Wall clock time and date at job start Tue Mar 31 2020 10:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86805 * 120.00223 * 2 1 4 4 H 1.48504 * 109.46918 * 240.00341 * 3 2 1 5 5 H 1.48506 * 109.46717 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47194 * 120.00154 * 3 2 1 7 7 C 1.38652 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00153 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00080 * 185.05854 * 9 7 2 11 11 C 1.38871 * 120.06797 * 354.46825 * 10 9 7 12 12 C 1.38100 * 119.92900 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.07148 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.93255 * 179.97438 * 13 12 11 15 15 O 1.45196 * 109.47493 * 90.00092 * 14 13 12 16 16 C 1.34749 * 117.00291 * 179.97438 * 15 14 13 17 17 O 1.21511 * 120.00060 * 359.97438 * 16 15 14 18 18 C 1.47397 * 119.99938 * 179.97438 * 16 15 14 19 19 C 1.39775 * 120.20195 * 0.25072 * 18 16 15 20 20 C 1.37757 * 119.90321 * 180.25015 * 19 18 16 21 21 C 1.38564 * 120.30942 * 359.77703 * 20 19 18 22 22 C 1.38056 * 120.40420 * 359.96984 * 21 20 19 23 23 C 1.38699 * 120.08739 * 0.02562 * 22 21 20 24 24 O 1.35646 * 120.15514 * 179.97438 * 23 22 21 25 25 C 1.38305 * 120.13352 * 0.25001 * 13 12 11 26 26 C 1.38097 * 120.07184 * 359.45412 * 25 13 12 27 27 H 0.97009 * 119.99824 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.03638 * 359.97438 * 11 10 9 29 29 H 1.08003 * 119.96836 * 180.02562 * 12 11 10 30 30 H 1.08997 * 109.47276 * 329.99603 * 14 13 12 31 31 H 1.09005 * 109.47274 * 209.99988 * 14 13 12 32 32 H 1.07999 * 120.04497 * 0.02562 * 19 18 16 33 33 H 1.08005 * 119.84860 * 179.78842 * 20 19 18 34 34 H 1.08007 * 119.79793 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.95342 * 180.02562 * 22 21 20 36 36 H 0.96696 * 113.99908 * 89.99839 * 24 23 22 37 37 H 1.08002 * 119.96334 * 179.70523 * 25 13 12 38 38 H 1.07998 * 120.03967 * 180.27196 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4571 -3.4395 0.0922 12 6 4.2023 -4.5972 0.1998 13 6 3.5686 -5.8206 0.3203 14 6 4.3848 -7.0819 0.4369 15 8 4.6540 -7.3566 1.8370 16 6 5.3781 -8.4582 2.1161 17 8 5.7733 -9.1702 1.2142 18 6 5.6906 -8.7996 3.5155 19 6 5.2337 -7.9865 4.5566 20 6 5.5338 -8.3086 5.8619 21 6 6.2832 -9.4382 6.1489 22 6 6.7366 -10.2531 5.1309 23 6 6.4441 -9.9446 3.8107 24 8 6.8893 -10.7441 2.8094 25 6 2.1873 -5.8892 0.3282 26 6 1.4365 -4.7346 0.2271 27 1 -0.4850 0.8401 0.0004 28 1 3.9525 -2.4846 -0.0031 29 1 5.2811 -4.5472 0.1899 30 1 5.3271 -6.9556 -0.0963 31 1 3.8309 -7.9146 0.0033 32 1 4.6493 -7.1051 4.3376 33 1 5.1832 -7.6778 6.6654 34 1 6.5133 -9.6831 7.1754 35 1 7.3198 -11.1320 5.3629 36 1 6.2775 -11.4541 2.5715 37 1 1.6953 -6.8465 0.4176 38 1 0.3579 -4.7884 0.2377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733388559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:54 Heat of formation + Delta-G solvation = -100.253087 kcal Electronic energy + Delta-G solvation = -24052.290389 eV Core-core repulsion = 20212.094569 eV Total energy + Delta-G solvation = -3840.195820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.76459 -39.44801 -38.95986 -37.07179 -36.84825 -35.86418 -32.47109 -31.88894 -30.46215 -30.24385 -30.09326 -26.22958 -25.15366 -24.05150 -22.85863 -22.06770 -21.14325 -20.57822 -18.69451 -18.09219 -17.92160 -17.20893 -16.81014 -16.24154 -15.85633 -15.63799 -15.10320 -14.69402 -14.62340 -14.35263 -14.16846 -13.72496 -13.63908 -13.14550 -12.95999 -12.78161 -12.54766 -12.47846 -12.27094 -11.99752 -11.73803 -11.39831 -11.12244 -11.00632 -10.82750 -10.72143 -10.51978 -10.42396 -10.26790 -9.43916 -9.42127 -9.07007 -8.91323 -8.27796 -7.34441 -6.53229 -4.11977 0.37745 0.89606 1.93388 2.14594 2.45392 2.91721 3.09398 3.11736 3.13285 3.35746 3.84567 3.90529 4.40342 4.48788 4.60082 4.71154 4.96490 5.01943 5.05708 5.15641 5.21023 5.25458 5.30188 5.52800 5.61942 5.65367 5.76191 5.86511 5.92498 6.04727 6.12148 6.32506 6.34907 6.51343 6.58792 6.80011 6.95926 7.14080 7.26373 7.34634 7.34774 7.70629 7.81472 7.91459 8.91919 9.59654 10.64117 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.002417 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.889308 B =11580.005021 C =12154.692276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.171 6.171 10 C 0.163 3.837 11 C -0.238 4.238 12 C -0.044 4.044 13 C -0.205 4.205 14 C 0.131 3.869 15 O -0.348 6.348 16 C 0.502 3.498 17 O -0.499 6.499 18 C -0.155 4.155 19 C -0.044 4.044 20 C -0.144 4.144 21 C -0.071 4.071 22 C -0.163 4.163 23 C 0.170 3.830 24 O -0.480 6.480 25 C -0.048 4.048 26 C -0.196 4.196 27 H 0.272 0.728 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.396 0.604 37 H 0.113 0.887 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.434 -17.598 10.276 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.074 6.074 10 C 0.108 3.892 11 C -0.257 4.257 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.059 3.941 15 O -0.265 6.265 16 C 0.347 3.653 17 O -0.388 6.388 18 C -0.156 4.156 19 C -0.063 4.063 20 C -0.162 4.162 21 C -0.089 4.089 22 C -0.182 4.182 23 C 0.124 3.876 24 O -0.291 6.291 25 C -0.067 4.067 26 C -0.215 4.215 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.255 0.745 37 H 0.131 0.869 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.563 -17.184 9.932 22.483 hybrid contribution 0.153 0.517 -0.159 0.562 sum 10.716 -16.667 9.773 22.094 Atomic orbital electron populations 1.70029 1.06019 1.28009 1.45261 1.25323 0.95867 0.98945 0.96292 0.85759 0.78726 0.79556 0.79293 1.19410 1.20197 1.19385 1.21325 0.91886 0.80716 1.53073 0.88919 1.83978 1.34508 1.11558 1.77343 1.19441 0.90318 0.88043 0.91384 1.21138 0.93770 0.98863 1.11927 1.20629 0.98452 0.91511 0.95670 1.18861 0.93325 0.92838 1.15531 1.21706 0.98982 0.95829 0.77574 1.86694 1.65405 1.42254 1.32144 1.20925 0.75803 0.79336 0.89254 1.90842 1.49828 1.50413 1.47736 1.19724 1.04880 0.99677 0.91353 1.21560 0.95139 0.97982 0.91587 1.21226 1.00207 0.98045 0.96721 1.21319 0.94760 0.93441 0.99380 1.21406 1.03364 1.02136 0.91255 1.18513 0.91483 0.89977 0.87585 1.84749 1.46430 1.45340 1.52560 1.20507 0.92598 0.96969 0.96598 1.20193 0.99690 0.90129 1.11508 0.91801 0.85268 0.87313 0.91171 0.91160 0.83621 0.84740 0.84958 0.84539 0.74531 0.86900 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.77 9.49 30.89 0.29 -10.48 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 10 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 11 C -0.24 -5.06 9.17 -39.40 -0.36 -5.42 16 12 C -0.04 -0.81 9.69 -39.61 -0.38 -1.20 16 13 C -0.20 -3.55 5.52 -104.58 -0.58 -4.13 16 14 C 0.13 2.00 5.60 36.00 0.20 2.20 16 15 O -0.35 -5.32 9.45 -40.62 -0.38 -5.70 16 16 C 0.50 7.34 7.89 34.46 0.27 7.61 16 17 O -0.50 -8.15 14.95 -26.60 -0.40 -8.55 16 18 C -0.15 -1.87 5.89 -104.86 -0.62 -2.48 16 19 C -0.04 -0.45 9.61 -39.18 -0.38 -0.83 16 20 C -0.14 -1.13 10.02 -39.64 -0.40 -1.52 16 21 C -0.07 -0.49 10.03 -39.53 -0.40 -0.88 16 22 C -0.16 -1.30 9.98 -39.48 -0.39 -1.69 16 23 C 0.17 1.81 6.72 -38.67 -0.26 1.55 16 24 O -0.48 -5.17 11.58 -40.52 -0.47 -5.64 16 25 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 26 C -0.20 -4.04 9.99 -39.39 -0.39 -4.44 16 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 29 H 0.11 1.73 8.06 -52.48 -0.42 1.30 16 30 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.15 1.49 7.61 -52.49 -0.40 1.09 16 33 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 34 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.40 2.63 9.06 45.56 0.41 3.04 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -32.92 342.04 -7.56 -40.48 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -3.07 Total: 6.29 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -4.13 Total: -18.37 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.76 Total: -23.93 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -1.25 Total: -24.67 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.92 -7.56 -40.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733388559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.770 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds