Wall clock time and date at job start Tue Mar 31 2020 10:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86805 * 120.00223 * 2 1 4 4 H 1.48504 * 109.46918 * 240.00341 * 3 2 1 5 5 H 1.48506 * 109.46717 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47194 * 120.00154 * 3 2 1 7 7 C 1.38652 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00153 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00066 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00080 * 185.05854 * 9 7 2 11 11 C 1.38871 * 120.06797 * 354.46825 * 10 9 7 12 12 C 1.38100 * 119.92900 * 180.02562 * 11 10 9 13 13 C 1.38302 * 120.07148 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.93255 * 179.97438 * 13 12 11 15 15 O 1.45196 * 109.47493 * 90.00092 * 14 13 12 16 16 C 1.34749 * 117.00291 * 179.97438 * 15 14 13 17 17 O 1.21511 * 120.00060 * 359.97438 * 16 15 14 18 18 C 1.47397 * 119.99938 * 179.97438 * 16 15 14 19 19 C 1.39775 * 120.20195 * 0.25072 * 18 16 15 20 20 C 1.37757 * 119.90321 * 180.25015 * 19 18 16 21 21 C 1.38564 * 120.30942 * 359.77703 * 20 19 18 22 22 C 1.38056 * 120.40420 * 359.96984 * 21 20 19 23 23 C 1.38699 * 120.08739 * 0.02562 * 22 21 20 24 24 O 1.35646 * 120.15514 * 179.97438 * 23 22 21 25 25 C 1.38305 * 120.13352 * 0.25001 * 13 12 11 26 26 C 1.38097 * 120.07184 * 359.45412 * 25 13 12 27 27 H 0.97009 * 119.99824 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.03638 * 359.97438 * 11 10 9 29 29 H 1.08003 * 119.96836 * 180.02562 * 12 11 10 30 30 H 1.08997 * 109.47276 * 329.99603 * 14 13 12 31 31 H 1.09005 * 109.47274 * 209.99988 * 14 13 12 32 32 H 1.07999 * 120.04497 * 0.02562 * 19 18 16 33 33 H 1.08005 * 119.84860 * 179.78842 * 20 19 18 34 34 H 1.08007 * 119.79793 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.95342 * 180.02562 * 22 21 20 36 36 H 0.96696 * 113.99908 * 89.99839 * 24 23 22 37 37 H 1.08002 * 119.96334 * 179.70523 * 25 13 12 38 38 H 1.07998 * 120.03967 * 180.27196 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4571 -3.4395 0.0922 12 6 4.2023 -4.5972 0.1998 13 6 3.5686 -5.8206 0.3203 14 6 4.3848 -7.0819 0.4369 15 8 4.6540 -7.3566 1.8370 16 6 5.3781 -8.4582 2.1161 17 8 5.7733 -9.1702 1.2142 18 6 5.6906 -8.7996 3.5155 19 6 5.2337 -7.9865 4.5566 20 6 5.5338 -8.3086 5.8619 21 6 6.2832 -9.4382 6.1489 22 6 6.7366 -10.2531 5.1309 23 6 6.4441 -9.9446 3.8107 24 8 6.8893 -10.7441 2.8094 25 6 2.1873 -5.8892 0.3282 26 6 1.4365 -4.7346 0.2271 27 1 -0.4850 0.8401 0.0004 28 1 3.9525 -2.4846 -0.0031 29 1 5.2811 -4.5472 0.1899 30 1 5.3271 -6.9556 -0.0963 31 1 3.8309 -7.9146 0.0033 32 1 4.6493 -7.1051 4.3376 33 1 5.1832 -7.6778 6.6654 34 1 6.5133 -9.6831 7.1754 35 1 7.3198 -11.1320 5.3629 36 1 6.2775 -11.4541 2.5715 37 1 1.6953 -6.8465 0.4176 38 1 0.3579 -4.7884 0.2377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733388559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:53 Heat of formation + Delta-G solvation = -120.154968 kcal Electronic energy + Delta-G solvation = -24053.153399 eV Core-core repulsion = 20212.094569 eV Total energy + Delta-G solvation = -3841.058830 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75914 -40.85946 -40.15950 -38.51117 -37.76293 -37.12123 -34.38031 -32.78916 -31.93175 -31.74102 -30.82499 -27.87563 -26.74125 -25.04241 -23.70681 -23.57416 -22.31065 -21.94930 -19.91629 -19.47202 -18.92281 -18.86523 -17.96991 -17.43209 -16.70183 -16.46692 -16.39217 -16.21207 -16.09221 -15.57812 -15.48500 -15.20605 -14.88115 -14.57545 -14.36378 -14.04680 -13.82897 -13.54015 -13.29302 -13.15600 -13.04189 -12.72394 -12.59383 -12.45723 -12.24614 -12.15382 -11.94707 -11.69906 -11.26453 -11.22340 -10.81705 -10.13199 -9.86094 -9.74597 -9.08144 -8.49609 -6.18216 -0.39731 0.24533 0.40814 0.53701 1.35645 1.44731 1.50210 1.51674 1.76277 2.16721 2.64359 2.80390 3.12524 3.16971 3.44006 3.62428 3.84788 3.89254 3.89557 4.07918 4.12278 4.27177 4.30866 4.38621 4.41341 4.52809 4.69316 4.72116 4.93053 4.96918 5.10708 5.20002 5.20755 5.24368 5.35941 5.43296 5.50169 5.64090 5.67075 5.76267 5.99030 6.09623 6.69143 6.73910 6.94698 7.72141 8.72780 Molecular weight = 314.10amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.002417 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.889308 B =11580.005021 C =12154.692276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.020 4.020 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.417 4.417 8 H 0.104 0.896 9 O -0.225 6.225 10 C 0.127 3.873 11 C -0.244 4.244 12 C -0.044 4.044 13 C -0.182 4.182 14 C 0.132 3.868 15 O -0.355 6.355 16 C 0.503 3.497 17 O -0.523 6.523 18 C -0.185 4.185 19 C -0.055 4.055 20 C -0.143 4.143 21 C -0.056 4.056 22 C -0.161 4.161 23 C 0.159 3.841 24 O -0.497 6.497 25 C -0.040 4.040 26 C -0.204 4.204 27 H 0.274 0.726 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.410 0.590 37 H 0.150 0.850 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.870 -19.576 12.239 26.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.493 4.493 8 H 0.121 0.879 9 O -0.131 6.131 10 C 0.075 3.925 11 C -0.263 4.263 12 C -0.062 4.062 13 C -0.183 4.183 14 C 0.059 3.941 15 O -0.272 6.272 16 C 0.349 3.651 17 O -0.414 6.414 18 C -0.187 4.187 19 C -0.073 4.073 20 C -0.160 4.160 21 C -0.074 4.074 22 C -0.179 4.179 23 C 0.113 3.887 24 O -0.311 6.311 25 C -0.058 4.058 26 C -0.223 4.223 27 H 0.083 0.917 28 H 0.142 0.858 29 H 0.157 0.843 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.270 0.730 37 H 0.167 0.833 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.026 -19.226 11.901 26.095 hybrid contribution -0.451 0.701 -0.658 1.062 sum 12.574 -18.526 11.244 25.054 Atomic orbital electron populations 1.70173 1.08028 1.29033 1.48248 1.26597 0.96842 1.02750 0.95613 0.84654 0.77425 0.74221 0.79978 1.18167 1.19597 1.18095 1.21816 0.92626 0.81314 1.53525 0.87903 1.83951 1.35973 1.12613 1.80526 1.19986 0.91561 0.88029 0.92885 1.21233 0.93097 0.99923 1.12096 1.20946 0.99902 0.90768 0.94547 1.19218 0.93539 0.93561 1.11937 1.21663 0.99283 0.94973 0.78156 1.86662 1.65902 1.43008 1.31617 1.21401 0.74922 0.78484 0.90284 1.90821 1.50917 1.51031 1.48634 1.19764 1.07355 1.01402 0.90133 1.21605 0.95505 0.97784 0.92449 1.21553 0.99687 0.98626 0.96173 1.21779 0.92652 0.92025 1.00910 1.21706 1.03007 1.03008 0.90160 1.18771 0.91632 0.89674 0.88613 1.84700 1.47300 1.45961 1.53097 1.20889 0.92808 0.97389 0.94719 1.20446 1.00249 0.90185 1.11461 0.91692 0.85772 0.84349 0.90269 0.89597 0.84380 0.82330 0.81255 0.82194 0.72955 0.83251 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.53 13.67 21.61 0.30 -55.23 16 2 C -0.02 -1.11 5.49 84.83 0.47 -0.65 16 3 Si 1.02 42.11 29.55 68.60 2.03 44.13 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.42 -23.91 9.49 67.92 0.64 -23.26 16 8 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 9 O -0.22 -13.31 9.76 -22.79 -0.22 -13.54 16 10 C 0.13 6.21 6.65 22.58 0.15 6.36 16 11 C -0.24 -10.53 9.17 22.39 0.21 -10.32 16 12 C -0.04 -1.53 9.69 22.25 0.22 -1.31 16 13 C -0.18 -5.91 5.52 -19.83 -0.11 -6.02 16 14 C 0.13 3.66 5.60 71.23 0.40 4.06 16 15 O -0.35 -10.22 9.45 -56.59 -0.54 -10.75 16 16 C 0.50 14.12 7.89 70.23 0.55 14.67 16 17 O -0.52 -16.56 14.95 26.80 0.40 -16.16 16 18 C -0.18 -4.22 5.89 -20.02 -0.12 -4.34 16 19 C -0.06 -1.03 9.61 22.53 0.22 -0.82 16 20 C -0.14 -1.77 10.02 22.23 0.22 -1.54 16 21 C -0.06 -0.53 10.03 22.30 0.22 -0.31 16 22 C -0.16 -2.02 9.98 22.34 0.22 -1.79 16 23 C 0.16 3.08 6.72 22.86 0.15 3.24 16 24 O -0.50 -10.09 11.58 -68.68 -0.80 -10.89 16 25 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 26 C -0.20 -8.52 9.99 22.39 0.22 -8.30 16 27 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 28 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 29 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.08 2.10 8.08 -2.39 -0.02 2.08 16 31 H 0.09 2.16 8.08 -2.38 -0.02 2.14 16 32 H 0.14 2.70 7.61 -2.91 -0.02 2.67 16 33 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 34 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 35 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.41 5.04 9.06 -74.06 -0.67 4.37 16 37 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 38 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -76.10 342.04 5.50 -70.59 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.45 Total: 23.31 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 3.89 Total: -31.47 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.30 Total: -55.23 kcal Atomic # 8 Polarization: -50.18 SS G_CDS: -1.15 Total: -51.34 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -76.10 5.50 -70.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733388559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.560 kcal (2) G-P(sol) polarization free energy of solvation -76.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds