Wall clock time and date at job start Tue Mar 31 2020 10:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99846 * 2 1 4 4 H 1.48505 * 109.47094 * 269.99422 * 3 2 1 5 5 H 1.48497 * 109.47592 * 29.99991 * 3 2 1 6 6 H 1.48507 * 109.46906 * 149.99705 * 3 2 1 7 7 C 1.37878 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00164 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47480 * 179.97438 * 9 7 2 11 11 O 1.45192 * 109.47508 * 179.97438 * 10 9 7 12 12 C 1.34225 * 117.00088 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00047 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99932 * 180.02562 * 12 11 10 15 15 F 1.39900 * 109.47515 * 60.00084 * 14 12 11 16 16 F 1.39897 * 109.47274 * 299.99990 * 14 12 11 17 17 O 1.42905 * 109.47264 * 180.02562 * 14 12 11 18 18 C 1.35651 * 117.00043 * 179.97438 * 17 14 12 19 19 C 1.39087 * 119.88940 * 359.72889 * 18 17 14 20 20 C 1.37117 * 120.11837 * 179.71941 * 19 18 17 21 21 C 1.40038 * 119.87860 * 0.57369 * 20 19 18 22 22 C 1.46863 * 120.11121 * 179.68011 * 21 20 19 23 23 O 1.21291 * 120.00253 * 180.02562 * 22 21 20 24 24 C 1.40038 * 119.77736 * 359.70142 * 21 20 19 25 25 C 1.37120 * 119.88081 * 359.97438 * 24 21 20 26 26 H 0.97003 * 120.00269 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47610 * 59.98966 * 9 7 2 28 28 H 1.09009 * 109.46588 * 299.99585 * 9 7 2 29 29 H 1.09004 * 109.46701 * 59.99057 * 10 9 7 30 30 H 1.09001 * 109.46610 * 299.99956 * 10 9 7 31 31 H 1.08001 * 119.93864 * 359.97438 * 19 18 17 32 32 H 1.07999 * 120.06055 * 180.26911 * 20 19 18 33 33 H 1.07995 * 119.99929 * 0.02562 * 22 21 20 34 34 H 1.08004 * 120.05943 * 179.97438 * 24 21 20 35 35 H 1.07995 * 119.94082 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6366 -0.0001 11 8 5.4735 -2.6366 -0.0001 12 6 6.0828 -3.8326 0.0003 13 8 5.4248 -4.8459 0.0002 14 6 7.5878 -3.9114 0.0009 15 9 8.0877 -3.2771 1.1432 16 9 8.0884 -3.2775 -1.1413 17 8 7.9930 -5.2818 0.0006 18 6 9.3267 -5.5297 0.0005 19 6 10.2285 -4.4707 -0.0050 20 6 11.5775 -4.7158 0.0007 21 6 12.0469 -6.0352 -0.0001 22 6 13.4908 -6.3036 -0.0011 23 8 13.8951 -7.4471 -0.0021 24 6 11.1348 -7.0979 -0.0002 25 6 9.7877 -6.8419 0.0008 26 1 -0.4851 0.8400 -0.0004 27 1 3.8746 -0.6807 0.8904 28 1 3.8751 -0.6797 -0.8896 29 1 3.6584 -3.1502 -0.8903 30 1 3.6579 -3.1505 0.8897 31 1 9.8654 -3.4536 -0.0097 32 1 12.2769 -3.8929 0.0007 33 1 14.1926 -5.4828 -0.0009 34 1 11.4918 -8.1172 -0.0012 35 1 9.0835 -7.6606 0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730872332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:30 Heat of formation + Delta-G solvation = -239.710850 kcal Electronic energy + Delta-G solvation = -25058.886504 eV Core-core repulsion = 20658.413812 eV Total energy + Delta-G solvation = -4400.472692 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.084 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.01976 -49.00554 -41.99862 -41.46022 -40.13294 -38.57077 -38.03084 -35.47280 -32.97828 -32.50711 -31.91875 -29.62433 -27.21574 -25.56944 -24.44766 -23.20353 -22.64459 -22.12426 -20.85204 -19.93351 -19.88548 -19.20978 -18.42928 -17.95311 -17.75982 -17.70194 -16.72919 -16.40152 -16.18735 -16.16204 -15.62617 -15.57075 -15.34887 -15.28833 -15.27450 -15.15593 -14.94463 -14.56980 -14.43146 -14.28446 -13.70761 -13.51684 -13.28011 -13.08297 -12.70429 -12.61759 -12.22908 -11.97859 -11.86121 -11.64136 -11.55017 -10.82306 -10.81932 -10.29936 -9.73636 -8.34796 -6.43596 -0.53571 -0.07970 0.18120 0.18793 1.37152 1.39471 1.40996 1.47343 1.52845 1.80713 2.33968 2.61661 2.69615 3.00314 3.02440 3.33389 3.48213 3.61348 3.94053 3.96844 4.07110 4.17283 4.25753 4.50077 4.50532 4.65261 4.79011 4.89132 5.01402 5.14531 5.20254 5.23184 5.26369 5.47237 5.72307 5.89996 6.13318 6.48706 6.62979 7.21527 8.80674 Molecular weight = 314.08amu Principal moments of inertia in cm(-1) A = 0.041306 B = 0.002416 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.706254 B =11585.127461 C =12077.740074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.542 4.542 8 H 0.040 0.960 9 C -0.007 4.007 10 C 0.089 3.911 11 O -0.332 6.332 12 C 0.458 3.542 13 O -0.462 6.462 14 C 0.479 3.521 15 F -0.157 7.157 16 F -0.157 7.157 17 O -0.298 6.298 18 C 0.111 3.889 19 C -0.219 4.219 20 C -0.011 4.011 21 C -0.225 4.225 22 C 0.397 3.603 23 O -0.507 6.507 24 C -0.031 4.031 25 C -0.149 4.149 26 H 0.271 0.729 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.143 0.857 32 H 0.185 0.815 33 H 0.159 0.841 34 H 0.150 0.850 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.594 -7.621 0.013 29.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.165 1.165 7 C -0.579 4.579 8 H 0.059 0.941 9 C -0.044 4.044 10 C 0.017 3.983 11 O -0.248 6.248 12 C 0.294 3.706 13 O -0.347 6.347 14 C 0.404 3.596 15 F -0.139 7.139 16 F -0.139 7.139 17 O -0.215 6.215 18 C 0.068 3.932 19 C -0.237 4.237 20 C -0.029 4.029 21 C -0.226 4.226 22 C 0.259 3.741 23 O -0.382 6.382 24 C -0.049 4.049 25 C -0.168 4.168 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.160 0.840 32 H 0.202 0.798 33 H 0.175 0.825 34 H 0.168 0.832 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 28.264 -8.509 0.015 29.517 hybrid contribution -0.783 0.752 -0.018 1.086 sum 27.482 -7.757 -0.003 28.555 Atomic orbital electron populations 1.70032 1.08295 1.28637 1.51149 1.25922 0.95645 1.03523 0.93486 0.85650 0.79636 0.77859 0.79531 1.18845 1.20837 1.16523 1.21044 0.90348 0.93962 1.52582 0.94139 1.19533 0.94329 0.91444 0.99091 1.23440 0.70898 1.01002 1.02935 1.86499 1.26772 1.29733 1.81755 1.22349 0.88822 0.83660 0.75742 1.90785 1.65233 1.36657 1.41998 1.20191 0.86842 0.77876 0.74738 1.93228 1.88191 1.82052 1.50388 1.93226 1.88149 1.82079 1.50400 1.86586 1.24622 1.22106 1.88205 1.19682 0.79808 0.96315 0.97357 1.21673 0.95396 0.98506 1.08119 1.21471 0.94334 0.96883 0.90169 1.21325 0.97827 0.94167 1.09269 1.24610 0.89261 0.92463 0.67763 1.90551 1.82002 1.28489 1.37189 1.21344 0.91003 1.00728 0.91823 1.20482 0.96877 0.93495 1.05908 0.92046 0.94176 0.94271 0.90608 0.90615 0.83954 0.79821 0.82464 0.83230 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.81 13.96 21.45 0.30 -56.51 16 2 C 0.01 0.71 5.47 84.65 0.46 1.17 16 3 Si 0.95 41.64 27.47 68.60 1.88 43.53 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 7 C -0.54 -29.70 9.66 25.60 0.25 -29.46 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.41 16 9 C -0.01 -0.29 4.42 29.85 0.13 -0.16 16 10 C 0.09 3.44 5.40 71.98 0.39 3.83 16 11 O -0.33 -11.22 10.22 -51.37 -0.52 -11.75 16 12 C 0.46 14.35 7.47 71.24 0.53 14.88 16 13 O -0.46 -16.43 16.25 28.40 0.46 -15.97 16 14 C 0.48 12.23 2.16 71.24 0.15 12.39 16 15 F -0.16 -3.70 15.30 44.97 0.69 -3.01 16 16 F -0.16 -3.69 15.25 44.97 0.69 -3.00 16 17 O -0.30 -7.53 9.59 -70.59 -0.68 -8.21 16 18 C 0.11 2.29 6.50 22.68 0.15 2.44 16 19 C -0.22 -3.53 8.21 22.21 0.18 -3.35 16 20 C -0.01 -0.11 9.77 22.44 0.22 0.11 16 21 C -0.22 -2.64 5.87 -20.15 -0.12 -2.76 16 22 C 0.40 3.70 11.44 70.08 0.80 4.50 16 23 O -0.51 -9.40 17.16 -3.06 -0.05 -9.46 16 24 C -0.03 -0.46 9.57 22.44 0.21 -0.25 16 25 C -0.15 -2.62 9.95 22.21 0.22 -2.40 16 26 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.04 1.71 7.20 -2.39 -0.02 1.70 16 28 H 0.04 1.65 7.57 -2.38 -0.02 1.63 16 29 H 0.08 2.91 8.13 -2.39 -0.02 2.89 16 30 H 0.08 2.91 8.13 -2.39 -0.02 2.89 16 31 H 0.14 2.27 5.07 -2.91 -0.01 2.26 16 32 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 33 H 0.16 -0.12 8.06 -2.91 -0.02 -0.14 16 34 H 0.15 2.03 7.64 -2.91 -0.02 2.01 16 35 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -69.28 326.04 7.44 -61.85 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 1.09 Total: 1.57 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 3.59 Total: 0.96 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.30 Total: -56.51 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.79 Total: -45.38 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 1.37 Total: -6.01 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 1.88 Total: 43.53 kcal Total: -69.28 7.44 -61.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730872332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.866 kcal (2) G-P(sol) polarization free energy of solvation -69.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds