334.82464 * 7 2 1 10 10 C 1.40735 * 120.30454 * 334.82441 * 9 7 2 11 11 C 1.36452 * 119.94420 * 179.97438 * 10 9 7 12 12 C 1.38875 * 120.59034 * 0.02562 * 11 10 9 13 13 C 1.38199 * 120.62080 * 0.02562 * 12 11 10 14 14 C 1.38696 * 120.02614 * 359.69054 * 13 12 11 15 15 N 1.38992 * 120.28844 * 180.27450 * 14 13 12 16 16 C 1.34769 * 119.99785 * 325.32946 * 15 14 13 17 17 O 1.21703 * 120.00837 * 4.37335 * 16 15 14 18 18 C 1.46625 * 119.99848 * 184.37872 * 16 15 14 19 19 C 1.36716 * 126.17621 * 359.68236 * 18 16 15 20 20 N 1.30941 * 113.93682 * 179.82690 * 19 18 16 21 21 C 1.29373 * 117.46297 * 0.48611 * 20 19 18 22 22 C 1.50701 * 124.71111 * 179.75042 * 21 20 19 23 23 C 1.53001 * 117.49942 * 8.59788 * 22 21 20 24 24 C 1.53005 * 60.00120 * 252.51155 * 23 22 21 25 25 S 1.70921 * 110.58337 * 359.72909 * 21 20 19 26 26 H 0.96998 * 120.00804 * 174.64392 * 1 2 3 27 27 H 1.08000 * 120.02946 * 359.95996 * 10 9 7 28 28 H 1.08007 * 119.70590 * 179.97438 * 11 10 9 29 29 H 1.07996 * 119.69602 * 179.97438 * 12 11 10 30 30 H 1.07998 * 119.98783 * 179.97438 * 13 12 11 31 31 H 0.96996 * 119.99698 * 145.32478 * 15 14 13 32 32 H 1.07995 * 123.02829 * 0.02562 * 19 18 16 33 33 H 1.09003 * 115.55124 * 154.30326 * 22 21 20 34 34 H 1.09004 * 117.49481 * 0.02562 * 23 22 21 35 35 H 1.08992 * 117.50130 * 145.02252 * 23 22 21 36 36 H 1.08996 * 117.49853 * 252.51240 * 24 23 22 37 37 H 1.08996 * 117.51842 * 107.47584 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 1.2777 2.7464 -0.0006 5 1 3.0964 1.6962 1.2126 6 1 3.0964 1.6962 -1.2125 7 6 2.0082 -1.2122 0.0005 8 1 3.0112 -1.2569 -0.3974 9 6 1.4034 -2.3754 0.5207 10 6 0.3822 -2.2748 1.4839 11 6 -0.1982 -3.4049 1.9818 12 6 0.2096 -4.6592 1.5470 13 6 1.2109 -4.7858 0.6029 14 6 1.8144 -3.6540 0.0753 15 7 2.8180 -3.7748 -0.8787 16 6 3.6817 -4.8077 -0.8211 17 8 3.5353 -5.6774 0.0176 18 6 4.7979 -4.8838 -1.7687 19 6 5.0772 -3.9851 -2.7605 20 7 6.1377 -4.2862 -3.4670 21 6 6.7716 -5.3711 -3.1589 22 6 8.0044 -5.8745 -3.8646 23 6 8.6593 -4.9474 -4.8905 24 6 7.8869 -6.1824 -5.3588 25 16 6.0173 -6.1539 -1.8400 26 1 -0.4851 -0.8363 -0.0784 27 1 0.0584 -1.3040 1.8290 28 1 -0.9812 -3.3233 2.7212 29 1 -0.2594 -5.5442 1.9511 30 1 1.5203 -5.7663 0.2724 31 1 2.8966 -3.1157 -1.5860 32 1 4.4789 -3.1047 -2.9426 33 1 8.6600 -6.5104 -3.2697 34 1 8.1988 -3.9732 -5.0547 35 1 9.7460 -4.9732 -4.9707 36 1 8.4655 -7.0206 -5.7469 37 1 6.9179 -6.0212 -5.8311 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579769055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:06 Heat of formation + Delta-G solvation = 50.063526 kcal Electronic energy + Delta-G solvation = -22308.957427 eV Core-core repulsion = 18950.325447 eV Total energy + Delta-G solvation = -3358.631980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20720 -39.36472 -37.47989 -36.96897 -34.06498 -33.89233 -30.76986 -29.40691 -28.35051 -26.56496 -25.11638 -23.12856 -22.65762 -22.16182 -21.18107 -20.37161 -18.85434 -18.41067 -17.96753 -16.95280 -16.37090 -15.67185 -15.09983 -14.85964 -14.65814 -14.40005 -14.22083 -14.03302 -13.88616 -13.24374 -12.80580 -12.47843 -12.31199 -12.05627 -11.81125 -11.60147 -11.51104 -11.13289 -11.05154 -10.92371 -10.76072 -10.47398 -10.45992 -9.91472 -9.75086 -9.45984 -9.42967 -9.15516 -8.97353 -8.82446 -7.68424 -7.45356 -7.03687 -4.54565 0.21039 1.10082 1.65886 2.35005 2.67255 2.77599 3.09596 3.20378 3.29945 3.50840 3.57812 3.81193 3.90089 3.92966 4.47338 4.49032 4.52478 4.67130 5.00658 5.08661 5.30337 5.33936 5.40990 5.48458 5.70606 5.88789 5.99829 6.15909 6.26863 6.42473 6.73997 6.87976 7.06365 7.31555 7.43640 7.55314 7.64079 7.69346 7.84947 7.94500 8.14119 8.23359 8.56742 8.68770 8.83371 9.93792 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.003793 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.218439 B = 7380.379354 C = 9010.322296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.042 3.958 3 Si 1.063 2.937 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.075 0.925 9 C 0.094 3.906 10 C -0.208 4.208 11 C -0.089 4.089 12 C -0.241 4.241 13 C -0.069 4.069 14 C 0.001 3.999 15 N -0.617 5.617 16 C 0.574 3.426 17 O -0.537 6.537 18 C -0.282 4.282 19 C 0.087 3.913 20 N -0.476 5.476 21 C 0.059 3.941 22 C -0.099 4.099 23 C -0.148 4.148 24 C -0.155 4.155 25 S 0.231 5.769 26 H 0.301 0.699 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.403 0.597 32 H 0.184 0.816 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.938 -7.108 -8.880 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.181 4.181 3 Si 0.886 3.114 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.093 0.907 9 C 0.089 3.911 10 C -0.227 4.227 11 C -0.108 4.108 12 C -0.261 4.261 13 C -0.089 4.089 14 C -0.093 4.093 15 N -0.259 5.259 16 C 0.359 3.641 17 O -0.416 6.416 18 C -0.407 4.407 19 C -0.071 4.071 20 N -0.190 5.190 21 C -0.215 4.215 22 C -0.121 4.121 23 C -0.187 4.187 24 C -0.194 4.194 25 S 0.491 5.509 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.239 0.761 32 H 0.200 0.800 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.007 -6.711 -8.083 16.720 hybrid contribution -0.377 -0.503 -0.391 0.740 sum 12.630 -7.214 -8.474 16.834 Atomic orbital electron populations 1.70467 1.08193 1.34470 1.28268 1.26984 0.95622 1.04206 0.91299 0.83659 0.75714 0.73916 0.78096 1.19752 1.19964 1.20061 1.20357 1.02762 0.94124 1.37942 0.90715 1.17472 0.92298 0.90796 0.90510 1.20760 1.02958 0.97477 1.01541 1.20420 0.98524 0.93131 0.98706 1.20264 1.03941 0.95986 1.05896 1.20716 0.94448 0.96805 0.96916 1.17542 0.97729 0.94161 0.99838 1.42517 1.28437 1.25970 1.28947 1.16723 0.80764 0.83440 0.83137 1.90794 1.74351 1.38826 1.37657 1.26181 1.05571 1.02588 1.06364 1.22467 0.93848 0.99787 0.90993 1.65929 1.07889 1.15888 1.29285 1.26418 1.00810 0.94994 0.99278 1.20525 0.94428 1.05328 0.91812 1.23017 0.99411 0.96167 1.00145 1.23055 1.02970 1.00052 0.93332 1.83900 1.17551 1.22440 1.27043 0.88517 0.87237 0.89052 0.88872 0.87071 0.76121 0.79952 0.85410 0.87244 0.88047 0.87820 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.95 12.32 55.55 0.68 -19.26 16 2 C 0.04 1.00 4.95 -17.32 -0.09 0.91 16 3 Si 1.06 20.58 30.00 -169.99 -5.10 15.48 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 6 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.52 -12.93 8.35 -37.87 -0.32 -13.24 16 8 H 0.07 1.76 7.38 -52.49 -0.39 1.38 16 9 C 0.09 2.37 5.32 -106.65 -0.57 1.80 16 10 C -0.21 -5.18 7.87 -39.28 -0.31 -5.49 16 11 C -0.09 -2.06 9.96 -39.99 -0.40 -2.45 16 12 C -0.24 -5.53 10.04 -39.36 -0.40 -5.93 16 13 C -0.07 -1.65 8.68 -39.43 -0.34 -1.99 16 14 C 0.00 0.03 6.33 -83.21 -0.53 -0.50 16 15 N -0.62 -12.81 4.88 -10.67 -0.05 -12.86 16 16 C 0.57 11.51 7.62 -12.88 -0.10 11.42 16 17 O -0.54 -12.30 14.37 5.19 0.07 -12.22 16 18 C -0.28 -4.60 6.52 -36.75 -0.24 -4.84 16 19 C 0.09 1.28 10.99 -18.48 -0.20 1.07 16 20 N -0.48 -6.63 9.96 -11.27 -0.11 -6.74 16 21 C 0.06 0.72 6.95 -13.31 -0.09 0.63 16 22 C -0.10 -0.88 6.28 -91.77 -0.58 -1.46 16 23 C -0.15 -1.17 10.12 -26.73 -0.27 -1.44 16 24 C -0.16 -1.16 10.23 -26.73 -0.27 -1.44 16 25 S 0.23 3.08 23.00 -107.50 -2.47 0.61 16 26 H 0.30 7.79 6.62 -40.82 -0.27 7.52 16 27 H 0.11 2.79 6.45 -52.49 -0.34 2.45 16 28 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.11 2.64 6.19 -52.49 -0.33 2.31 16 31 H 0.40 7.46 6.69 -40.82 -0.27 7.19 16 32 H 0.18 2.35 7.19 -52.49 -0.38 1.97 16 33 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.11 1.04 7.83 -51.93 -0.41 0.63 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -29.34 333.12 -10.36 -39.70 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -3.71 Total: 13.24 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -4.70 Total: -22.96 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.52 Total: -38.86 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.10 Total: 15.48 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.47 Total: 0.61 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.34 -10.36 -39.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579769055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.767 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds