Wall clock time and date at job start Tue Mar 31 2020 10:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86799 * 119.99631 * 2 1 4 4 H 1.48503 * 109.47243 * 239.99952 * 3 2 1 5 5 H 1.48500 * 109.47524 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47283 * 120.00269 * 3 2 1 7 7 C 1.40042 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99402 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00392 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99783 * 0.02562 * 9 7 2 11 11 N 1.34770 * 120.00365 * 180.02562 * 9 7 2 12 12 C 1.47070 * 121.12507 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.07026 * 115.16668 * 12 11 9 14 14 C 1.52315 * 109.17906 * 47.22035 * 13 12 11 15 15 N 1.32353 * 123.18326 * 161.08414 * 14 13 12 16 16 C 1.29733 * 118.04003 * 179.97438 * 15 14 13 17 17 C 1.47865 * 125.49730 * 179.90913 * 16 15 14 18 18 C 1.39553 * 120.14001 * 179.71983 * 17 16 15 19 19 C 1.37964 * 119.85350 * 179.97438 * 18 17 16 20 20 C 1.38355 * 120.14529 * 359.97438 * 19 18 17 21 21 C 1.38359 * 120.28660 * 0.02562 * 20 19 18 22 22 C 1.37966 * 120.13887 * 0.02562 * 21 20 19 23 23 S 1.76078 * 109.00115 * 359.64977 * 16 15 14 24 24 C 1.34831 * 122.73131 * 340.71918 * 14 13 12 25 25 C 1.47275 * 121.12275 * 359.97438 * 11 9 7 26 26 H 0.96997 * 120.00024 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.53921 * 235.04566 * 12 11 9 28 28 H 1.08998 * 109.53862 * 355.20892 * 12 11 9 29 29 H 1.09000 * 109.52011 * 167.12469 * 13 12 11 30 30 H 1.08995 * 109.52196 * 287.25417 * 13 12 11 31 31 H 1.08000 * 120.07433 * 359.97438 * 18 17 16 32 32 H 1.08004 * 119.93018 * 180.02562 * 19 18 17 33 33 H 1.07997 * 119.86067 * 179.72348 * 20 19 18 34 34 H 1.07993 * 119.92454 * 179.97438 * 21 20 19 35 35 H 1.08003 * 120.06750 * 180.02562 * 22 21 20 36 36 H 1.09008 * 109.84784 * 103.83290 * 25 11 9 37 37 H 1.08997 * 109.84712 * 342.84235 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6476 -0.0005 12 6 1.2388 -4.9355 -0.0011 13 6 1.5364 -5.6698 -1.3099 14 6 3.0354 -5.6285 -1.5773 15 7 3.6462 -6.4583 -2.4079 16 6 4.9284 -6.3337 -2.5612 17 6 5.7731 -7.1692 -3.4415 18 6 7.1458 -6.9326 -3.5258 19 6 7.9285 -7.7161 -4.3486 20 6 7.3553 -8.7349 -5.0887 21 6 5.9949 -8.9747 -5.0096 22 6 5.2010 -8.1977 -4.1914 23 16 5.4993 -5.0043 -1.5576 24 6 3.8562 -4.7342 -0.9903 25 6 3.4215 -3.6765 -0.0011 26 1 -0.4850 0.8400 0.0004 27 1 1.5778 -5.5391 0.8408 28 1 0.1664 -4.7604 0.0843 29 1 1.2096 -6.7065 -1.2283 30 1 1.0061 -5.1840 -2.1289 31 1 7.5946 -6.1379 -2.9483 32 1 8.9911 -7.5344 -4.4146 33 1 7.9715 -9.3425 -5.7348 34 1 5.5536 -9.7711 -5.5902 35 1 4.1393 -8.3861 -4.1302 36 1 3.7871 -3.9286 0.9944 37 1 3.8106 -2.7044 -0.3039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598115306.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:34 Heat of formation + Delta-G solvation = 15.262762 kcal Electronic energy + Delta-G solvation = -22355.905908 eV Core-core repulsion = 18995.764854 eV Total energy + Delta-G solvation = -3360.141054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 314.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23962 -40.07873 -39.27809 -36.71147 -34.69405 -33.33247 -32.49813 -31.92215 -30.79118 -28.58947 -26.66760 -25.32257 -24.53550 -23.47465 -22.51977 -21.33946 -19.67568 -19.15700 -18.38306 -17.78102 -17.25872 -16.73623 -16.48823 -16.29733 -15.79226 -15.68948 -15.39245 -15.18163 -14.63524 -14.49425 -14.35981 -14.00551 -13.81191 -13.74609 -13.52261 -13.20701 -13.07377 -12.71386 -12.60617 -12.41230 -12.33881 -12.05910 -12.01828 -11.83593 -10.94345 -10.75180 -10.59058 -10.19649 -9.92197 -9.88747 -9.31002 -9.06550 -8.32675 -6.89552 -0.77742 0.17093 0.44454 0.52100 0.56938 1.39052 1.42026 1.53776 1.74702 2.20896 2.41444 2.62632 2.82882 2.88826 3.52210 3.66295 3.81594 3.97622 4.00368 4.06347 4.16344 4.26973 4.28817 4.46394 4.50552 4.55686 4.60415 4.76099 4.82399 4.88036 4.94343 5.10284 5.13853 5.32108 5.48200 5.50438 5.55999 5.59714 5.99248 6.01075 6.27514 6.63659 6.83390 7.29880 8.39223 8.62350 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.003242 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.993716 B = 8635.290531 C = 9435.168329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.030 3.970 3 Si 0.994 3.006 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.250 1.250 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.546 3.454 10 O -0.624 6.624 11 N -0.644 5.644 12 C 0.120 3.880 13 C -0.044 4.044 14 C 0.059 3.941 15 N -0.485 5.485 16 C 0.103 3.897 17 C -0.048 4.048 18 C -0.105 4.105 19 C -0.117 4.117 20 C -0.100 4.100 21 C -0.123 4.123 22 C -0.091 4.091 23 S 0.138 5.862 24 C -0.240 4.240 25 C 0.202 3.798 26 H 0.275 0.725 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.132 0.868 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.374 -15.141 -7.695 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.813 3.187 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.605 4.605 8 H 0.111 0.889 9 C 0.352 3.648 10 O -0.511 6.511 11 N -0.381 5.381 12 C -0.004 4.004 13 C -0.085 4.085 14 C -0.072 4.072 15 N -0.198 5.198 16 C -0.172 4.172 17 C -0.052 4.052 18 C -0.126 4.126 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.141 4.141 22 C -0.112 4.112 23 S 0.396 5.604 24 C -0.361 4.361 25 C 0.077 3.923 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.150 0.850 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.168 0.832 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.224 -14.912 -7.715 25.523 hybrid contribution -1.329 0.790 0.293 1.574 sum 17.894 -14.122 -7.422 23.973 Atomic orbital electron populations 1.70174 1.09535 1.29130 1.36012 1.26976 0.95504 1.04900 0.91133 0.85125 0.78336 0.74821 0.80434 1.17929 1.19924 1.17393 1.21443 0.94767 0.89679 1.54595 0.88894 1.18597 0.86610 0.83664 0.75880 1.90554 1.15938 1.87049 1.57566 1.48175 1.05348 1.05495 1.79040 1.21255 0.98302 0.84645 0.96225 1.20689 0.87474 1.02172 0.98159 1.20819 0.97995 0.92830 0.95548 1.66039 1.08339 1.26804 1.18630 1.25974 0.91709 0.98649 1.00871 1.18028 0.92570 0.96704 0.97931 1.21376 0.91329 1.00319 0.99560 1.21428 1.01311 0.95012 0.95686 1.21756 0.94948 0.97054 0.98118 1.21453 0.94404 0.99783 0.98455 1.21371 1.00698 0.93913 0.95232 1.84205 1.06424 1.30196 1.39528 1.26611 0.96879 1.04968 1.07691 1.20026 0.81107 0.95800 0.95403 0.91467 0.90562 0.90948 0.87431 0.91990 0.84972 0.82376 0.82382 0.83188 0.86042 0.89346 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.00 11.83 21.83 0.26 -49.74 16 2 C 0.03 1.69 5.50 85.30 0.47 2.15 16 3 Si 0.99 40.40 29.56 68.60 2.03 42.42 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 6 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.57 -31.86 8.84 24.83 0.22 -31.64 16 8 H 0.09 4.61 5.83 -2.91 -0.02 4.59 16 9 C 0.55 31.85 7.65 86.36 0.66 32.51 16 10 O -0.62 -41.90 14.47 -4.32 -0.06 -41.96 16 11 N -0.64 -30.09 2.95 -826.88 -2.44 -32.53 16 12 C 0.12 4.83 6.33 86.27 0.55 5.38 16 13 C -0.04 -1.60 6.46 30.37 0.20 -1.40 16 14 C 0.06 2.15 6.75 42.22 0.29 2.43 16 15 N -0.48 -16.55 10.09 -175.13 -1.77 -18.32 16 16 C 0.10 3.04 7.35 87.55 0.64 3.69 16 17 C -0.05 -1.16 5.87 -20.10 -0.12 -1.27 16 18 C -0.11 -1.91 9.61 22.52 0.22 -1.70 16 19 C -0.12 -1.48 10.03 22.23 0.22 -1.26 16 20 C -0.10 -1.15 10.04 22.33 0.22 -0.93 16 21 C -0.12 -1.83 10.03 22.23 0.22 -1.61 16 22 C -0.09 -1.96 9.68 22.52 0.22 -1.74 16 23 S 0.14 3.78 22.38 -56.49 -1.26 2.52 16 24 C -0.24 -8.38 6.47 25.06 0.16 -8.22 16 25 C 0.20 7.68 6.60 85.65 0.57 8.24 16 26 H 0.28 15.25 8.29 -92.71 -0.77 14.48 16 27 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.07 3.26 7.03 -2.39 -0.02 3.24 16 29 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.13 2.10 7.31 -2.91 -0.02 2.08 16 32 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 34 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.12 2.87 7.82 -2.91 -0.02 2.84 16 36 H 0.09 2.94 8.14 -2.38 -0.02 2.92 16 37 H 0.10 3.86 5.66 -2.39 -0.01 3.85 16 Total: -1.00 -77.95 328.52 2.60 -75.36 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.11 Total: 17.61 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 4.73 Total: 4.64 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -3.95 Total: -100.59 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -0.06 Total: -41.96 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.26 Total: 2.52 kcal Total: -77.95 2.60 -75.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598115306.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.621 kcal (2) G-P(sol) polarization free energy of solvation -77.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds